HEADER IMMUNE SYSTEM 12-SEP-17 6EH4 TITLE 003 HUMAN T-CELL RECEPTOR SPECIFIC FOR HIV GAG EPITOPE SLYNTVATL TITLE 2 CARRIED BY HUMAN LEUKOCYTE ANTIGEN HLA-A*0201 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN T CELL RECEPTOR ALPHA CHAIN; COMPND 3 CHAIN: D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HUMAN T CELL RECEPTOR BETA CHAIN; COMPND 7 CHAIN: E; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN T CELL RECEPTOR, HUMAN LEUKOCUTE ANTIGEN, INFLUENZA KEYWDS 2 HAEMAGGLUTININ EPITOPE, 3D STRUCTURE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,D.K.COLE REVDAT 4 17-JAN-24 6EH4 1 REMARK REVDAT 3 16-OCT-19 6EH4 1 REMARK REVDAT 2 09-MAY-18 6EH4 1 COMPND JRNL HETNAM REVDAT 1 18-APR-18 6EH4 0 JRNL AUTH C.J.HOLLAND,B.J.MACLACHLAN,V.BIANCHI,S.J.HESKETH,R.MORGAN, JRNL AUTH 2 O.VICKERY,A.M.BULEK,A.FULLER,A.GODKIN,A.K.SEWELL, JRNL AUTH 3 P.J.RIZKALLAH,S.WELLS,D.K.COLE JRNL TITL IN SILICOAND STRUCTURAL ANALYSES DEMONSTRATE THAT INTRINSIC JRNL TITL 2 PROTEIN MOTIONS GUIDE T CELL RECEPTOR COMPLEMENTARITY JRNL TITL 3 DETERMINING REGION LOOP FLEXIBILITY. JRNL REF FRONT IMMUNOL V. 9 674 2018 JRNL REFN ESSN 1664-3224 JRNL PMID 29696015 JRNL DOI 10.3389/FIMMU.2018.00674 REMARK 2 REMARK 2 RESOLUTION. 1.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.8 REMARK 3 NUMBER OF REFLECTIONS : 100974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5303 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3837 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 45.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 204 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3510 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 681 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.053 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.618 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3858 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3485 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5262 ; 2.219 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8064 ; 1.014 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 496 ; 7.292 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;36.666 ;24.731 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 623 ;13.753 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.731 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 560 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4570 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 940 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1915 ; 1.158 ; 0.700 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1914 ; 1.148 ; 0.699 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2434 ; 1.780 ; 1.046 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2435 ; 1.780 ; 1.047 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1943 ; 1.978 ; 0.916 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1943 ; 1.978 ; 0.916 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2829 ; 2.846 ; 1.288 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4785 ; 7.724 ; 8.793 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4382 ; 7.525 ; 7.036 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 115 REMARK 3 ORIGIN FOR THE GROUP (A): 37.4508 -8.3430 17.4813 REMARK 3 T TENSOR REMARK 3 T11: 0.0640 T22: 0.0744 REMARK 3 T33: 0.0352 T12: 0.0043 REMARK 3 T13: -0.0172 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.0744 L22: 0.9187 REMARK 3 L33: 2.2839 L12: 0.0354 REMARK 3 L13: -0.2100 L23: 0.2971 REMARK 3 S TENSOR REMARK 3 S11: -0.0423 S12: 0.0937 S13: 0.0234 REMARK 3 S21: -0.1016 S22: -0.0337 S23: 0.0037 REMARK 3 S31: -0.0031 S32: -0.0359 S33: 0.0760 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 116 D 210 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5374 -26.4838 42.0320 REMARK 3 T TENSOR REMARK 3 T11: 0.0442 T22: 0.1150 REMARK 3 T33: 0.0419 T12: 0.0030 REMARK 3 T13: -0.0116 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.8322 L22: 3.6045 REMARK 3 L33: 1.6595 L12: 1.3751 REMARK 3 L13: 0.3246 L23: 0.9105 REMARK 3 S TENSOR REMARK 3 S11: 0.0280 S12: -0.1246 S13: -0.1622 REMARK 3 S21: 0.1209 S22: 0.0029 S23: -0.0839 REMARK 3 S31: 0.1177 S32: 0.0289 S33: -0.0309 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 117 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7857 -14.2190 3.4672 REMARK 3 T TENSOR REMARK 3 T11: 0.0827 T22: 0.0684 REMARK 3 T33: 0.0037 T12: -0.0020 REMARK 3 T13: -0.0089 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.1751 L22: 3.2749 REMARK 3 L33: 1.1291 L12: 0.8673 REMARK 3 L13: -0.2137 L23: -0.1745 REMARK 3 S TENSOR REMARK 3 S11: -0.0305 S12: 0.0502 S13: 0.0418 REMARK 3 S21: 0.0450 S22: 0.0075 S23: -0.0115 REMARK 3 S31: -0.0174 S32: 0.0468 S33: 0.0229 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 118 E 246 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4046 -22.2547 30.5144 REMARK 3 T TENSOR REMARK 3 T11: 0.0526 T22: 0.0658 REMARK 3 T33: 0.0056 T12: -0.0051 REMARK 3 T13: 0.0026 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.0534 L22: 1.3872 REMARK 3 L33: 2.4844 L12: 0.2697 REMARK 3 L13: 0.4544 L23: 0.7790 REMARK 3 S TENSOR REMARK 3 S11: -0.0150 S12: -0.0524 S13: -0.0625 REMARK 3 S21: -0.1124 S22: 0.0008 S23: -0.0033 REMARK 3 S31: 0.1026 S32: -0.0185 S33: 0.0142 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6EH4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 106284 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.260 REMARK 200 RESOLUTION RANGE LOW (A) : 43.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4GKZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 4K, 15% GLYCEROL, 100MM TRIS REMARK 280 PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.61000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN E 78 O HOH E 401 1.80 REMARK 500 CZ3 TRP E 240 O HOH E 658 2.04 REMARK 500 O HOH D 423 O HOH D 591 2.10 REMARK 500 O HOH D 542 O HOH D 594 2.14 REMARK 500 OD1 ASP D 140 O HOH D 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH E 488 O HOH E 638 1554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER D 47 CB SER D 47 OG 0.088 REMARK 500 SER E 131 CB SER E 131 OG -0.089 REMARK 500 ASP E 244 C ASP E 244 O 0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP D 40 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP D 40 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP D 68 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG D 73 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP D 117 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP D 130 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 PRO D 202 C - N - CD ANGL. DEV. = -16.3 DEGREES REMARK 500 LEU E 12 CB - CG - CD1 ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG E 31 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 LEU E 44 CB - CG - CD2 ANGL. DEV. = -14.7 DEGREES REMARK 500 ARG E 74 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG E 193 NE - CZ - NH1 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA D 87 171.88 178.07 REMARK 500 ASN D 97 20.11 -141.32 REMARK 500 ASP D 117 56.83 -147.57 REMARK 500 PRO D 202 59.61 -111.34 REMARK 500 GLU D 203 43.83 -74.49 REMARK 500 SER D 204 -84.70 -177.70 REMARK 500 LEU E 47 -64.73 -94.68 REMARK 500 SER E 73 -11.41 81.26 REMARK 500 ASP E 97 108.05 -168.95 REMARK 500 HIS E 154 58.12 -119.71 REMARK 500 ALA E 243 97.63 -56.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET E 1 LYS E 2 -147.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 694 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH D 695 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH E 784 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH E 785 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH E 786 DISTANCE = 6.45 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO E 303 DBREF 6EH4 D 2 205 PDB 6EH4 6EH4 2 205 DBREF 6EH4 E 1 244 PDB 6EH4 6EH4 1 244 SEQRES 1 D 204 LYS GLN GLU VAL THR GLN ILE PRO ALA ALA LEU SER VAL SEQRES 2 D 204 PRO GLU GLY GLU ASN LEU VAL LEU ASN CYS SER PHE THR SEQRES 3 D 204 ASP SER ALA ILE TYR ASN LEU GLN TRP PHE ARG GLN ASP SEQRES 4 D 204 PRO GLY LYS GLY LEU THR SER LEU LEU LEU ILE GLN SER SEQRES 5 D 204 SER GLN ARG GLU GLN THR SER GLY ARG LEU ASN ALA SER SEQRES 6 D 204 LEU ASP LYS SER SER GLY ARG SER THR LEU TYR ILE ALA SEQRES 7 D 204 ALA SER GLN PRO GLY ASP SER ALA THR TYR LEU CYS ALA SEQRES 8 D 204 VAL THR ASN PHE ASN LYS PHE TYR PHE GLY SER GLY THR SEQRES 9 D 204 LYS LEU ASN VAL LYS PRO ASN ILE GLN ASN PRO ASP PRO SEQRES 10 D 204 ALA VAL TYR GLN LEU ARG ASP SER LYS SER SER ASP LYS SEQRES 11 D 204 SER VAL CYS LEU PHE THR ASP PHE ASP SER GLN THR ASN SEQRES 12 D 204 VAL SER GLN SER LYS ASP SER ASP VAL TYR ILE THR ASP SEQRES 13 D 204 LYS CYS VAL LEU ASP MET ARG SER MET ASP PHE LYS SER SEQRES 14 D 204 ASN SER ALA VAL ALA TRP SER ASN LYS SER ASP PHE ALA SEQRES 15 D 204 CYS ALA ASN ALA PHE ASN ASN SER ILE ILE PRO GLU ASP SEQRES 16 D 204 THR PHE PHE PRO SER PRO GLU SER SER SEQRES 1 E 244 MET LYS ALA GLY VAL THR GLN THR PRO ARG TYR LEU ILE SEQRES 2 E 244 LYS THR ARG GLY GLN GLN VAL THR LEU SER CYS SER PRO SEQRES 3 E 244 ILE SER GLY HIS ARG SER VAL SER TRP TYR GLN GLN THR SEQRES 4 E 244 PRO GLY GLN GLY LEU GLN PHE LEU PHE GLU TYR PHE SER SEQRES 5 E 244 GLU THR GLN ARG ASN LYS GLY ASN PHE PRO GLY ARG PHE SEQRES 6 E 244 SER GLY ARG GLN PHE SER ASN SER ARG SER GLU MET ASN SEQRES 7 E 244 VAL SER THR LEU GLU LEU GLY ASP SER ALA LEU TYR LEU SEQRES 8 E 244 CYS ALA SER SER PHE ASP SER GLY ASN SER PRO LEU HIS SEQRES 9 E 244 PHE GLY ASN GLY THR ARG LEU THR VAL VAL GLU ASP LEU SEQRES 10 E 244 ASN LYS VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SEQRES 11 E 244 SER GLU ALA GLU ILE SER HIS THR GLN LYS ALA THR LEU SEQRES 12 E 244 VAL CYS LEU ALA THR GLY PHE PHE PRO ASP HIS VAL GLU SEQRES 13 E 244 LEU SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY SEQRES 14 E 244 VAL CYS THR ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA SEQRES 15 E 244 LEU ASN ASP SER ARG TYR SER LEU SER SER ARG LEU ARG SEQRES 16 E 244 VAL SER ALA THR PHE TRP GLN ASN PRO ARG ASN HIS PHE SEQRES 17 E 244 ARG CYS GLN VAL GLN PHE TYR GLY LEU SER GLU ASN ASP SEQRES 18 E 244 GLU TRP THR GLN ASP ARG ALA LYS PRO VAL THR GLN ILE SEQRES 19 E 244 VAL SER ALA GLU ALA TRP GLY ARG ALA ASP HET GOL D 301 6 HET EDO D 302 4 HET EDO D 303 4 HET EDO D 304 4 HET EDO D 305 4 HET GOL E 301 6 HET GOL E 302 6 HET EDO E 303 4 HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 4 EDO 5(C2 H6 O2) FORMUL 11 HOH *681(H2 O) HELIX 1 AA1 GLN D 82 SER D 86 5 5 HELIX 2 AA2 ARG D 164 ASP D 167 5 4 HELIX 3 AA3 ALA D 183 PHE D 188 1 6 HELIX 4 AA4 GLU E 83 SER E 87 5 5 HELIX 5 AA5 ASP E 116 VAL E 120 5 5 HELIX 6 AA6 SER E 131 GLN E 139 1 9 HELIX 7 AA7 ALA E 198 GLN E 202 1 5 SHEET 1 AA1 5 VAL D 5 ILE D 8 0 SHEET 2 AA1 5 LEU D 20 PHE D 26 -1 O SER D 25 N THR D 6 SHEET 3 AA1 5 ARG D 73 ILE D 78 -1 O LEU D 76 N LEU D 22 SHEET 4 AA1 5 LEU D 63 ASP D 68 -1 N ASN D 64 O TYR D 77 SHEET 5 AA1 5 GLU D 57 SER D 60 -1 N SER D 60 O LEU D 63 SHEET 1 AA2 5 ALA D 11 PRO D 15 0 SHEET 2 AA2 5 THR D 105 LYS D 110 1 O LYS D 110 N VAL D 14 SHEET 3 AA2 5 ALA D 87 THR D 94 -1 N TYR D 89 O THR D 105 SHEET 4 AA2 5 ASN D 33 GLN D 39 -1 N GLN D 35 O ALA D 92 SHEET 5 AA2 5 LEU D 45 GLN D 52 -1 O ILE D 51 N LEU D 34 SHEET 1 AA3 4 ALA D 11 PRO D 15 0 SHEET 2 AA3 4 THR D 105 LYS D 110 1 O LYS D 110 N VAL D 14 SHEET 3 AA3 4 ALA D 87 THR D 94 -1 N TYR D 89 O THR D 105 SHEET 4 AA3 4 PHE D 99 PHE D 101 -1 O TYR D 100 N VAL D 93 SHEET 1 AA4 4 ALA D 119 GLN D 122 0 SHEET 2 AA4 4 SER D 132 THR D 137 -1 O LEU D 135 N TYR D 121 SHEET 3 AA4 4 PHE D 168 SER D 177 -1 O ALA D 175 N CYS D 134 SHEET 4 AA4 4 TYR D 154 MET D 163 -1 N MET D 163 O PHE D 168 SHEET 1 AA5 4 THR E 6 THR E 8 0 SHEET 2 AA5 4 VAL E 20 SER E 25 -1 O SER E 23 N THR E 8 SHEET 3 AA5 4 SER E 75 VAL E 79 -1 O MET E 77 N LEU E 22 SHEET 4 AA5 4 PHE E 65 GLN E 69 -1 N SER E 66 O ASN E 78 SHEET 1 AA6 6 TYR E 11 THR E 15 0 SHEET 2 AA6 6 THR E 109 VAL E 114 1 O THR E 112 N LEU E 12 SHEET 3 AA6 6 ALA E 88 SER E 95 -1 N TYR E 90 O THR E 109 SHEET 4 AA6 6 SER E 32 THR E 39 -1 N SER E 34 O ALA E 93 SHEET 5 AA6 6 GLY E 43 PHE E 51 -1 O TYR E 50 N VAL E 33 SHEET 6 AA6 6 THR E 54 LYS E 58 -1 O ARG E 56 N GLU E 49 SHEET 1 AA7 4 TYR E 11 THR E 15 0 SHEET 2 AA7 4 THR E 109 VAL E 114 1 O THR E 112 N LEU E 12 SHEET 3 AA7 4 ALA E 88 SER E 95 -1 N TYR E 90 O THR E 109 SHEET 4 AA7 4 HIS E 104 PHE E 105 -1 O HIS E 104 N SER E 94 SHEET 1 AA8 4 GLU E 124 PHE E 128 0 SHEET 2 AA8 4 LYS E 140 PHE E 150 -1 O VAL E 144 N PHE E 128 SHEET 3 AA8 4 TYR E 188 SER E 197 -1 O LEU E 194 N LEU E 143 SHEET 4 AA8 4 VAL E 170 THR E 172 -1 N CYS E 171 O ARG E 193 SHEET 1 AA9 4 GLU E 124 PHE E 128 0 SHEET 2 AA9 4 LYS E 140 PHE E 150 -1 O VAL E 144 N PHE E 128 SHEET 3 AA9 4 TYR E 188 SER E 197 -1 O LEU E 194 N LEU E 143 SHEET 4 AA9 4 LEU E 177 LYS E 178 -1 N LEU E 177 O SER E 189 SHEET 1 AB1 4 LYS E 164 VAL E 166 0 SHEET 2 AB1 4 VAL E 155 VAL E 161 -1 N VAL E 161 O LYS E 164 SHEET 3 AB1 4 HIS E 207 PHE E 214 -1 O GLN E 211 N SER E 158 SHEET 4 AB1 4 GLN E 233 TRP E 240 -1 O ALA E 239 N PHE E 208 SSBOND 1 CYS D 24 CYS D 91 1555 1555 2.00 SSBOND 2 CYS D 134 CYS D 184 1555 1555 2.07 SSBOND 3 CYS D 159 CYS E 171 1555 1555 2.05 SSBOND 4 CYS E 24 CYS E 92 1555 1555 1.96 SSBOND 5 CYS E 145 CYS E 210 1555 1555 2.00 CISPEP 1 ILE D 8 PRO D 9 0 -7.72 CISPEP 2 SER D 201 PRO D 202 0 -9.55 CISPEP 3 THR E 8 PRO E 9 0 -7.91 CISPEP 4 PHE E 151 PRO E 152 0 -7.85 SITE 1 AC1 11 PRO D 15 GLU D 16 LYS D 110 PRO D 111 SITE 2 AC1 11 ASN D 112 SER D 141 GLN D 142 HOH D 402 SITE 3 AC1 11 HOH D 451 HOH D 586 TRP E 240 SITE 1 AC2 9 THR D 6 ILE D 8 ASN D 23 CYS D 24 SITE 2 AC2 9 SER D 25 HOH D 532 HOH D 578 ARG E 10 SITE 3 AC2 9 HOH E 420 SITE 1 AC3 6 ARG D 38 GLN D 39 ASP D 40 LYS D 43 SITE 2 AC3 6 GLY D 44 THR D 46 SITE 1 AC4 6 SER D 66 LEU D 67 ASP D 68 ARG D 73 SITE 2 AC4 6 SER D 74 THR D 75 SITE 1 AC5 4 ASP D 130 HOH D 411 HOH D 436 HOH D 589 SITE 1 AC6 11 SER D 126 SER D 128 ALA E 126 VAL E 127 SITE 2 AC6 11 ALA E 237 GLU E 238 HOH E 439 HOH E 471 SITE 3 AC6 11 HOH E 489 HOH E 540 HOH E 640 SITE 1 AC7 10 SER D 71 VAL E 5 THR E 6 GLN E 7 SITE 2 AC7 10 ARG E 10 GLY E 106 ASN E 107 GLY E 108 SITE 3 AC7 10 HOH E 624 HOH E 676 SITE 1 AC8 5 GLN E 38 THR E 39 PRO E 40 ARG E 110 SITE 2 AC8 5 HOH E 434 CRYST1 43.230 81.220 65.070 90.00 90.30 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023132 0.000000 0.000121 0.00000 SCALE2 0.000000 0.012312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015368 0.00000