HEADER HYDROLASE 13-SEP-17 6EHN TITLE STRUCTURAL INSIGHT INTO A PROMISCUOUS CE15 ESTERASE FROM THE MARINE TITLE 2 BACTERIAL METAGENOME COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOHYDRATE ESTERASE MZ0003; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNKNOWN PROKARYOTIC ORGANISM; SOURCE 3 ORGANISM_TAXID: 2725; SOURCE 4 GENE: MZ0003; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ESTERASE, PROTEIN STRUCTURE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.HELLAND,C.DE SANTI,O.GANI,A.K.WILLIAMSON REVDAT 1 21-MAR-18 6EHN 0 JRNL AUTH C.DE SANTI,O.A.GANI,R.HELLAND,A.WILLIAMSON JRNL TITL STRUCTURAL INSIGHT INTO A CE15 ESTERASE FROM THE MARINE JRNL TITL 2 BACTERIAL METAGENOME. JRNL REF SCI REP V. 7 17278 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 29222424 JRNL DOI 10.1038/S41598-017-17677-4 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2077 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3024 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3090 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 315 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : 0.69000 REMARK 3 B12 (A**2) : -0.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.427 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3220 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2957 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4378 ; 2.004 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6779 ; 1.149 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 403 ;14.626 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;37.543 ;23.400 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 500 ;15.067 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;20.476 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 461 ; 0.148 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3718 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 785 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6EHN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91840, 1.28202 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43689 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.59300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER, SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, 24% NACITRATE, PH 6, 0.1 M, REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.44400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.22200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.22200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.44400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 104 REMARK 465 ALA A 105 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 GLN A 45 CG CD OE1 NE2 REMARK 470 LYS A 54 CE NZ REMARK 470 GLU A 88 CG CD OE1 OE2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 ASP A 91 CG OD1 OD2 REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 LYS A 127 CD CE NZ REMARK 470 LYS A 140 CE NZ REMARK 470 LYS A 148 CD CE NZ REMARK 470 ASP A 200 CB CG OD1 OD2 REMARK 470 GLU A 205 CG CD OE1 OE2 REMARK 470 LYS A 206 NZ REMARK 470 LYS A 235 CD CE NZ REMARK 470 LYS A 307 CD CE NZ REMARK 470 LYS A 362 CG CD CE NZ REMARK 470 LYS A 363 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 681 O HOH A 705 1.52 REMARK 500 O HOH A 688 O HOH A 863 2.10 REMARK 500 O HOH A 602 O HOH A 863 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 784 O HOH A 811 4555 1.98 REMARK 500 O HOH A 822 O HOH A 822 4555 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 330 CB THR A 330 CG2 -0.248 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 261 CA - CB - CG ANGL. DEV. = 18.5 DEGREES REMARK 500 ARG A 285 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 297 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 322 CD - NE - CZ ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG A 322 NE - CZ - NH1 ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 322 NE - CZ - NH2 ANGL. DEV. = -8.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 38 -54.27 -125.41 REMARK 500 MET A 51 -62.34 -133.31 REMARK 500 GLU A 61 74.97 -119.20 REMARK 500 ASP A 66 -62.28 8.36 REMARK 500 ALA A 67 33.09 75.78 REMARK 500 LYS A 68 -96.17 -50.76 REMARK 500 ALA A 76 -64.00 32.99 REMARK 500 ALA A 92 91.30 33.16 REMARK 500 ARG A 108 128.75 -37.92 REMARK 500 ASP A 126 114.63 -28.06 REMARK 500 ASP A 126 114.63 -32.95 REMARK 500 ASN A 186 37.06 -93.13 REMARK 500 SER A 243 -129.64 56.95 REMARK 500 ASP A 303 15.61 56.17 REMARK 500 ASN A 368 35.89 77.82 REMARK 500 HIS A 384 107.02 -54.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 73 GLY A 74 -147.79 REMARK 500 GLY A 74 GLY A 75 -42.54 REMARK 500 GLY A 75 ALA A 76 82.51 REMARK 500 GLU A 90 ASP A 91 -59.06 REMARK 500 ASP A 91 ALA A 92 80.93 REMARK 500 TRP A 209 GLY A 210 46.66 REMARK 500 GLY A 210 THR A 211 138.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 210 -10.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 915 DISTANCE = 7.14 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 DBREF1 6EHN A 4 402 UNP CE15_UNKP DBREF2 6EHN A A0A0K2VM55 29 427 SEQRES 1 A 399 GLY PHE ASN TYR ASP GLU ALA GLN VAL PRO LYS TYR THR SEQRES 2 A 399 LEU PRO ASP PRO LEU VAL MET VAL ASP GLY THR LYS VAL SEQRES 3 A 399 THR SER ALA LYS GLN TRP ASN ASP LYS ARG ARG ASP GLU SEQRES 4 A 399 VAL GLN GLN LEU PHE GLU ALA TYR MET TYR GLY LYS VAL SEQRES 5 A 399 PRO ASP GLY GLU THR GLU LEU ILE PHE THR ASP ALA LYS SEQRES 6 A 399 GLY GLU ARG ALA LEU GLY GLY ALA ALA ILE ARG LYS GLN SEQRES 7 A 399 VAL LYS ILE SER PHE GLY GLU LYS GLU ASP ALA PRO ALA SEQRES 8 A 399 MET ASP LEU LEU ILE TYR LEU PRO ALA ASP ALA LYS VAL SEQRES 9 A 399 ARG VAL PRO VAL PHE LEU GLY LEU ASN PHE HIS GLY ASN SEQRES 10 A 399 HIS THR ILE HIS LYS ASP LYS GLU ILE TRP LEU THR GLU SEQRES 11 A 399 SER TRP VAL ARG THR ASN LYS LYS PHE GLY ILE THR LYS SEQRES 12 A 399 ASN LYS ALA ASN GLU LEU SER ARG GLY VAL ALA ALA GLY SEQRES 13 A 399 ARG TRP GLN ILE GLU LYS ALA ILE ALA LYS GLY TYR GLY SEQRES 14 A 399 VAL ALA THR ILE TYR CYS GLY ASP ILE ASP PRO ASP PHE SEQRES 15 A 399 ASN PHE PRO SER ASN GLY ILE GLN ALA TYR TYR TYR LYS SEQRES 16 A 399 LYS ASP GLN THR ILE PRO GLU LYS GLY GLN TRP GLY THR SEQRES 17 A 399 ILE ALA ALA TRP ALA PHE GLY LEU SER CYS ALA MET ASP SEQRES 18 A 399 TYR PHE GLU THR ASP THR ASP ILE ASP HIS LYS LYS VAL SEQRES 19 A 399 ALA VAL LEU GLY HIS SER ARG LEU GLY LYS THR SER LEU SEQRES 20 A 399 TRP ALA GLY ALA ILE ASP THR ARG PHE ALA LEU THR ILE SEQRES 21 A 399 SER ASN CYS SER GLY CYS GLY GLY ALA ALA LEU SER ARG SEQRES 22 A 399 ARG ARG PHE GLY GLU THR VAL ARG ARG ILE ASN THR SER SEQRES 23 A 399 PHE PRO HIS TRP PHE CYS SER ARG PHE HIS GLN TYR ASN SEQRES 24 A 399 ASP LYS GLU ASP LYS LEU PRO ILE ASP GLN HIS MET LEU SEQRES 25 A 399 ILE ALA LEU CYS ALA PRO ARG PRO VAL LEU ILE ASN SER SEQRES 26 A 399 ALA THR GLU ASP LYS TRP ALA ASP PRO HIS GLY GLU PHE SEQRES 27 A 399 LEU ALA ALA GLN GLY ALA ASP ALA VAL TYR ARG MET LEU SEQRES 28 A 399 GLY THR GLY GLY LEU ASP ALA LYS LYS TRP PRO GLU PRO SEQRES 29 A 399 ASN LYS LEU VAL LYS SER THR ILE GLY TYR HIS LEU ARG SEQRES 30 A 399 PRO GLY LYS HIS ASP VAL THR ALA ARG ASP TRP ASP VAL SEQRES 31 A 399 TYR ILE GLU PHE ALA ASP HIS HIS MET HET GOL A 501 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *315(H2 O) HELIX 1 AA1 ASP A 8 VAL A 12 5 5 HELIX 2 AA2 SER A 31 LYS A 38 1 8 HELIX 3 AA3 LYS A 38 MET A 51 1 14 HELIX 4 AA4 LEU A 73 GLY A 75 5 3 HELIX 5 AA5 GLY A 119 ILE A 123 5 5 HELIX 6 AA6 ASN A 150 ARG A 154 5 5 HELIX 7 AA7 ALA A 157 TRP A 161 5 5 HELIX 8 AA8 GLN A 162 LYS A 169 1 8 HELIX 9 AA9 CYS A 178 ASP A 182 1 5 HELIX 10 AB1 GLY A 191 LYS A 198 1 8 HELIX 11 AB2 PRO A 204 GLN A 208 5 5 HELIX 12 AB3 GLY A 210 ASP A 229 1 20 HELIX 13 AB4 SER A 243 ASP A 256 1 14 HELIX 14 AB5 LEU A 274 ARG A 278 5 5 HELIX 15 AB6 THR A 282 PHE A 290 1 9 HELIX 16 AB7 CYS A 295 ASN A 302 5 8 HELIX 17 AB8 LYS A 304 LEU A 308 5 5 HELIX 18 AB9 ASP A 311 CYS A 319 1 9 HELIX 19 AC1 ASP A 332 ALA A 335 5 4 HELIX 20 AC2 ASP A 336 ALA A 347 1 12 HELIX 21 AC3 ALA A 347 LEU A 354 1 8 HELIX 22 AC4 THR A 387 MET A 402 1 16 SHEET 1 AA1 3 LEU A 62 PHE A 64 0 SHEET 2 AA1 3 ALA A 77 PHE A 86 -1 O SER A 85 N ILE A 63 SHEET 3 AA1 3 GLU A 70 ALA A 72 -1 N GLU A 70 O ARG A 79 SHEET 1 AA2 9 LEU A 62 PHE A 64 0 SHEET 2 AA2 9 ALA A 77 PHE A 86 -1 O SER A 85 N ILE A 63 SHEET 3 AA2 9 ALA A 94 PRO A 102 -1 O LEU A 97 N VAL A 82 SHEET 4 AA2 9 GLY A 172 TYR A 177 -1 O VAL A 173 N TYR A 100 SHEET 5 AA2 9 VAL A 109 ASN A 116 1 N ASN A 116 O ILE A 176 SHEET 6 AA2 9 ILE A 232 LEU A 240 1 O ALA A 238 N LEU A 113 SHEET 7 AA2 9 LEU A 261 ASN A 265 1 O ILE A 263 N VAL A 239 SHEET 8 AA2 9 VAL A 324 ALA A 329 1 O LEU A 325 N THR A 262 SHEET 9 AA2 9 ILE A 375 ARG A 380 1 O GLY A 376 N VAL A 324 CISPEP 1 ALA A 320 PRO A 321 0 8.68 SITE 1 AC1 8 SER A 243 ARG A 244 LYS A 247 GLU A 281 SITE 2 AC1 8 ILE A 286 TRP A 334 HOH A 622 HOH A 761 CRYST1 110.212 110.212 78.666 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009073 0.005239 0.000000 0.00000 SCALE2 0.000000 0.010477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012712 0.00000