HEADER CYTOKINE 15-SEP-17 6EHZ TITLE NMR SOLUTION STRUCTURE OF MURINE CXCL12 GAMMA ISOFORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: STROMAL CELL-DERIVED FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 22-119; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CXCL12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS STROMALL CELL DERIVED FACTOR 1 GAMMA ISOFORM CHEMOKINE, CYTOKINE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.LAGURI,H.LORTAT-JACOB,J.P.SIMORRE REVDAT 4 14-JUN-23 6EHZ 1 REMARK REVDAT 3 17-MAR-21 6EHZ 1 JRNL REVDAT 2 08-MAY-19 6EHZ 1 COMPND REMARK REVDAT 1 10-OCT-18 6EHZ 0 JRNL AUTH A.PRECHOUX,J.P.SIMORRE,H.LORTAT-JACOB,C.LAGURI JRNL TITL DECIPHERING THE STRUCTURAL ATTRIBUTES OF PROTEIN-HEPARAN JRNL TITL 2 SULFATE INTERACTIONS USING CHEMO-ENZYMATIC APPROACHES AND JRNL TITL 3 NMR SPECTROSCOPY JRNL REF GLYCOBIOLOGY 2021 JRNL REFN ESSN 1460-2423 JRNL DOI 10.1093/GLYCOB/CWAB012 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, ARIA REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. (CNS), LINGE, O'DONOGHUE AND REMARK 3 NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EHZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006639. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.7 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] REMARK 210 CXCL12 GAMMA ISOFORM, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HCCH-TOCSY; 3D H(CCO) REMARK 210 NH; 3D 1H-13C NOESY AROMATIC; 3D REMARK 210 1H-13C NOESY METHYLS REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : 600 DIRECT DRIVE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS, CYANA, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ALA A 40 O VAL A 49 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 5 -71.84 -59.69 REMARK 500 1 SER A 6 21.31 -162.60 REMARK 500 1 SER A 16 36.45 -94.64 REMARK 500 1 LYS A 24 -156.62 -100.76 REMARK 500 1 HIS A 25 119.02 -35.43 REMARK 500 1 PRO A 32 -4.81 -36.53 REMARK 500 1 ASN A 33 48.41 94.81 REMARK 500 1 ASN A 46 -16.22 75.23 REMARK 500 1 ARG A 71 -162.27 -108.02 REMARK 500 1 LYS A 74 -69.46 -137.92 REMARK 500 1 LYS A 77 9.27 -161.25 REMARK 500 1 ARG A 86 -82.91 66.96 REMARK 500 1 LYS A 95 59.70 -100.77 REMARK 500 1 LYS A 97 -46.99 -147.52 REMARK 500 2 SER A 16 37.59 -86.21 REMARK 500 2 LYS A 24 -157.50 -105.12 REMARK 500 2 HIS A 25 116.29 -34.33 REMARK 500 2 PRO A 32 0.64 -47.88 REMARK 500 2 ASN A 33 46.42 90.65 REMARK 500 2 LEU A 36 107.33 -58.92 REMARK 500 2 ASN A 46 23.28 47.06 REMARK 500 2 ARG A 70 -83.02 71.81 REMARK 500 2 GLU A 72 -30.75 -136.58 REMARK 500 2 ILE A 81 -35.08 -176.71 REMARK 500 2 GLN A 94 51.51 -152.63 REMARK 500 3 LEU A 5 -75.21 -137.26 REMARK 500 3 SER A 6 18.89 -141.54 REMARK 500 3 SER A 16 38.08 -92.54 REMARK 500 3 LYS A 24 -158.34 -98.37 REMARK 500 3 HIS A 25 114.73 -35.24 REMARK 500 3 PRO A 32 -0.79 -43.59 REMARK 500 3 ASN A 33 54.46 89.64 REMARK 500 3 ASN A 46 -5.03 71.02 REMARK 500 3 ASN A 67 130.97 -31.49 REMARK 500 3 ARG A 70 -69.39 -149.08 REMARK 500 3 LYS A 74 79.99 62.95 REMARK 500 3 VAL A 75 89.10 -66.50 REMARK 500 3 GLU A 79 -178.51 68.19 REMARK 500 3 LYS A 80 -168.95 63.42 REMARK 500 3 ILE A 81 84.46 58.12 REMARK 500 3 LYS A 85 141.57 68.42 REMARK 500 3 LYS A 88 -38.98 72.79 REMARK 500 3 LYS A 91 -71.37 -128.67 REMARK 500 4 ARG A 8 80.49 58.49 REMARK 500 4 ARG A 12 -171.09 -69.14 REMARK 500 4 LYS A 24 -156.34 -102.23 REMARK 500 4 HIS A 25 119.43 -34.70 REMARK 500 4 PRO A 32 -2.77 -47.36 REMARK 500 4 ASN A 33 44.39 94.43 REMARK 500 4 LEU A 36 109.99 -57.58 REMARK 500 REMARK 500 THIS ENTRY HAS 286 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34176 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURE OF MURINE CXCL12 GAMMA ISOFORM DBREF 6EHZ A 1 98 UNP H7BX38 H7BX38_MOUSE 22 119 SEQRES 1 A 98 LYS PRO VAL SER LEU SER TYR ARG CYS PRO CYS ARG PHE SEQRES 2 A 98 PHE GLU SER HIS ILE ALA ARG ALA ASN VAL LYS HIS LEU SEQRES 3 A 98 LYS ILE LEU ASN THR PRO ASN CYS ALA LEU GLN ILE VAL SEQRES 4 A 98 ALA ARG LEU LYS ASN ASN ASN ARG GLN VAL CYS ILE ASP SEQRES 5 A 98 PRO LYS LEU LYS TRP ILE GLN GLU TYR LEU GLU LYS ALA SEQRES 6 A 98 LEU ASN LYS GLY ARG ARG GLU GLU LYS VAL GLY LYS LYS SEQRES 7 A 98 GLU LYS ILE GLY LYS LYS LYS ARG GLN LYS LYS ARG LYS SEQRES 8 A 98 ALA ALA GLN LYS ARG LYS ASN HELIX 1 AA1 ALA A 19 ALA A 21 5 3 HELIX 2 AA2 TRP A 57 GLY A 69 1 13 SHEET 1 AA1 3 VAL A 23 LEU A 29 0 SHEET 2 AA1 3 GLN A 37 LEU A 42 -1 O ARG A 41 N LYS A 24 SHEET 3 AA1 3 GLN A 48 ILE A 51 -1 O VAL A 49 N ALA A 40 SSBOND 1 CYS A 9 CYS A 34 1555 1555 2.03 SSBOND 2 CYS A 11 CYS A 50 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1