HEADER RNA BINDING PROTEIN 20-SEP-17 6EJ5 TITLE A CONSERVED STRUCTURAL ELEMENT IN THE RNA HELICASE UPF1 REGULATES ITS TITLE 2 CATALYTIC ACTIVITY IN AN ISOFORM-SPECIFIC MANNER COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATOR OF NONSENSE TRANSCRIPTS 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP-DEPENDENT HELICASE RENT1,NONSENSE MRNA REDUCING FACTOR COMPND 5 1,NORF1,UP-FRAMESHIFT SUPPRESSOR 1 HOMOLOG,HUPF1; COMPND 6 EC: 3.6.4.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UPF1, KIAA0221, RENT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA HELICASE, SF1 SUPERFAMILY, NMD FACTOR, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.GOWRAVARAM,F.BONNEAU,V.D.MACIEJ,S.CHAKRABARTI REVDAT 5 17-JAN-24 6EJ5 1 REMARK REVDAT 4 04-APR-18 6EJ5 1 JRNL REVDAT 3 07-FEB-18 6EJ5 1 JRNL REVDAT 2 31-JAN-18 6EJ5 1 JRNL REMARK REVDAT 1 24-JAN-18 6EJ5 0 JRNL AUTH M.GOWRAVARAM,F.BONNEAU,J.KANAAN,V.D.MACIEJ,F.FIORINI,S.RAJ, JRNL AUTH 2 V.CROQUETTE,H.LE HIR,S.CHAKRABARTI JRNL TITL A CONSERVED STRUCTURAL ELEMENT IN THE RNA HELICASE UPF1 JRNL TITL 2 REGULATES ITS CATALYTIC ACTIVITY IN AN ISOFORM-SPECIFIC JRNL TITL 3 MANNER. JRNL REF NUCLEIC ACIDS RES. V. 46 2648 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 29378013 JRNL DOI 10.1093/NAR/GKY040 REMARK 2 REMARK 2 RESOLUTION. 3.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.286 REMARK 3 R VALUE (WORKING SET) : 0.284 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6200 - 7.3102 1.00 2561 115 0.2247 0.2399 REMARK 3 2 7.3102 - 5.8529 1.00 2556 149 0.2939 0.2854 REMARK 3 3 5.8529 - 5.1282 1.00 2530 146 0.2774 0.2711 REMARK 3 4 5.1282 - 4.6662 1.00 2584 141 0.2494 0.3165 REMARK 3 5 4.6662 - 4.3356 1.00 2510 144 0.2593 0.2716 REMARK 3 6 4.3356 - 4.0824 1.00 2537 126 0.2923 0.3207 REMARK 3 7 4.0824 - 3.8796 1.00 2543 145 0.3348 0.4175 REMARK 3 8 3.8796 - 3.7119 1.00 2569 119 0.3520 0.3528 REMARK 3 9 3.7119 - 3.5699 1.00 2554 130 0.3696 0.4135 REMARK 3 10 3.5699 - 3.4474 1.00 2572 148 0.3921 0.3993 REMARK 3 11 3.4474 - 3.3401 0.99 2495 124 0.4112 0.4517 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.530 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4174 REMARK 3 ANGLE : 0.460 5712 REMARK 3 CHIRALITY : 0.044 672 REMARK 3 PLANARITY : 0.003 754 REMARK 3 DIHEDRAL : 2.102 2469 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EJ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15480 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.340 REMARK 200 RESOLUTION RANGE LOW (A) : 19.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2XZP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M SODIUM MALONATE, 50 MM SODIUM REMARK 280 CITRATE PH 6.2, BATCH MODE, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 73.42600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.42600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 73.42600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.42600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 73.42600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 73.42600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 73.42600 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 73.42600 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 73.42600 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 73.42600 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 73.42600 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 73.42600 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 73.42600 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 73.42600 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 73.42600 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 73.42600 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 73.42600 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 73.42600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 ALA A -4 REMARK 465 ALA A -3 REMARK 465 ASP A -2 REMARK 465 SER A -1 REMARK 465 PRO A 348 REMARK 465 LYS A 349 REMARK 465 THR A 350 REMARK 465 ASP A 351 REMARK 465 SER A 352 REMARK 465 GLY A 353 REMARK 465 ASN A 354 REMARK 465 GLU A 355 REMARK 465 ASP A 356 REMARK 465 LEU A 357 REMARK 465 VAL A 358 REMARK 465 ILE A 359 REMARK 465 GLY A 399 REMARK 465 ASP A 400 REMARK 465 GLU A 401 REMARK 465 ALA A 562 REMARK 465 ILE A 563 REMARK 465 ASP A 564 REMARK 465 SER A 565 REMARK 465 THR A 595 REMARK 465 GLY A 596 REMARK 465 GLU A 597 REMARK 465 LEU A 598 REMARK 465 LYS A 744 REMARK 465 GLY A 745 REMARK 465 PHE A 820 REMARK 465 GLN A 859 REMARK 465 GLY A 860 REMARK 465 ILE A 861 REMARK 465 MET A 922 REMARK 465 GLN A 923 REMARK 465 PHE A 924 REMARK 465 SER A 925 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 295 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 LYS A 311 CE NZ REMARK 470 LYS A 318 CG CD CE NZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 LYS A 321 CG CD CE NZ REMARK 470 SER A 323 OG REMARK 470 GLN A 324 CG CD OE1 NE2 REMARK 470 THR A 325 OG1 CG2 REMARK 470 GLN A 326 CG CD OE1 NE2 REMARK 470 ASP A 327 CG OD1 OD2 REMARK 470 ASN A 328 CG OD1 ND2 REMARK 470 ILE A 329 CG1 CG2 CD1 REMARK 470 THR A 330 OG1 CG2 REMARK 470 VAL A 331 CG1 CG2 REMARK 470 ARG A 332 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 335 CG CD1 CD2 REMARK 470 ASN A 338 CG OD1 ND2 REMARK 470 LYS A 339 CG CD CE NZ REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 THR A 346 OG1 CG2 REMARK 470 LEU A 347 CG CD1 CD2 REMARK 470 ILE A 360 CG1 CG2 CD1 REMARK 470 TRP A 361 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 361 CZ3 CH2 REMARK 470 ARG A 363 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 364 CG OD1 OD2 REMARK 470 ARG A 366 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 367 CG CD1 CD2 REMARK 470 MET A 368 CG SD CE REMARK 470 GLN A 369 CG CD OE1 NE2 REMARK 470 ILE A 373 CG1 CG2 CD1 REMARK 470 CYS A 374 SG REMARK 470 LEU A 375 CG CD1 CD2 REMARK 470 ARG A 376 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 378 CG CD CE NZ REMARK 470 LEU A 381 CG CD1 CD2 REMARK 470 LEU A 384 CG CD1 CD2 REMARK 470 LYS A 386 CG CD CE NZ REMARK 470 ILE A 388 CG1 CG2 CD1 REMARK 470 HIS A 390 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 391 CG1 CG2 REMARK 470 LYS A 393 CG CD CE NZ REMARK 470 VAL A 394 CG1 CG2 REMARK 470 ASP A 396 CG OD1 OD2 REMARK 470 ASN A 397 CG OD1 ND2 REMARK 470 ILE A 402 CG1 CG2 CD1 REMARK 470 GLU A 405 CD OE1 OE2 REMARK 470 ARG A 407 CD NE CZ NH1 NH2 REMARK 470 SER A 408 OG REMARK 470 SER A 409 OG REMARK 470 VAL A 410 CG1 CG2 REMARK 470 VAL A 414 CG1 CG2 REMARK 470 GLU A 415 CG CD OE1 OE2 REMARK 470 VAL A 416 CG1 CG2 REMARK 470 THR A 417 OG1 CG2 REMARK 470 ASN A 419 CG OD1 ND2 REMARK 470 GLN A 421 CG CD OE1 NE2 REMARK 470 VAL A 422 CG1 CG2 REMARK 470 ASP A 423 CG OD1 OD2 REMARK 470 PHE A 424 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 425 CG1 CG2 REMARK 470 LYS A 427 CG CD CE NZ REMARK 470 THR A 429 OG1 CG2 REMARK 470 SER A 430 OG REMARK 470 ARG A 433 CG CD NE CZ NH1 NH2 REMARK 470 SER A 436 OG REMARK 470 LYS A 439 CG CD CE NZ REMARK 470 THR A 440 OG1 CG2 REMARK 470 VAL A 443 CG1 CG2 REMARK 470 GLU A 445 CG CD OE1 OE2 REMARK 470 THR A 446 OG1 CG2 REMARK 470 SER A 447 OG REMARK 470 SER A 449 OG REMARK 470 LYS A 455 CD CE NZ REMARK 470 GLU A 460 CG CD OE1 OE2 REMARK 470 VAL A 461 CG1 CG2 REMARK 470 GLU A 462 CG CD OE1 OE2 REMARK 470 ASP A 463 CG OD1 OD2 REMARK 470 VAL A 464 CG1 CG2 REMARK 470 LYS A 467 NZ REMARK 470 LEU A 470 CG CD1 CD2 REMARK 470 LYS A 472 CG CD CE NZ REMARK 470 ARG A 473 CG CD NE CZ NH1 NH2 REMARK 470 THR A 475 OG1 CG2 REMARK 470 ASP A 481 CG OD1 OD2 REMARK 470 HIS A 484 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 487 CG1 CG2 REMARK 470 THR A 492 OG1 CG2 REMARK 470 VAL A 493 CG1 CG2 REMARK 470 THR A 507 OG1 CG2 REMARK 470 THR A 510 OG1 CG2 REMARK 470 VAL A 511 CG1 CG2 REMARK 470 THR A 512 OG1 CG2 REMARK 470 ARG A 522 CZ NH1 NH2 REMARK 470 GLN A 523 CG CD OE1 NE2 REMARK 470 ASN A 525 CG OD1 ND2 REMARK 470 ILE A 536 CG1 CG2 CD1 REMARK 470 VAL A 538 CG1 CG2 REMARK 470 LYS A 551 CG CD CE NZ REMARK 470 LYS A 558 CG CD CE NZ REMARK 470 ARG A 560 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 561 CG CD OE1 OE2 REMARK 470 ILE A 576 CG1 CG2 CD1 REMARK 470 ARG A 577 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 578 CG OD1 ND2 REMARK 470 ASP A 580 CG OD1 OD2 REMARK 470 SER A 581 OG REMARK 470 GLN A 586 CG CD OE1 NE2 REMARK 470 LYS A 587 CG CD CE NZ REMARK 470 GLN A 589 CD OE1 NE2 REMARK 470 GLN A 590 CG CD OE1 NE2 REMARK 470 LEU A 591 CG CD1 CD2 REMARK 470 LYS A 592 CE NZ REMARK 470 GLU A 594 CG CD OE1 OE2 REMARK 470 SER A 599 OG REMARK 470 SER A 600 OG REMARK 470 GLU A 603 CG CD OE1 OE2 REMARK 470 LYS A 604 CG CD CE NZ REMARK 470 ARG A 607 CD NE CZ NH1 NH2 REMARK 470 LYS A 610 CG CD CE NZ REMARK 470 ARG A 611 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 616 CG CD OE1 OE2 REMARK 470 ASP A 622 CG OD1 OD2 REMARK 470 VAL A 623 CG1 CG2 REMARK 470 ASP A 633 CG OD1 OD2 REMARK 470 LYS A 638 CG CD CE NZ REMARK 470 ARG A 642 CG CD NE CZ NH1 NH2 REMARK 470 SER A 643 OG REMARK 470 THR A 650 OG1 CG2 REMARK 470 THR A 653 OG1 CG2 REMARK 470 VAL A 680 CG1 CG2 REMARK 470 LYS A 684 CG CD CE NZ REMARK 470 LYS A 685 CG CD CE NZ REMARK 470 LYS A 688 CG CD CE NZ REMARK 470 SER A 692 OG REMARK 470 VAL A 701 CG1 CG2 REMARK 470 ARG A 705 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 707 CG1 CG2 CD1 REMARK 470 GLN A 712 CD OE1 NE2 REMARK 470 ARG A 714 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 726 CG1 CG2 CD1 REMARK 470 SER A 731 OG REMARK 470 ASN A 734 CG OD1 ND2 REMARK 470 THR A 737 OG1 CG2 REMARK 470 VAL A 742 CG1 CG2 REMARK 470 LYS A 743 CG CD CE NZ REMARK 470 ASP A 747 CG OD1 OD2 REMARK 470 GLN A 749 CG CD OE1 NE2 REMARK 470 GLN A 752 OE1 NE2 REMARK 470 ASP A 754 CG OD1 OD2 REMARK 470 LYS A 755 CG CD CE NZ REMARK 470 TYR A 760 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 762 OG1 CG2 REMARK 470 GLN A 763 CG CD OE1 NE2 REMARK 470 GLN A 765 CG CD OE1 NE2 REMARK 470 ILE A 768 CG1 CG2 CD1 REMARK 470 SER A 770 OG REMARK 470 SER A 771 OG REMARK 470 THR A 773 OG1 CG2 REMARK 470 SER A 774 OG REMARK 470 ARG A 778 CZ NH1 NH2 REMARK 470 THR A 779 OG1 CG2 REMARK 470 LYS A 786 CE NZ REMARK 470 LYS A 790 CG CD CE NZ REMARK 470 LYS A 793 CG CD CE NZ REMARK 470 LYS A 797 CG CD CE NZ REMARK 470 ASP A 799 CG OD1 OD2 REMARK 470 GLU A 808 CG CD OE1 OE2 REMARK 470 SER A 812 OG REMARK 470 VAL A 815 CG1 CG2 REMARK 470 GLN A 816 CG CD OE1 NE2 REMARK 470 GLN A 819 CG CD OE1 NE2 REMARK 470 SER A 821 OG REMARK 470 SER A 823 OG REMARK 470 LEU A 824 CG CD1 CD2 REMARK 470 HIS A 825 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 826 OG1 CG2 REMARK 470 LEU A 828 CG CD1 CD2 REMARK 470 GLN A 830 CG CD OE1 NE2 REMARK 470 GLU A 831 CG CD OE1 OE2 REMARK 470 SER A 836 OG REMARK 470 GLN A 841 CD OE1 NE2 REMARK 470 ARG A 843 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 845 CE NZ REMARK 470 VAL A 853 CG1 CG2 REMARK 470 ARG A 854 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 856 CG OD1 ND2 REMARK 470 GLU A 857 CG CD OE1 OE2 REMARK 470 HIS A 858 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 864 CG CD1 CD2 REMARK 470 ASN A 865 CG OD1 ND2 REMARK 470 ARG A 868 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 886 CG OD1 ND2 REMARK 470 SER A 891 OG REMARK 470 LYS A 892 CG CD CE NZ REMARK 470 LEU A 895 CG CD1 CD2 REMARK 470 ASN A 897 CG OD1 ND2 REMARK 470 LEU A 899 CG CD1 CD2 REMARK 470 LYS A 904 CG CD CE NZ REMARK 470 LYS A 907 CG CD CE NZ REMARK 470 GLU A 911 CG CD OE1 OE2 REMARK 470 ASN A 915 CG OD1 ND2 REMARK 470 ASN A 916 CG OD1 ND2 REMARK 470 LEU A 917 CG CD1 CD2 REMARK 470 GLU A 919 CD OE1 OE2 REMARK 470 SER A 920 OG REMARK 470 LEU A 921 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 673 OH TYR A 728 2.02 REMARK 500 O LYS A 509 OG SER A 513 2.11 REMARK 500 OD1 ASN A 483 OG SER A 485 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 365 7.36 -66.11 REMARK 500 ILE A 392 -60.53 -129.26 REMARK 500 ALA A 631 -3.35 84.44 REMARK 500 PRO A 756 67.73 -68.26 REMARK 500 TYR A 760 98.39 -69.44 REMARK 500 LYS A 793 92.69 -69.46 REMARK 500 VAL A 853 -57.47 73.98 REMARK 500 REMARK 500 REMARK: NULL DBREF 6EJ5 A 295 925 UNP Q92900 RENT1_HUMAN 295 925 SEQADV 6EJ5 GLY A -5 UNP Q92900 EXPRESSION TAG SEQADV 6EJ5 ALA A -4 UNP Q92900 EXPRESSION TAG SEQADV 6EJ5 ALA A -3 UNP Q92900 EXPRESSION TAG SEQADV 6EJ5 ASP A -2 UNP Q92900 EXPRESSION TAG SEQADV 6EJ5 SER A -1 UNP Q92900 EXPRESSION TAG SEQADV 6EJ5 MET A 0 UNP Q92900 EXPRESSION TAG SEQRES 1 A 637 GLY ALA ALA ASP SER MET ARG TYR GLU ASP ALA TYR GLN SEQRES 2 A 637 TYR GLN ASN ILE PHE GLY PRO LEU VAL LYS LEU GLU ALA SEQRES 3 A 637 ASP TYR ASP LYS LYS LEU LYS GLU SER GLN THR GLN ASP SEQRES 4 A 637 ASN ILE THR VAL ARG TRP ASP LEU GLY LEU ASN LYS LYS SEQRES 5 A 637 ARG ILE ALA TYR PHE THR LEU PRO LYS THR ASP SER GLY SEQRES 6 A 637 ASN GLU ASP LEU VAL ILE ILE TRP LEU ARG ASP MET ARG SEQRES 7 A 637 LEU MET GLN GLY ASP GLU ILE CYS LEU ARG TYR LYS GLY SEQRES 8 A 637 ASP LEU ALA PRO LEU TRP LYS GLY ILE GLY HIS VAL ILE SEQRES 9 A 637 LYS VAL PRO ASP ASN TYR GLY ASP GLU ILE ALA ILE GLU SEQRES 10 A 637 LEU ARG SER SER VAL GLY ALA PRO VAL GLU VAL THR HIS SEQRES 11 A 637 ASN PHE GLN VAL ASP PHE VAL TRP LYS SER THR SER PHE SEQRES 12 A 637 ASP ARG MET GLN SER ALA LEU LYS THR PHE ALA VAL ASP SEQRES 13 A 637 GLU THR SER VAL SER GLY TYR ILE TYR HIS LYS LEU LEU SEQRES 14 A 637 GLY HIS GLU VAL GLU ASP VAL ILE ILE LYS CYS GLN LEU SEQRES 15 A 637 PRO LYS ARG PHE THR ALA GLN GLY LEU PRO ASP LEU ASN SEQRES 16 A 637 HIS SER GLN VAL TYR ALA VAL LYS THR VAL LEU GLN ARG SEQRES 17 A 637 PRO LEU SER LEU ILE GLN GLY PRO PRO GLY THR GLY LYS SEQRES 18 A 637 THR VAL THR SER ALA THR ILE VAL TYR HIS LEU ALA ARG SEQRES 19 A 637 GLN GLY ASN GLY PRO VAL LEU VAL CYS ALA PRO SER ASN SEQRES 20 A 637 ILE ALA VAL ASP GLN LEU THR GLU LYS ILE HIS GLN THR SEQRES 21 A 637 GLY LEU LYS VAL VAL ARG LEU CYS ALA LYS SER ARG GLU SEQRES 22 A 637 ALA ILE ASP SER PRO VAL SER PHE LEU ALA LEU HIS ASN SEQRES 23 A 637 GLN ILE ARG ASN MET ASP SER MET PRO GLU LEU GLN LYS SEQRES 24 A 637 LEU GLN GLN LEU LYS ASP GLU THR GLY GLU LEU SER SER SEQRES 25 A 637 ALA ASP GLU LYS ARG TYR ARG ALA LEU LYS ARG THR ALA SEQRES 26 A 637 GLU ARG GLU LEU LEU MET ASN ALA ASP VAL ILE CYS CYS SEQRES 27 A 637 THR CYS VAL GLY ALA GLY ASP PRO ARG LEU ALA LYS MET SEQRES 28 A 637 GLN PHE ARG SER ILE LEU ILE ASP GLU SER THR GLN ALA SEQRES 29 A 637 THR GLU PRO GLU CYS MET VAL PRO VAL VAL LEU GLY ALA SEQRES 30 A 637 LYS GLN LEU ILE LEU VAL GLY ASP HIS CYS GLN LEU GLY SEQRES 31 A 637 PRO VAL VAL MET CYS LYS LYS ALA ALA LYS ALA GLY LEU SEQRES 32 A 637 SER GLN SER LEU PHE GLU ARG LEU VAL VAL LEU GLY ILE SEQRES 33 A 637 ARG PRO ILE ARG LEU GLN VAL GLN TYR ARG MET HIS PRO SEQRES 34 A 637 ALA LEU SER ALA PHE PRO SER ASN ILE PHE TYR GLU GLY SEQRES 35 A 637 SER LEU GLN ASN GLY VAL THR ALA ALA ASP ARG VAL LYS SEQRES 36 A 637 LYS GLY PHE ASP PHE GLN TRP PRO GLN PRO ASP LYS PRO SEQRES 37 A 637 MET PHE PHE TYR VAL THR GLN GLY GLN GLU GLU ILE ALA SEQRES 38 A 637 SER SER GLY THR SER TYR LEU ASN ARG THR GLU ALA ALA SEQRES 39 A 637 ASN VAL GLU LYS ILE THR THR LYS LEU LEU LYS ALA GLY SEQRES 40 A 637 ALA LYS PRO ASP GLN ILE GLY ILE ILE THR PRO TYR GLU SEQRES 41 A 637 GLY GLN ARG SER TYR LEU VAL GLN TYR MET GLN PHE SER SEQRES 42 A 637 GLY SER LEU HIS THR LYS LEU TYR GLN GLU VAL GLU ILE SEQRES 43 A 637 ALA SER VAL ASP ALA PHE GLN GLY ARG GLU LYS ASP PHE SEQRES 44 A 637 ILE ILE LEU SER CYS VAL ARG ALA ASN GLU HIS GLN GLY SEQRES 45 A 637 ILE GLY PHE LEU ASN ASP PRO ARG ARG LEU ASN VAL ALA SEQRES 46 A 637 LEU THR ARG ALA ARG TYR GLY VAL ILE ILE VAL GLY ASN SEQRES 47 A 637 PRO LYS ALA LEU SER LYS GLN PRO LEU TRP ASN HIS LEU SEQRES 48 A 637 LEU ASN TYR TYR LYS GLU GLN LYS VAL LEU VAL GLU GLY SEQRES 49 A 637 PRO LEU ASN ASN LEU ARG GLU SER LEU MET GLN PHE SER FORMUL 2 HOH *3(H2 O) HELIX 1 AA1 ASP A 298 SER A 323 1 26 HELIX 2 AA2 SER A 428 VAL A 443 1 16 HELIX 3 AA3 SER A 449 LEU A 457 1 9 HELIX 4 AA4 ASN A 483 GLN A 495 1 13 HELIX 5 AA5 GLY A 508 GLN A 523 1 16 HELIX 6 AA6 ILE A 536 GLN A 547 1 12 HELIX 7 AA7 ALA A 571 ILE A 576 1 6 HELIX 8 AA8 MET A 582 LYS A 592 1 11 HELIX 9 AA9 SER A 600 MET A 619 1 20 HELIX 10 AB1 GLU A 648 ALA A 652 5 5 HELIX 11 AB2 THR A 653 VAL A 662 1 10 HELIX 12 AB3 CYS A 683 GLY A 690 1 8 HELIX 13 AB4 SER A 694 GLY A 703 1 10 HELIX 14 AB5 SER A 720 TYR A 728 1 9 HELIX 15 AB6 ARG A 778 LEU A 791 1 14 HELIX 16 AB7 LYS A 797 ASP A 799 5 3 HELIX 17 AB8 TYR A 807 MET A 818 1 12 HELIX 18 AB9 SER A 836 PHE A 840 5 5 HELIX 19 AC1 ASP A 866 THR A 875 1 10 HELIX 20 AC2 ASN A 886 SER A 891 1 6 HELIX 21 AC3 GLN A 893 GLN A 906 1 14 SHEET 1 AA1 6 VAL A 331 ASP A 334 0 SHEET 2 AA1 6 ILE A 342 PHE A 345 -1 O TYR A 344 N ARG A 332 SHEET 3 AA1 6 ALA A 403 ARG A 407 -1 O GLU A 405 N ALA A 343 SHEET 4 AA1 6 TRP A 385 VAL A 391 -1 N HIS A 390 O LEU A 406 SHEET 5 AA1 6 GLU A 372 TYR A 377 -1 N TYR A 377 O TRP A 385 SHEET 6 AA1 6 PHE A 420 PHE A 424 -1 O GLN A 421 N ARG A 376 SHEET 1 AA2 7 VAL A 552 ARG A 554 0 SHEET 2 AA2 7 VAL A 623 THR A 627 1 O VAL A 623 N VAL A 553 SHEET 3 AA2 7 LEU A 529 ALA A 532 1 N VAL A 530 O CYS A 626 SHEET 4 AA2 7 SER A 643 ILE A 646 1 O LEU A 645 N LEU A 529 SHEET 5 AA2 7 GLN A 667 GLY A 672 1 O VAL A 671 N ILE A 646 SHEET 6 AA2 7 LEU A 498 GLN A 502 1 N ILE A 501 O LEU A 670 SHEET 7 AA2 7 ILE A 707 ARG A 708 1 O ILE A 707 N LEU A 500 SHEET 1 AA3 5 MET A 757 VAL A 761 0 SHEET 2 AA3 5 ALA A 877 GLY A 885 1 O ILE A 883 N PHE A 758 SHEET 3 AA3 5 LYS A 845 SER A 851 1 N ASP A 846 O TYR A 879 SHEET 4 AA3 5 ILE A 801 ILE A 804 1 N GLY A 802 O PHE A 847 SHEET 5 AA3 5 GLU A 833 ALA A 835 1 O GLU A 833 N ILE A 803 SHEET 1 AA4 2 GLU A 766 GLU A 767 0 SHEET 2 AA4 2 LEU A 776 ASN A 777 -1 O LEU A 776 N GLU A 767 SHEET 1 AA5 2 VAL A 910 GLU A 911 0 SHEET 2 AA5 2 ARG A 918 GLU A 919 -1 O ARG A 918 N GLU A 911 CRYST1 146.852 146.852 146.852 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006810 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006810 0.00000