HEADER VIRUS 12-SEP-17 6EH1 TITLE SACBROOD VIRUS OF HONEYBEE - EXPANSION STATE II COMPND MOL_ID: 1; COMPND 2 MOLECULE: STRUCTURAL PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: STRUCTURAL PROTEIN VP2; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: STRUCTURAL PROTEIN VP3; COMPND 9 CHAIN: C; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: MINOR CAPSID PROTEIN MICP; COMPND 12 CHAIN: D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACBROOD VIRUS; SOURCE 3 ORGANISM_TAXID: 89463; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: SACBROOD VIRUS; SOURCE 6 ORGANISM_TAXID: 89463; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: SACBROOD VIRUS; SOURCE 9 ORGANISM_TAXID: 89463; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: SACBROOD VIRUS; SOURCE 12 ORGANISM_TAXID: 89463 KEYWDS EMPTY PARTICLE, ICOSAHEDRAL VIRUS PARTICLE, IFLAVIRUS, EXPANDED KEYWDS 2 PARTICLE, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR P.PLEVKA,M.PROCHAZKOVA REVDAT 4 11-DEC-19 6EH1 1 CRYST1 SCALE REVDAT 3 17-OCT-18 6EH1 1 REMARK REVDAT 2 01-AUG-18 6EH1 1 JRNL REVDAT 1 18-JUL-18 6EH1 0 JRNL AUTH M.PROCHAZKOVA,T.FUZIK,K.SKUBNIK,J.MORAVCOVA,Z.UBIPARIP, JRNL AUTH 2 A.PRIDAL,P.PLEVKA JRNL TITL VIRION STRUCTURE AND GENOME DELIVERY MECHANISM OF SACBROOD JRNL TITL 2 HONEYBEE VIRUS. JRNL REF PROC. NATL. ACAD. SCI. V. 115 7759 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29987012 JRNL DOI 10.1073/PNAS.1722018115 REMARK 2 REMARK 2 RESOLUTION. 7.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, GCTF, COOT, PHENIX, RELION, REMARK 3 RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : R-FACTOR REMARK 3 OVERALL ANISOTROPIC B VALUE : 268.710 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 7.250 REMARK 3 NUMBER OF PARTICLES : 5330 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6EH1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200006611. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SACBROOD VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 15.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 5.80 REMARK 245 SAMPLE DETAILS : ISOLATED FROM HONEYBEE PUPAE REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON II (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 21.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 75000 REMARK 245 CALIBRATED MAGNIFICATION : 74325 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : PRELIMINAR GRID SCREENING REMARK 245 WAS PERFORMED MANUALLY ON FEI TECNAI F20 (CRYO STAGE). REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 2 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 2 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 3 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 3 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 3 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 4 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 4 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 4 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 5 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 5 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 5 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 6 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 6 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 6 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 7 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 7 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 7 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 8 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 8 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 8 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 9 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 9 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 10 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 10 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 11 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 11 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 11 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 12 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 12 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 12 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 13 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 13 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 13 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 14 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 14 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 15 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 15 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 15 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 16 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 16 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 16 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 17 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 17 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 17 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 18 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 18 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 19 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 19 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 19 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 20 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 20 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 20 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 21 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 21 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 21 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 22 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 22 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 22 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 23 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 23 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 23 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 24 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 24 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 24 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 25 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 25 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 25 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 26 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 26 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 26 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 27 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 27 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 27 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 28 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 28 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 28 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 29 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 29 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 29 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 30 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 30 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 30 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 31 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 31 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 31 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 32 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 32 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 32 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 33 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 33 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 33 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 34 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 34 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 34 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 35 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 35 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 35 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 36 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 36 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 36 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 37 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 37 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 38 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 38 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 38 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 39 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 39 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 39 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 40 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 40 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 40 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 41 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 41 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 41 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 42 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 42 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 42 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 43 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 43 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 43 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 44 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 44 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 44 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 45 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 45 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 45 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 46 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 46 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 46 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 47 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 47 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 47 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 48 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 48 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 48 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 49 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 49 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 49 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 50 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 50 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 50 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 51 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 51 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 51 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 52 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 52 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 53 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 53 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 53 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 54 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 54 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 54 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 55 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 55 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 55 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 56 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 56 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 56 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 57 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 57 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 57 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 58 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 58 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 58 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 59 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 59 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 59 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 60 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 60 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 60 -1.000000 0.000000 0.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 43 -62.19 -95.53 REMARK 500 SER A 187 122.58 -34.39 REMARK 500 ASN A 223 70.12 66.98 REMARK 500 ASN A 233 39.61 -145.95 REMARK 500 TYR A 237 52.38 -102.78 REMARK 500 ALA A 238 141.81 -171.43 REMARK 500 GLU A 242 55.70 -103.34 REMARK 500 ASN B 76 2.47 85.65 REMARK 500 THR B 91 -63.00 -140.27 REMARK 500 ASP B 135 70.08 57.12 REMARK 500 ALA B 139 43.36 -160.15 REMARK 500 ASN C 139 -74.93 65.80 REMARK 500 THR C 153 -159.33 -89.71 REMARK 500 GLN C 202 48.74 -104.46 REMARK 500 ASN D 16 52.89 70.13 REMARK 500 PRO D 24 -2.91 -59.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-3867 RELATED DB: EMDB REMARK 900 SACBROOD VIRUS OF HONEYBEE - EXPANSION STATE II DBREF1 6EH1 A 33 243 UNP A0A223FUL8_9VIRU DBREF2 6EH1 A A0A223FUL8 788 998 DBREF1 6EH1 B 61 239 UNP A0A223DN66_9VIRU DBREF2 6EH1 B A0A223DN66 213 391 DBREF1 6EH1 C 49 273 UNP A0A223DN66_9VIRU DBREF2 6EH1 C A0A223DN66 477 701 DBREF 6EH1 D 1 26 UNP Q9IGK7 Q9IGK7_9VIRU 304 329 SEQRES 1 A 211 ILE LYS ASP ILE LEU ARG ARG PRO VAL LEU LEU PHE ASN SEQRES 2 A 211 HIS VAL GLU LEU ASP PRO ASP TYR THR GLY PHE PHE ILE SEQRES 3 A 211 PRO ILE MET PRO PRO SER ARG MET MET GLN TYR LYS SER SEQRES 4 A 211 GLY ASP LYS GLU THR SER PHE GLN ARG LEU ILE GLY ARG SEQRES 5 A 211 THR PRO GLN ALA ALA ILE MET ASN LEU PHE ARG PHE TRP SEQRES 6 A 211 ARG GLY SER LEU ARG TYR THR ILE ILE ILE HIS SER THR SEQRES 7 A 211 ASP GLY HIS PRO ILE TYR VAL THR HIS VAL PRO HIS THR SEQRES 8 A 211 GLY ASN ARG VAL TYR GLY LEU MET LYS VAL ASN ASN LEU SEQRES 9 A 211 HIS GLU TYR THR LYS VAL PRO ILE PHE GLY CYS GLY LEU SEQRES 10 A 211 THR THR GLU MET ILE ILE PRO SER VAL ASN PRO SER ILE SEQRES 11 A 211 CYS VAL GLU VAL PRO PHE ASP THR GLU ASN ASN TRP ALA SEQRES 12 A 211 VAL THR PHE ASP GLU ASP ALA GLN ARG ASN TYR SER TRP SEQRES 13 A 211 ARG ASP LYS GLY ASP THR VAL THR GLY HIS LEU VAL VAL SEQRES 14 A 211 THR PRO VAL VAL SER VAL TYR MET SER VAL TRP VAL GLU SEQRES 15 A 211 ALA GLY ASP ASP PHE GLU VAL SER ASN PHE TYR GLY PRO SEQRES 16 A 211 PRO SER VAL LYS THR ASN ASP TRP ASN TYR ALA PHE SER SEQRES 17 A 211 ASP GLU HIS SEQRES 1 B 179 TRP MET PRO ILE ASN SER ILE ARG VAL THR VAL ASN GLY SEQRES 2 B 179 LYS ARG ASN ASP LEU LEU ALA GLN TYR TYR ILE PRO GLU SEQRES 3 B 179 ASP PHE LEU SER THR HIS ALA LYS CYS ALA PRO ASN THR SEQRES 4 B 179 ILE PRO PHE GLU THR TYR VAL TYR GLY LYS TYR GLU LEU SEQRES 5 B 179 GLU MET LYS PHE VAL ALA ASN GLY ASN LYS PHE GLN CYS SEQRES 6 B 179 GLY LYS VAL ILE ILE SER VAL LYS PHE ASP SER TYR GLN SEQRES 7 B 179 ALA ASP ASN ILE ASN THR GLY PHE GLN ALA ALA LEU SER SEQRES 8 B 179 ARG PRO HIS ILE MET LEU ASP LEU SER THR ASN ASN GLU SEQRES 9 B 179 GLY VAL LEU LYS ILE PRO PHE ARG TYR HIS ARG ALA PHE SEQRES 10 B 179 VAL ARG ASN GLN THR HIS LYS THR ALA THR ALA GLY VAL SEQRES 11 B 179 ARG PRO GLY LYS PHE ALA SER ILE TYR VAL GLN VAL LEU SEQRES 12 B 179 SER PRO LEU GLN THR GLY GLU GLY GLY ALA ASN ASP MET SEQRES 13 B 179 PHE ILE ARG PRO PHE TYR ARG TYR THR ARG ALA GLU PHE SEQRES 14 B 179 ALA GLY MET SER TYR LYS VAL PRO LEU THR SEQRES 1 C 225 ASP GLU PRO ARG THR THR LEU ASP ILE ALA ARG ILE TRP SEQRES 2 C 225 GLY LEU ARG SER THR PHE ASN TRP GLY SER GLY ASP GLU SEQRES 3 C 225 HIS GLY LYS GLU LEU PHE ASN THR VAL LEU ASP PRO GLY SEQRES 4 C 225 LEU ARG PHE TYR ASP GLN ASP TYR GLU GLY GLN ILE THR SEQRES 5 C 225 PRO MET GLU TYR VAL THR GLY LEU TYR ASN PHE TRP SER SEQRES 6 C 225 GLY PRO ILE GLU LEU ARG PHE ASP PHE VAL SER ASN ALA SEQRES 7 C 225 PHE HIS THR GLY THR VAL ILE ILE SER ALA GLU TYR ASN SEQRES 8 C 225 ARG SER SER THR ASN THR ASP GLU CYS GLN SER HIS SER SEQRES 9 C 225 THR TYR THR LYS THR PHE HIS LEU GLY GLU GLN LYS SER SEQRES 10 C 225 VAL HIS PHE THR VAL PRO TYR ILE TYR ASP THR VAL VAL SEQRES 11 C 225 ARG ARG ASN THR ALA SER ALA TYR LEU PRO VAL THR ASP SEQRES 12 C 225 TYR ASP LYS VAL ASP ASN VAL SER ARG ALA GLN ALA MET SEQRES 13 C 225 GLY ILE ARG ALA GLU SER LYS MET ARG VAL LYS VAL ARG SEQRES 14 C 225 VAL VAL ASN VAL LEU ARG PRO VAL ALA SER THR THR SER SEQRES 15 C 225 THR ILE GLU VAL LEU VAL TYR MET ARG GLY GLY LYS ASN SEQRES 16 C 225 TYR ALA LEU HIS GLY LEU LYS GLN SER THR TYR TRP PRO SEQRES 17 C 225 SER ASN SER VAL VAL PRO ILE ASP SER PHE PRO PRO ASP SEQRES 18 C 225 GLY TYR ASP PRO SEQRES 1 D 26 ASP ASN PRO HIS ARG PHE LEU PRO ALA ASN VAL SER ASN SEQRES 2 D 26 ARG TRP ASN GLU TYR SER SER ALA TYR LEU PRO ARG VAL HELIX 1 AA1 ILE A 33 ARG A 38 1 6 HELIX 2 AA2 SER A 64 GLN A 68 5 5 HELIX 3 AA3 THR A 85 ASN A 92 1 8 HELIX 4 AA4 SER A 187 GLY A 192 1 6 HELIX 5 AA5 ASP A 193 VAL A 195 5 3 HELIX 6 AA6 ASP A 234 ALA A 238 5 5 HELIX 7 AA7 GLU B 86 THR B 91 1 6 HELIX 8 AA8 ALA B 96 THR B 99 5 4 HELIX 9 AA9 ILE B 100 THR B 104 1 5 HELIX 10 AB1 GLY B 145 ARG B 152 1 8 HELIX 11 AB2 THR C 53 ARG C 59 1 7 HELIX 12 AB3 THR C 100 GLY C 107 1 8 HELIX 13 AB4 ASP C 146 SER C 152 1 7 HELIX 14 AB5 ASP C 196 GLN C 202 1 7 HELIX 15 AB6 TYR D 22 VAL D 26 5 5 SHEET 1 AA1 4 VAL A 41 LEU A 49 0 SHEET 2 AA1 4 VAL A 207 PHE A 224 -1 O VAL A 207 N LEU A 49 SHEET 3 AA1 4 PHE A 94 ILE A 107 -1 N ARG A 102 O GLU A 214 SHEET 4 AA1 4 SER A 161 VAL A 166 -1 O VAL A 164 N TYR A 103 SHEET 1 AA2 4 VAL A 41 LEU A 49 0 SHEET 2 AA2 4 VAL A 207 PHE A 224 -1 O VAL A 207 N LEU A 49 SHEET 3 AA2 4 PHE A 94 ILE A 107 -1 N ARG A 102 O GLU A 214 SHEET 4 AA2 4 ALA A 175 VAL A 176 -1 O ALA A 175 N TRP A 97 SHEET 1 AA3 5 GLY A 129 MET A 131 0 SHEET 2 AA3 5 GLY A 55 PRO A 59 -1 N PHE A 57 O GLY A 129 SHEET 3 AA3 5 GLY A 197 THR A 202 -1 O VAL A 201 N PHE A 56 SHEET 4 AA3 5 ILE A 115 PRO A 121 -1 N THR A 118 O VAL A 200 SHEET 5 AA3 5 THR A 151 ILE A 154 -1 O GLU A 152 N VAL A 117 SHEET 1 AA4 3 TYR C 95 GLY C 97 0 SHEET 2 AA4 3 VAL A 230 THR A 232 -1 N VAL A 230 O GLY C 97 SHEET 3 AA4 3 TRP C 255 PRO C 256 -1 O TRP C 255 N LYS A 231 SHEET 1 AA5 4 MET B 62 PRO B 63 0 SHEET 2 AA5 4 ASP B 215 MET B 232 -1 O TYR B 222 N MET B 62 SHEET 3 AA5 4 TYR B 105 ASN B 119 -1 N LYS B 115 O PHE B 221 SHEET 4 AA5 4 GLY B 165 ILE B 169 -1 O LEU B 167 N MET B 114 SHEET 1 AA6 4 ILE B 67 THR B 70 0 SHEET 2 AA6 4 ASP B 215 MET B 232 -1 O ILE B 218 N ILE B 67 SHEET 3 AA6 4 TYR B 105 ASN B 119 -1 N LYS B 115 O PHE B 221 SHEET 4 AA6 4 VAL B 178 ARG B 179 -1 O VAL B 178 N GLY B 108 SHEET 1 AA7 4 LEU B 78 PRO B 85 0 SHEET 2 AA7 4 LYS B 194 GLN B 207 -1 O VAL B 200 N LEU B 79 SHEET 3 AA7 4 CYS B 125 PHE B 134 -1 N ILE B 129 O GLN B 201 SHEET 4 AA7 4 HIS B 154 ASP B 158 -1 O LEU B 157 N VAL B 128 SHEET 1 AA8 4 GLY C 62 TRP C 69 0 SHEET 2 AA8 4 ILE C 232 GLY C 240 -1 O VAL C 236 N ARG C 64 SHEET 3 AA8 4 ILE C 116 VAL C 123 -1 N ASP C 121 O LEU C 235 SHEET 4 AA8 4 SER C 165 VAL C 170 -1 O VAL C 170 N ILE C 116 SHEET 1 AA9 4 GLU C 78 VAL C 83 0 SHEET 2 AA9 4 ARG C 213 ASN C 220 -1 O VAL C 216 N LEU C 79 SHEET 3 AA9 4 GLY C 130 GLU C 137 -1 N GLU C 137 O ARG C 213 SHEET 4 AA9 4 TYR C 154 LEU C 160 -1 O TYR C 154 N ALA C 136 SHEET 1 AB1 3 ARG C 179 ARG C 180 0 SHEET 2 AB1 3 TYR C 109 SER C 113 -1 N TRP C 112 O ARG C 179 SHEET 3 AB1 3 ALA C 245 LEU C 249 -1 O HIS C 247 N PHE C 111 CISPEP 1 ILE B 84 PRO B 85 0 3.52 CISPEP 2 PHE C 266 PRO C 267 0 0.73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000