HEADER HYDROLASE 16-SEP-17 6EI1 TITLE CRYSTAL STRUCTURE OF THE COVALENT COMPLEX BETWEEN DEUBIQUITINASE ZUFSP TITLE 2 (ZUP1) AND UBIQUITIN-PA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER WITH UFM1-SPECIFIC PEPTIDASE DOMAIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 232-578; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: POLYUBIQUITIN-B; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZUFSP, C6ORF113; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: UBB; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS KEYWDS K63, UBIQUITIN, DEUBIQUITINASE, CYSTEINE PEPTIDASE, HYDROLASE, ZUP1 EXPDTA X-RAY DIFFRACTION AUTHOR C.PICHLO,U.BAUMANN,K.HOFMANN,T.HERMANNS REVDAT 3 16-OCT-19 6EI1 1 REMARK REVDAT 2 14-MAR-18 6EI1 1 TITLE KEYWDS REVDAT 1 07-MAR-18 6EI1 0 JRNL AUTH T.HERMANNS,C.PICHLO,I.WOIWODE,K.KLOPFFLEISCH,K.F.WITTING, JRNL AUTH 2 H.OVAA,U.BAUMANN,K.HOFMANN JRNL TITL A FAMILY OF UNCONVENTIONAL DEUBIQUITINASES WITH MODULAR JRNL TITL 2 CHAIN SPECIFICITY DETERMINANTS. JRNL REF NAT COMMUN V. 9 799 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29476094 JRNL DOI 10.1038/S41467-018-03148-5 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.430 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 44862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4681 - 4.1727 1.00 3373 151 0.1691 0.1893 REMARK 3 2 4.1727 - 3.3122 1.00 3167 142 0.1500 0.1798 REMARK 3 3 3.3122 - 2.8936 1.00 3108 140 0.1733 0.2115 REMARK 3 4 2.8936 - 2.6290 1.00 3084 138 0.1722 0.1818 REMARK 3 5 2.6290 - 2.4406 1.00 3081 140 0.1659 0.2034 REMARK 3 6 2.4406 - 2.2967 1.00 3047 136 0.1621 0.2244 REMARK 3 7 2.2967 - 2.1817 1.00 3044 138 0.1672 0.1917 REMARK 3 8 2.1817 - 2.0867 1.00 3020 134 0.1681 0.1982 REMARK 3 9 2.0867 - 2.0064 1.00 3013 136 0.1823 0.2351 REMARK 3 10 2.0064 - 1.9371 1.00 3042 137 0.1938 0.2444 REMARK 3 11 1.9371 - 1.8766 1.00 3004 135 0.2071 0.2336 REMARK 3 12 1.8766 - 1.8229 1.00 3006 135 0.2197 0.2636 REMARK 3 13 1.8229 - 1.7749 1.00 3031 136 0.2131 0.2752 REMARK 3 14 1.7749 - 1.7316 0.97 2913 131 0.2284 0.2515 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3341 REMARK 3 ANGLE : 0.709 4504 REMARK 3 CHIRALITY : 0.044 494 REMARK 3 PLANARITY : 0.005 590 REMARK 3 DIHEDRAL : 17.411 1273 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EI1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006572. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44866 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 49.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM MALONATE PH 5, 20 % PEG REMARK 280 3350, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 134.52000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.26000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 100.89000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.63000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 168.15000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 134.52000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 67.26000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.63000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 100.89000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 168.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 232 REMARK 465 ASP A 233 REMARK 465 LEU A 234 REMARK 465 GLN A 235 REMARK 465 LEU A 236 REMARK 465 ALA A 237 REMARK 465 HIS A 238 REMARK 465 GLN A 239 REMARK 465 GLU A 469 REMARK 465 GLY A 470 REMARK 465 GLU A 471 REMARK 465 GLY A 472 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 240 CG CD1 CD2 REMARK 470 GLN A 242 CG CD OE1 NE2 REMARK 470 GLU A 244 CG CD OE1 OE2 REMARK 470 ARG A 248 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 249 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 254 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 277 CG CD OE1 NE2 REMARK 470 ARG A 281 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 291 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 299 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 383 CG CD CE NZ REMARK 470 SER A 468 OG REMARK 470 LYS A 525 CG CD CE NZ REMARK 470 GLN A 526 CG CD OE1 NE2 REMARK 470 LYS A 534 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C GLY B 75 N1 AYE A 601 1.17 REMARK 500 O HOH A 909 O HOH A 926 1.94 REMARK 500 O GLY B 75 N1 AYE A 601 2.09 REMARK 500 O HOH A 916 O HOH A 918 2.10 REMARK 500 O HOH A 873 O HOH A 901 2.11 REMARK 500 O HOH A 790 O HOH A 897 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 718 O HOH A 896 8445 2.16 REMARK 500 O HOH A 861 O HOH A 879 8445 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 345 133.00 -39.80 REMARK 500 TRP A 358 -5.97 -140.89 REMARK 500 LYS A 383 60.89 18.69 REMARK 500 ARG A 504 -0.56 79.75 REMARK 500 ASP A 527 84.40 60.57 REMARK 500 ARG B 72 -176.00 63.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AYE A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI A 603 DBREF 6EI1 A 232 578 UNP Q96AP4 ZUFSP_HUMAN 232 578 DBREF 6EI1 B 1 75 UNP P0CG47 UBB_HUMAN 1 75 SEQRES 1 A 347 GLY ASP LEU GLN LEU ALA HIS GLN LEU GLN GLN GLU GLU SEQRES 2 A 347 ASP ARG LYS ARG ARG SER GLU GLU SER ARG GLN GLU ILE SEQRES 3 A 347 GLU GLU PHE GLN LYS LEU GLN ARG GLN TYR GLY LEU ASP SEQRES 4 A 347 ASN SER GLY GLY TYR LYS GLN GLN GLN LEU ARG ASN MET SEQRES 5 A 347 GLU ILE GLU VAL ASN ARG GLY ARG MET PRO PRO SER GLU SEQRES 6 A 347 PHE HIS ARG ARG LYS ALA ASP MET MET GLU SER LEU ALA SEQRES 7 A 347 LEU GLY PHE ASP ASP GLY LYS THR LYS THR SER GLY ILE SEQRES 8 A 347 ILE GLU ALA LEU HIS ARG TYR TYR GLN ASN ALA ALA THR SEQRES 9 A 347 ASP VAL ARG ARG VAL TRP LEU SER SER VAL VAL ASP HIS SEQRES 10 A 347 PHE HIS SER SER LEU GLY ASP LYS GLY TRP GLY CYS GLY SEQRES 11 A 347 TYR ARG ASN PHE GLN MET LEU LEU SER SER LEU LEU GLN SEQRES 12 A 347 ASN ASP ALA TYR ASN ASP CYS LEU LYS GLY MET LEU ILE SEQRES 13 A 347 PRO CYS ILE PRO LYS ILE GLN SER MET ILE GLU ASP ALA SEQRES 14 A 347 TRP LYS GLU GLY PHE ASP PRO GLN GLY ALA SER GLN LEU SEQRES 15 A 347 ASN ASN ARG LEU GLN GLY THR LYS ALA TRP ILE GLY ALA SEQRES 16 A 347 CYS GLU VAL TYR ILE LEU LEU THR SER LEU ARG VAL LYS SEQRES 17 A 347 CYS HIS ILE VAL ASP PHE HIS LYS SER THR GLY PRO LEU SEQRES 18 A 347 GLY THR HIS PRO ARG LEU PHE GLU TRP ILE LEU ASN TYR SEQRES 19 A 347 TYR SER SER GLU GLY GLU GLY SER PRO LYS VAL VAL CYS SEQRES 20 A 347 THR SER LYS PRO PRO ILE TYR LEU GLN HIS GLN GLY HIS SEQRES 21 A 347 SER ARG THR VAL ILE GLY ILE GLU GLU LYS LYS ASN ARG SEQRES 22 A 347 THR LEU CYS LEU LEU ILE LEU ASP PRO GLY CYS PRO SER SEQRES 23 A 347 ARG GLU MET GLN LYS LEU LEU LYS GLN ASP ILE GLU ALA SEQRES 24 A 347 SER SER LEU LYS GLN LEU ARG LYS SER MET GLY ASN LEU SEQRES 25 A 347 LYS HIS LYS GLN TYR GLN ILE LEU ALA VAL GLU GLY ALA SEQRES 26 A 347 LEU SER LEU GLU GLU LYS LEU ALA ARG ARG GLN ALA SER SEQRES 27 A 347 GLN VAL PHE THR ALA GLU LYS ILE PRO SEQRES 1 B 75 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY HET AYE A 601 9 HET GOL A 602 14 HET MLI A 603 9 HETNAM AYE PROP-2-EN-1-AMINE HETNAM GOL GLYCEROL HETNAM MLI MALONATE ION HETSYN AYE ALLYLAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 AYE C3 H7 N FORMUL 4 GOL C3 H8 O3 FORMUL 5 MLI C3 H2 O4 2- FORMUL 6 HOH *285(H2 O) HELIX 1 AA1 LEU A 240 TYR A 267 1 28 HELIX 2 AA2 GLY A 274 ARG A 289 1 16 HELIX 3 AA3 PRO A 293 GLY A 311 1 19 HELIX 4 AA4 GLY A 321 ALA A 333 1 13 HELIX 5 AA5 GLY A 359 GLN A 374 1 16 HELIX 6 AA6 ASN A 375 ALA A 377 5 3 HELIX 7 AA7 TYR A 378 LYS A 383 1 6 HELIX 8 AA8 CYS A 389 GLY A 404 1 16 HELIX 9 AA9 ASP A 406 LEU A 413 1 8 HELIX 10 AB1 ALA A 426 LEU A 436 1 11 HELIX 11 AB2 GLY A 450 THR A 454 5 5 HELIX 12 AB3 HIS A 455 SER A 467 1 13 HELIX 13 AB4 PRO A 516 GLN A 521 1 6 HELIX 14 AB5 LYS A 522 LYS A 525 5 4 HELIX 15 AB6 GLU A 529 LYS A 534 1 6 HELIX 16 AB7 SER A 539 LEU A 543 5 5 HELIX 17 AB8 SER A 558 SER A 569 1 12 HELIX 18 AB9 THR B 22 GLY B 35 1 14 HELIX 19 AC1 PRO B 37 ASP B 39 5 3 HELIX 20 AC2 LEU B 56 ASN B 60 5 5 SHEET 1 AA1 2 LYS A 318 THR A 319 0 SHEET 2 AA1 2 HIS A 348 PHE A 349 -1 O HIS A 348 N THR A 319 SHEET 1 AA2 5 VAL A 476 CYS A 478 0 SHEET 2 AA2 5 VAL A 337 LEU A 342 1 N LEU A 342 O VAL A 477 SHEET 3 AA2 5 HIS A 491 LYS A 501 -1 O GLU A 500 N ARG A 339 SHEET 4 AA2 5 LEU A 506 LEU A 511 -1 O LEU A 511 N THR A 494 SHEET 5 AA2 5 ARG A 537 LYS A 538 -1 O LYS A 538 N LEU A 508 SHEET 1 AA3 7 VAL A 476 CYS A 478 0 SHEET 2 AA3 7 VAL A 337 LEU A 342 1 N LEU A 342 O VAL A 477 SHEET 3 AA3 7 HIS A 491 LYS A 501 -1 O GLU A 500 N ARG A 339 SHEET 4 AA3 7 ILE A 484 HIS A 488 -1 N ILE A 484 O VAL A 495 SHEET 5 AA3 7 TYR A 548 ALA A 556 -1 O GLN A 549 N GLN A 487 SHEET 6 AA3 7 VAL A 438 PHE A 445 -1 N LYS A 439 O GLU A 554 SHEET 7 AA3 7 GLU A 575 ILE A 577 1 O GLU A 575 N ASP A 444 SHEET 1 AA4 2 ILE A 424 GLY A 425 0 SHEET 2 AA4 2 ARG B 74 GLY B 75 -1 O GLY B 75 N ILE A 424 SHEET 1 AA5 5 THR B 12 GLU B 16 0 SHEET 2 AA5 5 GLN B 2 THR B 7 -1 N ILE B 3 O LEU B 15 SHEET 3 AA5 5 THR B 66 LEU B 71 1 O LEU B 67 N LYS B 6 SHEET 4 AA5 5 GLN B 41 PHE B 45 -1 N ARG B 42 O VAL B 70 SHEET 5 AA5 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 LINK SG CYS A 360 C2 AYE A 601 1555 1555 1.66 CISPEP 1 ILE A 577 PRO A 578 0 -1.04 SITE 1 AC1 6 TRP A 358 CYS A 360 TRP A 423 GLY A 490 SITE 2 AC1 6 HIS A 491 GLY B 75 SITE 1 AC2 9 TYR A 430 HIS A 441 ILE A 442 SER A 569 SITE 2 AC2 9 PHE A 572 THR A 573 HOH A 728 HOH A 746 SITE 3 AC2 9 HOH A 761 SITE 1 AC3 9 GLN A 489 HIS A 545 LYS A 546 HOH A 756 SITE 2 AC3 9 HOH A 773 HOH A 782 HOH A 846 ARG B 42 SITE 3 AC3 9 GLN B 49 CRYST1 84.230 84.230 201.780 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011872 0.006854 0.000000 0.00000 SCALE2 0.000000 0.013709 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004956 0.00000