HEADER SIGNALING PROTEIN 14-SEP-17 6EHP TITLE THE CRYSTAL STRUCTURE OF THE HUMAN LAMTOR COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAGULATOR COMPLEX PROTEIN LAMTOR3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LATE ENDOSOMAL/LYSOSOMAL ADAPTOR AND MAPK AND MTOR ACTIVATOR COMPND 5 3,MEK-BINDING PARTNER 1,MP1,MITOGEN-ACTIVATED PROTEIN KINASE KINASE COMPND 6 1-INTERACTING PROTEIN 1,MITOGEN-ACTIVATED PROTEIN KINASE SCAFFOLD COMPND 7 PROTEIN 1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RAGULATOR COMPLEX PROTEIN LAMTOR2; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: ENDOSOMAL ADAPTOR PROTEIN P14,LATE ENDOSOMAL/LYSOSOMAL MP1- COMPND 13 INTERACTING PROTEIN,LATE ENDOSOMAL/LYSOSOMAL ADAPTOR AND MAPK AND COMPND 14 MTOR ACTIVATOR 2,MITOGEN-ACTIVATED PROTEIN-BINDING PROTEIN- COMPND 15 INTERACTING PROTEIN,MAPBP-INTERACTING PROTEIN,ROADBLOCK DOMAIN- COMPND 16 CONTAINING PROTEIN 3; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 3; COMPND 19 MOLECULE: RAGULATOR COMPLEX PROTEIN LAMTOR5; COMPND 20 CHAIN: C; COMPND 21 SYNONYM: HEPATITIS B VIRUS X-INTERACTING PROTEIN,HBX-INTERACTING COMPND 22 PROTEIN,LATE ENDOSOMAL/LYSOSOMAL ADAPTOR AND MAPK AND MTOR ACTIVATOR COMPND 23 5; COMPND 24 ENGINEERED: YES; COMPND 25 MOL_ID: 4; COMPND 26 MOLECULE: RAGULATOR COMPLEX PROTEIN LAMTOR4; COMPND 27 CHAIN: D; COMPND 28 SYNONYM: LATE ENDOSOMAL/LYSOSOMAL ADAPTOR AND MAPK AND MTOR ACTIVATOR COMPND 29 4; COMPND 30 ENGINEERED: YES; COMPND 31 MOL_ID: 5; COMPND 32 MOLECULE: RAGULATOR COMPLEX PROTEIN LAMTOR1; COMPND 33 CHAIN: E; COMPND 34 SYNONYM: LATE ENDOSOMAL/LYSOSOMAL ADAPTOR AND MAPK AND MTOR ACTIVATOR COMPND 35 1,LIPID RAFT ADAPTOR PROTEIN P18,PROTEIN ASSOCIATED WITH DRMS AND COMPND 36 ENDOSOMES,P27KIP1-RELEASING FACTOR FROM RHOA,P27RF-RHO; COMPND 37 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LAMTOR3, MAP2K1IP1, MAPKSP1, PRO2783; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: LAMTOR2, MAPBPIP, ROBLD3, HSPC003; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 GENE: LAMTOR5, HBXIP, XIP; SOURCE 24 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 25 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 27 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 28 MOL_ID: 4; SOURCE 29 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 30 ORGANISM_COMMON: HUMAN; SOURCE 31 ORGANISM_TAXID: 9606; SOURCE 32 GENE: LAMTOR4, C7ORF59; SOURCE 33 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 34 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 35 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 36 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 37 MOL_ID: 5; SOURCE 38 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 39 ORGANISM_COMMON: HUMAN; SOURCE 40 ORGANISM_TAXID: 9606; SOURCE 41 GENE: LAMTOR1, C11ORF59, PDRO, PP7157; SOURCE 42 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 43 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 44 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 45 EXPRESSION_SYSTEM_CELL_LINE: SF21 KEYWDS SCAFFOLDING COMPLEX, RAG-GTPASE, MTOR, RAGULATOR, MTORC1, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.SCHEFFZEK,A.NASCHBERGER REVDAT 6 18-SEP-19 6EHP 1 REMARK REVDAT 5 24-APR-19 6EHP 1 SOURCE REVDAT 4 20-JUN-18 6EHP 1 SOURCE REMARK REVDAT 3 31-JAN-18 6EHP 1 REMARK REVDAT 2 01-NOV-17 6EHP 1 JRNL REVDAT 1 04-OCT-17 6EHP 0 JRNL AUTH M.E.G.DE ARAUJO,A.NASCHBERGER,B.G.FURNROHR,T.STASYK, JRNL AUTH 2 T.DUNZENDORFER-MATT,S.LECHNER,S.WELTI,L.KREMSER, JRNL AUTH 3 G.SHIVALINGAIAH,M.OFFTERDINGER,H.H.LINDNER,L.A.HUBER, JRNL AUTH 4 K.SCHEFFZEK JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN LYSOSOMAL MTORC1 SCAFFOLD JRNL TITL 2 COMPLEX AND ITS IMPACT ON SIGNALING. JRNL REF SCIENCE V. 358 377 2017 JRNL REFN ESSN 1095-9203 JRNL PMID 28935770 JRNL DOI 10.1126/SCIENCE.AAO1583 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29683 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1539 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2129 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3738 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 71 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.73000 REMARK 3 B22 (A**2) : -0.73000 REMARK 3 B33 (A**2) : 1.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.238 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.091 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3799 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3608 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5147 ; 1.187 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8368 ; 0.880 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 486 ; 5.629 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;37.716 ;24.688 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 662 ;14.429 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.816 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 613 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4199 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 712 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1956 ; 2.699 ; 9.025 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1955 ; 2.699 ; 9.023 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2435 ; 4.525 ;16.850 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2436 ; 4.524 ;16.854 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1843 ; 3.174 ;10.239 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1841 ; 3.171 ;10.233 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2711 ; 5.336 ;18.684 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3900 ; 7.830 ;60.882 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3893 ; 7.806 ;60.821 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): 33.2437 29.5953 10.1581 REMARK 3 T TENSOR REMARK 3 T11: 0.1718 T22: 0.2490 REMARK 3 T33: 0.1370 T12: -0.0024 REMARK 3 T13: -0.0546 T23: 0.1187 REMARK 3 L TENSOR REMARK 3 L11: 1.4948 L22: 0.4315 REMARK 3 L33: 0.5902 L12: 0.1284 REMARK 3 L13: 0.1659 L23: -0.3619 REMARK 3 S TENSOR REMARK 3 S11: 0.1436 S12: -0.4277 S13: -0.4135 REMARK 3 S21: -0.1243 S22: -0.0787 S23: -0.0172 REMARK 3 S31: -0.0169 S32: -0.0077 S33: -0.0649 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 122 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1446 38.8701 8.1126 REMARK 3 T TENSOR REMARK 3 T11: 0.0728 T22: 0.4173 REMARK 3 T33: 0.0612 T12: -0.0077 REMARK 3 T13: 0.0142 T23: 0.0545 REMARK 3 L TENSOR REMARK 3 L11: 2.1401 L22: 0.3928 REMARK 3 L33: 0.2231 L12: 0.1444 REMARK 3 L13: 0.5309 L23: -0.0405 REMARK 3 S TENSOR REMARK 3 S11: 0.2386 S12: -0.3544 S13: -0.0555 REMARK 3 S21: -0.1001 S22: -0.1854 S23: -0.0430 REMARK 3 S31: 0.0736 S32: -0.1677 S33: -0.0533 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 91 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3873 55.7192 -0.7900 REMARK 3 T TENSOR REMARK 3 T11: 0.1582 T22: 0.2052 REMARK 3 T33: 0.0812 T12: 0.0255 REMARK 3 T13: 0.0119 T23: -0.0682 REMARK 3 L TENSOR REMARK 3 L11: 1.5511 L22: 0.3194 REMARK 3 L33: 1.1281 L12: 0.3396 REMARK 3 L13: 0.5397 L23: 0.0619 REMARK 3 S TENSOR REMARK 3 S11: 0.1398 S12: -0.0488 S13: 0.1491 REMARK 3 S21: 0.0181 S22: -0.0459 S23: 0.0995 REMARK 3 S31: -0.0390 S32: -0.0467 S33: -0.0939 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 3 D 94 REMARK 3 ORIGIN FOR THE GROUP (A): 51.7503 57.8780 5.3932 REMARK 3 T TENSOR REMARK 3 T11: 0.1597 T22: 0.2589 REMARK 3 T33: 0.0374 T12: -0.0353 REMARK 3 T13: 0.0128 T23: -0.0582 REMARK 3 L TENSOR REMARK 3 L11: 0.5123 L22: 1.5965 REMARK 3 L33: 1.1883 L12: 0.6536 REMARK 3 L13: 0.0744 L23: 0.5547 REMARK 3 S TENSOR REMARK 3 S11: 0.0560 S12: -0.0818 S13: -0.0001 REMARK 3 S21: 0.0496 S22: -0.1664 S23: 0.0898 REMARK 3 S31: -0.0026 S32: 0.1783 S33: 0.1104 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 80 E 149 REMARK 3 ORIGIN FOR THE GROUP (A): 39.7877 43.5581 2.8229 REMARK 3 T TENSOR REMARK 3 T11: 0.1270 T22: 0.1490 REMARK 3 T33: 0.0128 T12: 0.0105 REMARK 3 T13: 0.0126 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 0.7376 L22: 0.3576 REMARK 3 L33: 0.9838 L12: 0.4628 REMARK 3 L13: 0.2050 L23: 0.0213 REMARK 3 S TENSOR REMARK 3 S11: 0.1134 S12: -0.1205 S13: 0.0171 REMARK 3 S21: 0.0117 S22: -0.0744 S23: 0.0054 REMARK 3 S31: 0.0139 S32: 0.1895 S33: -0.0390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6EHP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200005339. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 256155 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.44000 REMARK 200 R SYM FOR SHELL (I) : 1.54000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% [W/V] PEG 3350, 0.1M TRIS/HCL REMARK 280 PH8.5, 0.2M MGCL2, 3% 2-METHYL-2-PROPANOL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.99200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.99600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.98800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.99200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.98800 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.99600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 HIS A 0 REMARK 465 VAL A 123 REMARK 465 SER A 124 REMARK 465 MET B 0 REMARK 465 GLY B 1 REMARK 465 LEU B 2 REMARK 465 ARG B 3 REMARK 465 ALA B 63 REMARK 465 PHE B 64 REMARK 465 ASN B 65 REMARK 465 GLU B 66 REMARK 465 ALA B 123 REMARK 465 ALA B 124 REMARK 465 SER B 125 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 GLU D 95 REMARK 465 PRO D 96 REMARK 465 ILE D 97 REMARK 465 ASP D 98 REMARK 465 VAL D 99 REMARK 465 SER E 17 REMARK 465 LEU E 18 REMARK 465 MET E 19 REMARK 465 THR E 20 REMARK 465 LEU E 21 REMARK 465 LEU E 22 REMARK 465 LEU E 23 REMARK 465 ASP E 24 REMARK 465 PRO E 25 REMARK 465 SER E 26 REMARK 465 SER E 27 REMARK 465 PRO E 28 REMARK 465 PRO E 29 REMARK 465 THR E 30 REMARK 465 LYS E 31 REMARK 465 ALA E 32 REMARK 465 LEU E 33 REMARK 465 ASN E 34 REMARK 465 GLY E 35 REMARK 465 ALA E 36 REMARK 465 GLU E 37 REMARK 465 PRO E 38 REMARK 465 ASN E 39 REMARK 465 TYR E 40 REMARK 465 HIS E 41 REMARK 465 SER E 42 REMARK 465 LEU E 43 REMARK 465 PRO E 44 REMARK 465 SER E 45 REMARK 465 ALA E 46 REMARK 465 ARG E 47 REMARK 465 THR E 48 REMARK 465 ASP E 49 REMARK 465 GLU E 50 REMARK 465 GLN E 51 REMARK 465 ALA E 52 REMARK 465 LEU E 53 REMARK 465 LEU E 54 REMARK 465 SER E 55 REMARK 465 SER E 56 REMARK 465 ILE E 57 REMARK 465 LEU E 58 REMARK 465 ALA E 59 REMARK 465 LYS E 60 REMARK 465 THR E 61 REMARK 465 ALA E 62 REMARK 465 SER E 63 REMARK 465 ASN E 64 REMARK 465 ILE E 65 REMARK 465 ILE E 66 REMARK 465 ASP E 67 REMARK 465 VAL E 68 REMARK 465 SER E 69 REMARK 465 ALA E 70 REMARK 465 ALA E 71 REMARK 465 ASP E 72 REMARK 465 SER E 73 REMARK 465 GLN E 74 REMARK 465 GLY E 75 REMARK 465 MET E 76 REMARK 465 GLU E 77 REMARK 465 GLN E 78 REMARK 465 HIS E 79 REMARK 465 ALA E 150 REMARK 465 LYS E 151 REMARK 465 GLU E 152 REMARK 465 GLU E 153 REMARK 465 LEU E 154 REMARK 465 VAL E 155 REMARK 465 VAL E 156 REMARK 465 GLN E 157 REMARK 465 PHE E 158 REMARK 465 GLY E 159 REMARK 465 ILE E 160 REMARK 465 PRO E 161 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 66 -162.94 63.03 REMARK 500 ALA B 87 -122.51 54.08 REMARK 500 ASP C 80 -116.58 61.17 REMARK 500 ASN D 35 66.93 33.85 REMARK 500 MET D 59 -156.29 -122.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 101 DBREF 6EHP A 1 124 UNP Q9UHA4 LTOR3_HUMAN 1 124 DBREF 6EHP B 2 125 UNP Q9Y2Q5 LTOR2_HUMAN 2 125 DBREF 6EHP C 1 91 UNP O43504 LTOR5_HUMAN 1 91 DBREF 6EHP D 1 99 UNP Q0VGL1 LTOR4_HUMAN 1 99 DBREF 6EHP E 21 161 UNP Q6IAA8 LTOR1_HUMAN 21 161 SEQADV 6EHP GLY A -2 UNP Q9UHA4 EXPRESSION TAG SEQADV 6EHP ALA A -1 UNP Q9UHA4 EXPRESSION TAG SEQADV 6EHP HIS A 0 UNP Q9UHA4 EXPRESSION TAG SEQADV 6EHP MET B 0 UNP Q9Y2Q5 INITIATING METHIONINE SEQADV 6EHP GLY B 1 UNP Q9Y2Q5 EXPRESSION TAG SEQADV 6EHP SER E 17 UNP Q6IAA8 EXPRESSION TAG SEQADV 6EHP LEU E 18 UNP Q6IAA8 EXPRESSION TAG SEQADV 6EHP MET E 19 UNP Q6IAA8 EXPRESSION TAG SEQADV 6EHP THR E 20 UNP Q6IAA8 EXPRESSION TAG SEQRES 1 A 127 GLY ALA HIS MET ALA ASP ASP LEU LYS ARG PHE LEU TYR SEQRES 2 A 127 LYS LYS LEU PRO SER VAL GLU GLY LEU HIS ALA ILE VAL SEQRES 3 A 127 VAL SER ASP ARG ASP GLY VAL PRO VAL ILE LYS VAL ALA SEQRES 4 A 127 ASN ASP ASN ALA PRO GLU HIS ALA LEU ARG PRO GLY PHE SEQRES 5 A 127 LEU SER THR PHE ALA LEU ALA THR ASP GLN GLY SER LYS SEQRES 6 A 127 LEU GLY LEU SER LYS ASN LYS SER ILE ILE CYS TYR TYR SEQRES 7 A 127 ASN THR TYR GLN VAL VAL GLN PHE ASN ARG LEU PRO LEU SEQRES 8 A 127 VAL VAL SER PHE ILE ALA SER SER SER ALA ASN THR GLY SEQRES 9 A 127 LEU ILE VAL SER LEU GLU LYS GLU LEU ALA PRO LEU PHE SEQRES 10 A 127 GLU GLU LEU ARG GLN VAL VAL GLU VAL SER SEQRES 1 B 126 MET GLY LEU ARG PRO LYS ALA LEU THR GLN VAL LEU SER SEQRES 2 B 126 GLN ALA ASN THR GLY GLY VAL GLN SER THR LEU LEU LEU SEQRES 3 B 126 ASN ASN GLU GLY SER LEU LEU ALA TYR SER GLY TYR GLY SEQRES 4 B 126 ASP THR ASP ALA ARG VAL THR ALA ALA ILE ALA SER ASN SEQRES 5 B 126 ILE TRP ALA ALA TYR ASP ARG ASN GLY ASN GLN ALA PHE SEQRES 6 B 126 ASN GLU ASP ASN LEU LYS PHE ILE LEU MET ASP CYS MET SEQRES 7 B 126 GLU GLY ARG VAL ALA ILE THR ARG VAL ALA ASN LEU LEU SEQRES 8 B 126 LEU CYS MET TYR ALA LYS GLU THR VAL GLY PHE GLY MET SEQRES 9 B 126 LEU LYS ALA LYS ALA GLN ALA LEU VAL GLN TYR LEU GLU SEQRES 10 B 126 GLU PRO LEU THR GLN VAL ALA ALA SER SEQRES 1 C 91 MET GLU ALA THR LEU GLU GLN HIS LEU GLU ASP THR MET SEQRES 2 C 91 LYS ASN PRO SER ILE VAL GLY VAL LEU CYS THR ASP SER SEQRES 3 C 91 GLN GLY LEU ASN LEU GLY CYS ARG GLY THR LEU SER ASP SEQRES 4 C 91 GLU HIS ALA GLY VAL ILE SER VAL LEU ALA GLN GLN ALA SEQRES 5 C 91 ALA LYS LEU THR SER ASP PRO THR ASP ILE PRO VAL VAL SEQRES 6 C 91 CYS LEU GLU SER ASP ASN GLY ASN ILE MET ILE GLN LYS SEQRES 7 C 91 HIS ASP GLY ILE THR VAL ALA VAL HIS LYS MET ALA SER SEQRES 1 D 99 MET THR SER ALA LEU THR GLN GLY LEU GLU ARG ILE PRO SEQRES 2 D 99 ASP GLN LEU GLY TYR LEU VAL LEU SER GLU GLY ALA VAL SEQRES 3 D 99 LEU ALA SER SER GLY ASP LEU GLU ASN ASP GLU GLN ALA SEQRES 4 D 99 ALA SER ALA ILE SER GLU LEU VAL SER THR ALA CYS GLY SEQRES 5 D 99 PHE ARG LEU HIS ARG GLY MET ASN VAL PRO PHE LYS ARG SEQRES 6 D 99 LEU SER VAL VAL PHE GLY GLU HIS THR LEU LEU VAL THR SEQRES 7 D 99 VAL SER GLY GLN ARG VAL PHE VAL VAL LYS ARG GLN ASN SEQRES 8 D 99 ARG GLY ARG GLU PRO ILE ASP VAL SEQRES 1 E 145 SER LEU MET THR LEU LEU LEU ASP PRO SER SER PRO PRO SEQRES 2 E 145 THR LYS ALA LEU ASN GLY ALA GLU PRO ASN TYR HIS SER SEQRES 3 E 145 LEU PRO SER ALA ARG THR ASP GLU GLN ALA LEU LEU SER SEQRES 4 E 145 SER ILE LEU ALA LYS THR ALA SER ASN ILE ILE ASP VAL SEQRES 5 E 145 SER ALA ALA ASP SER GLN GLY MET GLU GLN HIS GLU TYR SEQRES 6 E 145 MET ASP ARG ALA ARG GLN TYR SER THR ARG LEU ALA VAL SEQRES 7 E 145 LEU SER SER SER LEU THR HIS TRP LYS LYS LEU PRO PRO SEQRES 8 E 145 LEU PRO SER LEU THR SER GLN PRO HIS GLN VAL LEU ALA SEQRES 9 E 145 SER GLU PRO ILE PRO PHE SER ASP LEU GLN GLN VAL SER SEQRES 10 E 145 ARG ILE ALA ALA TYR ALA TYR SER ALA LEU SER GLN ILE SEQRES 11 E 145 ARG VAL ASP ALA LYS GLU GLU LEU VAL VAL GLN PHE GLY SEQRES 12 E 145 ILE PRO HET CL D 101 1 HETNAM CL CHLORIDE ION FORMUL 6 CL CL 1- FORMUL 7 HOH *71(H2 O) HELIX 1 AA1 MET A 1 LYS A 11 1 11 HELIX 2 AA2 LYS A 12 VAL A 16 5 5 HELIX 3 AA3 ARG A 46 SER A 51 1 6 HELIX 4 AA4 SER A 51 SER A 61 1 11 HELIX 5 AA5 ASN A 99 LEU A 110 1 12 HELIX 6 AA6 LEU A 110 LEU A 117 1 8 HELIX 7 AA7 ARG A 118 VAL A 121 5 4 HELIX 8 AA8 ALA B 6 GLN B 13 1 8 HELIX 9 AA9 ASP B 41 GLY B 60 1 20 HELIX 10 AB1 GLY B 100 VAL B 122 1 23 HELIX 11 AB2 GLU C 2 LYS C 14 1 13 HELIX 12 AB3 SER C 38 GLU C 40 5 3 HELIX 13 AB4 HIS C 41 LYS C 54 1 14 HELIX 14 AB5 ALA D 4 ARG D 11 1 8 HELIX 15 AB6 ASP D 36 GLY D 52 1 17 HELIX 16 AB7 MET E 82 VAL E 94 1 13 HELIX 17 AB8 LEU E 99 LEU E 105 5 7 HELIX 18 AB9 GLN E 114 SER E 121 1 8 HELIX 19 AC1 PRO E 125 SER E 144 1 20 SHEET 1 AA110 PRO A 31 ALA A 36 0 SHEET 2 AA110 LEU A 19 ASP A 26 -1 N VAL A 24 O VAL A 32 SHEET 3 AA110 LEU A 88 SER A 95 -1 O SER A 91 N VAL A 23 SHEET 4 AA110 TYR A 78 ARG A 85 -1 N VAL A 81 O PHE A 92 SHEET 5 AA110 ASN A 68 TYR A 75 -1 N CYS A 73 O VAL A 80 SHEET 6 AA110 LEU B 69 CYS B 76 -1 O LEU B 73 N ILE A 72 SHEET 7 AA110 GLY B 79 VAL B 86 -1 O GLY B 79 N CYS B 76 SHEET 8 AA110 LEU B 89 ALA B 95 -1 O LEU B 91 N THR B 84 SHEET 9 AA110 VAL B 19 ASN B 26 -1 N LEU B 25 O LEU B 90 SHEET 10 AA110 LEU B 31 GLY B 36 -1 O ALA B 33 N LEU B 24 SHEET 1 AA210 ASN C 30 GLY C 35 0 SHEET 2 AA210 ILE C 18 THR C 24 -1 N CYS C 23 O LEU C 31 SHEET 3 AA210 ILE C 82 MET C 89 -1 O ALA C 85 N LEU C 22 SHEET 4 AA210 GLY C 72 HIS C 79 -1 N HIS C 79 O ILE C 82 SHEET 5 AA210 VAL C 64 SER C 69 -1 N VAL C 65 O ILE C 76 SHEET 6 AA210 ARG D 65 VAL D 69 -1 O ARG D 65 N GLU C 68 SHEET 7 AA210 HIS D 73 SER D 80 -1 O LEU D 75 N VAL D 68 SHEET 8 AA210 ARG D 83 GLN D 90 -1 O PHE D 85 N THR D 78 SHEET 9 AA210 GLN D 15 SER D 22 -1 N LEU D 16 O LYS D 88 SHEET 10 AA210 ALA D 25 GLY D 31 -1 O LEU D 27 N VAL D 20 CISPEP 1 LEU A 86 PRO A 87 0 3.36 SITE 1 AC1 2 ARG D 57 GLY D 58 CRYST1 133.896 133.896 75.984 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007468 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007468 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013161 0.00000