HEADER MEMBRANE PROTEIN 13-SEP-17 6EHD TITLE OMPT (IN-VITRO FOLDED), AN OUTER MEMBRANE PROTEIN OF VIBRIO CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OMPT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39541 SOURCE 3 / CLASSICAL OGAWA 395 / O395); SOURCE 4 ORGANISM_TAXID: 345073; SOURCE 5 STRAIN: ATCC 39541 / CLASSICAL OGAWA 395 / O395; SOURCE 6 GENE: OMPT, VC0395_A1445; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS OUTER MEMBRANE PROTEIN, PORIN, OMPF OR OMPC ORTHOLOG, ION-TRANSPORT, KEYWDS 2 MEMBRANE BETA BARREL, ION-CHANNEL, MEMBRANE PROTEIN, DIFFUSION KEYWDS 3 PORIN, DIFFUSION CHANNEL, NON-SPECIFIC PORIN. EXPDTA X-RAY DIFFRACTION AUTHOR B.VAN DEN BERG,M.PATHANIA REVDAT 4 17-JAN-24 6EHD 1 REMARK REVDAT 3 03-OCT-18 6EHD 1 REMARK REVDAT 2 09-MAY-18 6EHD 1 JRNL REVDAT 1 25-APR-18 6EHD 0 JRNL AUTH M.PATHANIA,S.ACOSTA-GUTIERREZ,S.P.BHAMIDIMARRI,A.BASLE, JRNL AUTH 2 M.WINTERHALTER,M.CECCARELLI,B.VAN DEN BERG JRNL TITL UNUSUAL CONSTRICTION ZONES IN THE MAJOR PORINS OMPU AND OMPT JRNL TITL 2 FROM VIBRIO CHOLERAE. JRNL REF STRUCTURE V. 26 708 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 29657131 JRNL DOI 10.1016/J.STR.2018.03.010 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 59541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2915 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4264 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3520 REMARK 3 BIN FREE R VALUE SET COUNT : 256 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2489 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 147 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.12000 REMARK 3 B22 (A**2) : -1.49000 REMARK 3 B33 (A**2) : -1.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.63000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.180 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2713 ; 0.024 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2478 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3637 ; 2.185 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5762 ; 1.063 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 7.536 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;37.626 ;25.039 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 393 ;14.299 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;17.782 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 380 ; 0.147 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2987 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 565 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1298 ; 4.172 ; 3.640 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1297 ; 4.165 ; 3.640 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1622 ; 5.556 ; 5.412 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1623 ; 5.556 ; 5.411 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1414 ; 4.921 ; 4.214 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1414 ; 4.910 ; 4.213 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2010 ; 7.146 ; 6.082 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2624 ; 9.543 ;41.075 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2605 ; 9.485 ;40.858 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6EHD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9282 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62456 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 49.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6EHB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NACL, 0.1 M MES, 33% V/V PEG REMARK 280 400, 4% V/V ETHYLENE GLYCOL, PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.94000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.92000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.94000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.92000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 62 REMARK 465 SER A 63 REMARK 465 GLY A 64 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 298 O HOH A 501 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 179 OD1 ASN A 179 2656 1.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 37 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 2 87.09 -53.88 REMARK 500 ILE A 3 102.71 -58.84 REMARK 500 ASP A 7 -118.98 177.50 REMARK 500 GLU A 25 121.14 -33.49 REMARK 500 ASP A 26 31.02 71.37 REMARK 500 SER A 35 70.94 -69.39 REMARK 500 ASP A 48 -32.55 -39.60 REMARK 500 TYR A 95 -135.08 62.27 REMARK 500 PHE A 102 -48.05 -137.24 REMARK 500 ASP A 129 -97.64 68.69 REMARK 500 GLU A 141 79.71 -113.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 C8E A 401 REMARK 610 C8E A 402 REMARK 610 C8E A 403 REMARK 610 C8E A 405 REMARK 610 C8E A 406 REMARK 610 C8E A 407 REMARK 610 C8E A 408 REMARK 610 C8E A 410 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C8E A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C8E A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C8E A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C8E A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C8E A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C8E A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C8E A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C8E A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C8E A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C8E A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 411 DBREF1 6EHD A 1 325 UNP A0A0H3AME7_VIBC3 DBREF2 6EHD A A0A0H3AME7 44 368 SEQADV 6EHD TYR A 323 UNP A0A0H3AME ILE 366 ENGINEERED MUTATION SEQRES 1 A 325 ALA GLU ILE LEU LYS SER ASP ALA GLY THR VAL ASP PHE SEQRES 2 A 325 TYR GLY GLN LEU ARG THR GLU LEU LYS PHE LEU GLU ASP SEQRES 3 A 325 LYS ASP PRO THR ILE GLY SER GLY SER SER ARG ALA GLY SEQRES 4 A 325 VAL ASP ALA ASN TYR THR VAL ASN ASP SER LEU ALA LEU SEQRES 5 A 325 GLN GLY LYS VAL GLU PHE ALA LEU LYS ASP SER GLY ASP SEQRES 6 A 325 MET TYR VAL ARG ASN HIS ILE LEU GLY VAL LYS THR ASN SEQRES 7 A 325 PHE GLY LYS PHE SER PHE GLY LYS GLN TRP THR THR SER SEQRES 8 A 325 ASP ASP VAL TYR GLY ALA ASP TYR SER TYR PHE PHE GLY SEQRES 9 A 325 GLY THR GLY LEU ARG TYR GLY THR LEU SER ASP ALA LEU SEQRES 10 A 325 HIS ASP SER GLN VAL LYS TYR VAL TYR GLU ALA ASP SER SEQRES 11 A 325 PHE TRP VAL LYS ALA GLY TYR GLY PHE PRO GLU ASP ASN SEQRES 12 A 325 ALA LYS GLN GLU LEU ALA GLU LEU TYR VAL GLY ALA THR SEQRES 13 A 325 PHE GLY ASP LEU ALA VAL HIS ALA GLY GLY GLY GLN ASN SEQRES 14 A 325 ARG ASP LYS ALA PHE LYS VAL GLY SER ASN THR VAL GLY SEQRES 15 A 325 THR THR THR THR ASP ILE LYS ALA ASP VAL THR ASN SER SEQRES 16 A 325 TYR PHE GLU VAL THR GLY GLU TYR THR ILE GLY ASP ALA SEQRES 17 A 325 LEU ILE GLY VAL THR TYR TYR ASN ALA GLU LEU ASP VAL SEQRES 18 A 325 GLU ASN ASN PRO LEU VAL ILE ASP GLU ASP ALA ILE SER SEQRES 19 A 325 VAL ALA GLY THR TYR LYS VAL ALA ASP LYS THR LYS LEU SEQRES 20 A 325 TYR ALA GLY TYR GLU TYR VAL MET GLN GLU ALA ASN THR SEQRES 21 A 325 GLY ALA ASP GLU ASP GLY THR LEU VAL TYR LEU GLY VAL SEQRES 22 A 325 GLU TYR LYS PHE ALA SER TRP ALA ARG VAL TYR ALA GLU SEQRES 23 A 325 TYR GLY TYR GLY ASP GLY THR THR LEU GLY TYR THR ASN SEQRES 24 A 325 LYS GLY SER ASP ALA GLU VAL LYS ALA THR LYS VAL ASP SEQRES 25 A 325 SER ALA ASN ASN PHE GLY ILE GLY ALA ARG TYR TYR TRP HET C8E A 401 13 HET C8E A 402 6 HET C8E A 403 9 HET C8E A 404 21 HET C8E A 405 13 HET C8E A 406 11 HET C8E A 407 16 HET C8E A 408 13 HET C8E A 409 21 HET C8E A 410 12 HET MES A 411 12 HETNAM C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 2 C8E 10(C16 H34 O5) FORMUL 12 MES C6 H13 N O4 S FORMUL 13 HOH *141(H2 O) HELIX 1 AA1 THR A 89 TYR A 95 1 7 SHEET 1 AA119 GLU A 2 SER A 6 0 SHEET 2 AA119 THR A 30 ILE A 31 0 SHEET 3 AA119 ARG A 37 ASN A 47 0 SHEET 4 AA119 LEU A 50 ALA A 59 -1 O PHE A 58 N ALA A 38 SHEET 5 AA119 TYR A 67 THR A 77 -1 O ARG A 69 N GLU A 57 SHEET 6 AA119 GLY A 80 TRP A 88 -1 O PHE A 84 N LEU A 73 SHEET 7 AA119 LEU A 117 ALA A 128 -1 O LYS A 123 N SER A 83 SHEET 8 AA119 PHE A 131 GLY A 138 -1 O ALA A 135 N TYR A 124 SHEET 9 AA119 GLU A 147 PHE A 157 -1 O TYR A 152 N LYS A 134 SHEET 10 AA119 LEU A 160 VAL A 181 -1 O LEU A 160 N PHE A 157 SHEET 11 AA119 THR A 184 ILE A 205 -1 O ASN A 194 N ASN A 169 SHEET 12 AA119 ALA A 208 VAL A 221 -1 O ILE A 210 N TYR A 203 SHEET 13 AA119 VAL A 227 ALA A 242 -1 O ALA A 236 N GLY A 211 SHEET 14 AA119 THR A 245 ALA A 258 -1 O GLU A 257 N ASP A 229 SHEET 15 AA119 ASP A 263 ALA A 278 -1 O GLU A 264 N GLN A 256 SHEET 16 AA119 ALA A 281 ASN A 299 -1 O VAL A 283 N TYR A 275 SHEET 17 AA119 ALA A 304 TRP A 325 -1 O VAL A 311 N GLY A 292 SHEET 18 AA119 GLY A 9 LEU A 24 -1 N PHE A 23 O PHE A 317 SHEET 19 AA119 THR A 30 ILE A 31 -1 O THR A 30 N LYS A 22 SITE 1 AC1 4 GLU A 127 TRP A 132 LYS A 134 HOH A 531 SITE 1 AC2 4 ASP A 48 LYS A 76 THR A 77 ASN A 78 SITE 1 AC3 2 TYR A 287 HOH A 598 SITE 1 AC4 2 TYR A 323 HOH A 538 SITE 1 AC5 7 THR A 267 ASP A 291 GLY A 292 THR A 293 SITE 2 AC5 7 THR A 294 TYR A 297 HOH A 552 SITE 1 AC6 11 ARG A 18 ARG A 37 TYR A 99 SER A 100 SITE 2 AC6 11 LYS A 300 GLY A 301 ASP A 303 ARG A 322 SITE 3 AC6 11 MES A 411 HOH A 520 HOH A 579 SITE 1 AC7 2 ASN A 47 ASP A 48 SITE 1 AC8 4 LYS A 5 ASP A 7 GLY A 9 TYR A 44 SITE 1 AC9 9 LEU A 17 ARG A 18 THR A 19 VAL A 199 SITE 2 AC9 9 GLY A 201 TYR A 214 GLY A 320 ALA A 321 SITE 3 AC9 9 C8E A 410 SITE 1 AD1 4 SER A 195 ASN A 216 TYR A 275 C8E A 409 SITE 1 AD2 11 ARG A 37 ARG A 69 TRP A 88 ASP A 92 SITE 2 AD2 11 THR A 298 LYS A 300 ASP A 303 C8E A 406 SITE 3 AD2 11 HOH A 501 HOH A 526 HOH A 542 CRYST1 143.880 75.840 49.670 90.00 92.06 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006950 0.000000 0.000250 0.00000 SCALE2 0.000000 0.013186 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020146 0.00000