HEADER VIRUS 12-SEP-17 6EGV TITLE SACBROOD VIRUS OF HONEYBEE COMPND MOL_ID: 1; COMPND 2 MOLECULE: STRUCTURAL PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: STRUCTURAL PROTEIN VP2; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: STRUCTURAL PROTEIN VP3; COMPND 9 CHAIN: C; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: MINOR CAPSID PROTEIN MICP; COMPND 12 CHAIN: D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACBROOD VIRUS; SOURCE 3 ORGANISM_TAXID: 89463; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: SACBROOD VIRUS; SOURCE 6 ORGANISM_TAXID: 89463; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: SACBROOD VIRUS; SOURCE 9 ORGANISM_TAXID: 89463; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: SACBROOD VIRUS; SOURCE 12 ORGANISM_TAXID: 89463 KEYWDS FULL PARTICLE, ICOSAHEDRAL VIRUS PARTICLE, IFLAVIRUS, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR P.PLEVKA,M.PROCHAZKOVA REVDAT 3 11-DEC-19 6EGV 1 CRYST1 SCALE REVDAT 2 01-AUG-18 6EGV 1 JRNL REVDAT 1 18-JUL-18 6EGV 0 JRNL AUTH M.PROCHAZKOVA,T.FUZIK,K.SKUBNIK,J.MORAVCOVA,Z.UBIPARIP, JRNL AUTH 2 A.PRIDAL,P.PLEVKA JRNL TITL VIRION STRUCTURE AND GENOME DELIVERY MECHANISM OF SACBROOD JRNL TITL 2 HONEYBEE VIRUS. JRNL REF PROC. NATL. ACAD. SCI. V. 115 7759 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29987012 JRNL DOI 10.1073/PNAS.1722018115 REMARK 2 REMARK 2 RESOLUTION. 3.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, GCTF, COOT, PHENIX, RELION, REMARK 3 RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : R-FACTOR REMARK 3 OVERALL ANISOTROPIC B VALUE : 47.100 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.180 REMARK 3 NUMBER OF PARTICLES : 13148 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6EGV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006605. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SACBROOD VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 15.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 5.80 REMARK 245 SAMPLE DETAILS : PETRUSOV, CZ REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON II (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 21.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 75000 REMARK 245 CALIBRATED MAGNIFICATION : 74325 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : PRELIMINAR GRID SCREENING REMARK 245 WAS PERFORMED MANUALLY ON FEI TECNAI F20 (CRYO STAGE). REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 2 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 2 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 3 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 3 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 3 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 4 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 4 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 4 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 5 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 5 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 5 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 6 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 6 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 6 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 7 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 7 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 7 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 8 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 8 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 8 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 9 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 9 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 10 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 10 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 11 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 11 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 11 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 12 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 12 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 12 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 13 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 13 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 13 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 14 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 14 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 15 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 15 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 15 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 16 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 16 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 16 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 17 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 17 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 17 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 18 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 18 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 19 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 19 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 19 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 20 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 20 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 20 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 21 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 21 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 21 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 22 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 22 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 22 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 23 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 23 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 23 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 24 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 24 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 24 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 25 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 25 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 25 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 26 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 26 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 26 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 27 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 27 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 27 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 28 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 28 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 28 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 29 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 29 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 29 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 30 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 30 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 30 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 31 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 31 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 31 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 32 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 32 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 32 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 33 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 33 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 33 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 34 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 34 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 34 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 35 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 35 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 35 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 36 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 36 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 36 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 37 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 37 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 38 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 38 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 38 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 39 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 39 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 39 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 40 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 40 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 40 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 41 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 41 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 41 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 42 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 42 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 42 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 43 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 43 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 43 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 44 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 44 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 44 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 45 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 45 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 45 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 46 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 46 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 46 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 47 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 47 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 47 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 48 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 48 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 48 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 49 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 49 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 49 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 50 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 50 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 50 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 51 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 51 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 51 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 52 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 52 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 53 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 53 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 53 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 54 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 54 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 54 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 55 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 55 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 55 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 56 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 56 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 56 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 57 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 57 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 57 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 58 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 58 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 58 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 59 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 59 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 59 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 60 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 60 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 60 -1.000000 0.000000 0.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 46 68.67 60.31 REMARK 500 SER A 187 118.46 -31.05 REMARK 500 ASN A 223 68.98 65.77 REMARK 500 ASN A 233 35.81 -143.83 REMARK 500 TYR A 237 50.68 -106.68 REMARK 500 ALA A 238 143.36 -170.56 REMARK 500 GLU A 242 56.83 -110.18 REMARK 500 SER B 7 -159.46 -134.91 REMARK 500 GLN B 9 42.10 -109.26 REMARK 500 GLU B 20 -120.61 62.51 REMARK 500 ILE B 64 -169.98 -115.95 REMARK 500 ASN B 76 -6.38 89.53 REMARK 500 THR B 91 -61.65 -131.20 REMARK 500 ALA B 139 40.18 -158.55 REMARK 500 ASP C 43 -60.20 -100.71 REMARK 500 ASN C 81 118.81 -163.32 REMARK 500 ASN C 139 -74.00 65.03 REMARK 500 THR C 153 -157.65 -101.79 REMARK 500 GLN C 202 43.94 -105.14 REMARK 500 VAL C 219 -60.77 -99.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-3865 RELATED DB: EMDB REMARK 900 SACBROOD VIRUS OF HONEYBEE DBREF1 6EGV A 1 243 UNP A0A223DN69_9VIRU DBREF2 6EGV A A0A223DN69 757 999 DBREF 6EGV B 1 239 UNP Q6ITS8 Q6ITS8_9VIRU 104 342 DBREF1 6EGV C 1 273 UNP A0A2I6HDZ6_9VIRU DBREF2 6EGV C A0A2I6HDZ6 429 701 DBREF 6EGV D 1 26 UNP Q9IGK7 Q9IGK7_9VIRU 304 329 SEQRES 1 A 243 MET ASP THR GLY ALA LYS GLU ASP GLU ASP GLU THR ALA SEQRES 2 A 243 ASN PHE SER ASP GLY VAL THR ALA MET GLY PHE GLN SER SEQRES 3 A 243 LEU ASP THR GLN VAL SER ILE LYS ASP ILE LEU ARG ARG SEQRES 4 A 243 PRO VAL LEU LEU PHE ASN HIS VAL GLU LEU ASP PRO ASP SEQRES 5 A 243 TYR THR GLY PHE PHE ILE PRO ILE MET PRO PRO SER ARG SEQRES 6 A 243 MET MET GLN TYR LYS SER GLY ASP LYS GLU THR SER PHE SEQRES 7 A 243 GLN ARG LEU ILE GLY ARG THR PRO GLN ALA ALA ILE MET SEQRES 8 A 243 ASN LEU PHE ARG PHE TRP ARG GLY SER LEU ARG TYR THR SEQRES 9 A 243 ILE ILE ILE HIS SER THR ASP GLY HIS PRO ILE TYR VAL SEQRES 10 A 243 THR HIS VAL PRO HIS THR GLY ASN ARG VAL TYR GLY LEU SEQRES 11 A 243 MET LYS VAL ASN ASN LEU HIS GLU TYR THR LYS VAL PRO SEQRES 12 A 243 ILE PHE GLY CYS GLY LEU THR THR GLU MET ILE ILE PRO SEQRES 13 A 243 SER VAL ASN PRO SER ILE CYS VAL GLU VAL PRO PHE ASP SEQRES 14 A 243 THR GLU ASN ASN TRP ALA VAL THR PHE ASP GLU ASP ALA SEQRES 15 A 243 GLN ARG ASN TYR SER TRP ARG ASP LYS GLY ASP THR VAL SEQRES 16 A 243 THR GLY HIS LEU VAL VAL THR PRO VAL VAL SER VAL TYR SEQRES 17 A 243 MET SER VAL TRP VAL GLU ALA GLY ASP ASP PHE GLU VAL SEQRES 18 A 243 SER ASN PHE TYR GLY PRO PRO SER VAL LYS THR ASN ASP SEQRES 19 A 243 TRP ASN TYR ALA PHE SER ASP GLU HIS SEQRES 1 B 239 GLU VAL PRO SER LYS GLU SER ILE GLN GLY ASP ALA THR SEQRES 2 B 239 GLN GLN SER SER LYS GLU GLU ASN THR ILE ILE THR ARG SEQRES 3 B 239 ASP GLN GLN GLN THR VAL SER GLU ASN ILE PRO SER THR SEQRES 4 B 239 VAL GLY ASP LEU VAL ILE ALA SER SER GLU PRO THR GLN SEQRES 5 B 239 GLN PHE ARG SER LEU THR ASN ARG TRP MET PRO ILE ASN SEQRES 6 B 239 SER ILE ARG VAL THR VAL ASN GLY LYS ARG ASN ASP LEU SEQRES 7 B 239 LEU ALA GLN TYR TYR ILE PRO GLU ASP PHE LEU SER THR SEQRES 8 B 239 HIS ALA LYS CYS ALA PRO ASN THR ILE PRO PHE GLU THR SEQRES 9 B 239 TYR VAL TYR GLY LYS TYR GLU LEU GLU MET LYS PHE VAL SEQRES 10 B 239 ALA ASN GLY ASN LYS PHE GLN CYS GLY LYS VAL ILE ILE SEQRES 11 B 239 SER VAL LYS PHE ASP SER TYR GLN ALA ASP ASN ILE ASN SEQRES 12 B 239 THR GLY PHE GLN ALA ALA LEU SER ARG PRO HIS ILE MET SEQRES 13 B 239 LEU ASP LEU SER THR ASN ASN GLU GLY VAL LEU LYS ILE SEQRES 14 B 239 PRO PHE ARG TYR HIS ARG ALA PHE VAL ARG ASN GLN THR SEQRES 15 B 239 HIS LYS THR ALA THR ALA GLY VAL ARG PRO GLY LYS PHE SEQRES 16 B 239 ALA SER ILE TYR VAL GLN VAL LEU SER PRO LEU GLN THR SEQRES 17 B 239 GLY GLU GLY GLY ALA ASN ASP MET PHE ILE ARG PRO PHE SEQRES 18 B 239 TYR ARG TYR THR ARG ALA GLU PHE ALA GLY MET SER TYR SEQRES 19 B 239 LYS VAL PRO LEU THR SEQRES 1 C 273 ASP LYS PRO LYS ASP VAL SER SER ILE THR ILE ILE PRO SEQRES 2 C 273 LYS PRO ARG LEU GLY PHE PRO HIS GLY LYS GLY LYS SER SEQRES 3 C 273 ASP ALA VAL ALA MET ARG VAL ASN PRO VAL ALA LEU THR SEQRES 4 C 273 SER PHE GLN ASP VAL SER ALA TYR PRO ASP GLU PRO ARG SEQRES 5 C 273 THR THR LEU ASP ILE ALA ARG ILE TRP GLY LEU ARG SER SEQRES 6 C 273 THR PHE ASN TRP GLY SER GLY ASP GLU HIS GLY LYS GLU SEQRES 7 C 273 LEU PHE ASN THR VAL LEU ASP PRO GLY LEU ARG PHE TYR SEQRES 8 C 273 ASP GLN ASP TYR GLU GLY GLN ILE THR PRO MET GLU TYR SEQRES 9 C 273 VAL THR GLY LEU TYR ASN PHE TRP SER GLY PRO ILE GLU SEQRES 10 C 273 LEU ARG PHE ASP PHE VAL SER ASN ALA PHE HIS THR GLY SEQRES 11 C 273 THR VAL ILE ILE SER ALA GLU TYR ASN ARG SER SER THR SEQRES 12 C 273 ASN THR ASP GLU CYS GLN SER HIS SER THR TYR THR LYS SEQRES 13 C 273 THR PHE HIS LEU GLY GLU GLN LYS SER VAL HIS PHE THR SEQRES 14 C 273 VAL PRO TYR ILE TYR ASP THR VAL VAL ARG ARG ASN THR SEQRES 15 C 273 ALA SER ALA TYR LEU PRO VAL THR ASP TYR ASP LYS VAL SEQRES 16 C 273 ASP ASN VAL SER ARG ALA GLN ALA MET GLY ILE ARG ALA SEQRES 17 C 273 GLU SER LYS MET ARG VAL LYS VAL ARG VAL VAL ASN VAL SEQRES 18 C 273 LEU ARG PRO VAL ALA SER THR THR SER THR ILE GLU VAL SEQRES 19 C 273 LEU VAL TYR MET ARG GLY GLY LYS ASN TYR ALA LEU HIS SEQRES 20 C 273 GLY LEU LYS GLN SER THR TYR TRP PRO SER ASN SER VAL SEQRES 21 C 273 VAL PRO ILE ASP SER PHE PRO PRO ASP GLY TYR ASP PRO SEQRES 1 D 26 ASP ASN PRO HIS ARG PHE LEU PRO ALA ASN VAL SER ASN SEQRES 2 D 26 ARG TRP ASN GLU TYR SER SER ALA TYR LEU PRO ARG VAL HELIX 1 AA1 SER A 32 ARG A 38 1 7 HELIX 2 AA2 SER A 64 GLN A 68 5 5 HELIX 3 AA3 THR A 85 ASN A 92 1 8 HELIX 4 AA4 PRO A 143 CYS A 147 5 5 HELIX 5 AA5 SER A 187 GLY A 192 1 6 HELIX 6 AA6 ASP A 193 VAL A 195 5 3 HELIX 7 AA7 ASN A 233 ALA A 238 5 6 HELIX 8 AA8 ASP B 42 SER B 47 1 6 HELIX 9 AA9 PHE B 54 ASN B 59 1 6 HELIX 10 AB1 GLU B 86 THR B 91 1 6 HELIX 11 AB2 ALA B 96 GLU B 103 5 8 HELIX 12 AB3 GLY B 145 ARG B 152 1 8 HELIX 13 AB4 THR C 53 ARG C 59 1 7 HELIX 14 AB5 THR C 100 GLY C 107 1 8 HELIX 15 AB6 ASP C 146 SER C 152 1 7 HELIX 16 AB7 ASP C 196 GLN C 202 1 7 HELIX 17 AB8 TYR D 22 VAL D 26 5 5 SHEET 1 AA1 4 VAL A 41 LEU A 49 0 SHEET 2 AA1 4 VAL A 207 PHE A 224 -1 O VAL A 207 N LEU A 49 SHEET 3 AA1 4 PHE A 94 ILE A 107 -1 N ARG A 102 O GLU A 214 SHEET 4 AA1 4 ALA A 175 VAL A 176 -1 O ALA A 175 N TRP A 97 SHEET 1 AA2 5 VAL A 41 LEU A 49 0 SHEET 2 AA2 5 VAL A 207 PHE A 224 -1 O VAL A 207 N LEU A 49 SHEET 3 AA2 5 PHE A 94 ILE A 107 -1 N ARG A 102 O GLU A 214 SHEET 4 AA2 5 SER A 161 VAL A 166 -1 O VAL A 164 N TYR A 103 SHEET 5 AA2 5 VAL C 29 ALA C 30 1 O VAL C 29 N GLU A 165 SHEET 1 AA3 5 GLY A 129 MET A 131 0 SHEET 2 AA3 5 GLY A 55 PRO A 59 -1 N PHE A 57 O GLY A 129 SHEET 3 AA3 5 GLY A 197 THR A 202 -1 O VAL A 201 N PHE A 56 SHEET 4 AA3 5 ILE A 115 PRO A 121 -1 N VAL A 120 O HIS A 198 SHEET 5 AA3 5 THR A 151 ILE A 154 -1 O GLU A 152 N VAL A 117 SHEET 1 AA4 3 TYR C 95 GLN C 98 0 SHEET 2 AA4 3 SER A 229 THR A 232 -1 N VAL A 230 O GLY C 97 SHEET 3 AA4 3 TRP C 255 PRO C 256 -1 O TRP C 255 N LYS A 231 SHEET 1 AA5 2 GLN B 15 GLU B 19 0 SHEET 2 AA5 2 THR B 22 ARG B 26 -1 O THR B 22 N GLU B 19 SHEET 1 AA6 5 GLN B 30 VAL B 32 0 SHEET 2 AA6 5 GLU B 164 ILE B 169 1 O GLU B 164 N THR B 31 SHEET 3 AA6 5 TYR B 105 ASN B 119 -1 N LEU B 112 O ILE B 169 SHEET 4 AA6 5 ASP B 215 MET B 232 -1 O PHE B 221 N LYS B 115 SHEET 5 AA6 5 ILE B 67 THR B 70 -1 N VAL B 69 O MET B 216 SHEET 1 AA7 4 MET B 62 PRO B 63 0 SHEET 2 AA7 4 ASP B 215 MET B 232 -1 O TYR B 222 N MET B 62 SHEET 3 AA7 4 TYR B 105 ASN B 119 -1 N LYS B 115 O PHE B 221 SHEET 4 AA7 4 VAL B 178 ARG B 179 -1 O VAL B 178 N GLY B 108 SHEET 1 AA8 4 LEU B 78 PRO B 85 0 SHEET 2 AA8 4 LYS B 194 GLN B 207 -1 O VAL B 200 N LEU B 79 SHEET 3 AA8 4 CYS B 125 PHE B 134 -1 N ILE B 129 O GLN B 201 SHEET 4 AA8 4 HIS B 154 ASP B 158 -1 O LEU B 157 N VAL B 128 SHEET 1 AA9 4 GLY C 62 GLY C 70 0 SHEET 2 AA9 4 THR C 231 GLY C 240 -1 O VAL C 236 N SER C 65 SHEET 3 AA9 4 ILE C 116 VAL C 123 -1 N ARG C 119 O TYR C 237 SHEET 4 AA9 4 SER C 165 VAL C 170 -1 O VAL C 170 N ILE C 116 SHEET 1 AB1 4 GLU C 78 VAL C 83 0 SHEET 2 AB1 4 ARG C 213 ASN C 220 -1 O VAL C 216 N LEU C 79 SHEET 3 AB1 4 GLY C 130 GLU C 137 -1 N GLU C 137 O ARG C 213 SHEET 4 AB1 4 TYR C 154 LEU C 160 -1 O TYR C 154 N ALA C 136 SHEET 1 AB2 3 ARG C 179 ARG C 180 0 SHEET 2 AB2 3 TYR C 109 SER C 113 -1 N TRP C 112 O ARG C 179 SHEET 3 AB2 3 ALA C 245 LEU C 249 -1 O GLY C 248 N ASN C 110 CISPEP 1 ILE B 84 PRO B 85 0 -2.77 CISPEP 2 PHE C 266 PRO C 267 0 -8.95 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000