HEADER CELL ADHESION 22-SEP-17 6EJM TITLE CRYSTAL STRUCTURE OF HUMAN CD81 LARGE EXTRACELLULAR LOOP IN COMPLEX TITLE 2 WITH SINGLE CHAIN FV FRAGMENT 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD81 ANTIGEN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 26 KDA CELL SURFACE PROTEIN TAPA-1,TARGET OF THE COMPND 5 ANTIPROLIFERATIVE ANTIBODY 1,TETRASPANIN-28,TSPAN-28; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SINGLE CHAIN FV FRAGMENT; COMPND 9 CHAIN: H, I; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD81, TAPA1, TSPAN28; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HELICAL BUNDLE, ANTIBODY-ANTIGEN COMPLEX, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR A.KUGLSTATTER,S.F.HARRIS,A.VILLASENOR REVDAT 2 20-JUN-18 6EJM 1 JRNL REVDAT 1 30-MAY-18 6EJM 0 JRNL AUTH B.NELSON,J.ADAMS,A.KUGLSTATTER,Z.LI,S.F.HARRIS,Y.LIU, JRNL AUTH 2 S.BOHINI,H.MA,K.KLUMPP,J.GAO,S.S.SIDHU JRNL TITL STRUCTURE-GUIDED COMBINATORIAL ENGINEERING FACILITATES JRNL TITL 2 AFFINITY AND SPECIFICITY OPTIMIZATION OF ANTI-CD81 JRNL TITL 3 ANTIBODIES. JRNL REF J. MOL. BIOL. V. 430 2139 2018 JRNL REFN ESSN 1089-8638 JRNL PMID 29778602 JRNL DOI 10.1016/J.JMB.2018.05.018 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 85.1 REMARK 3 NUMBER OF REFLECTIONS : 38497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2064 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 895 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 26.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4843 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 229 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.51000 REMARK 3 B22 (A**2) : 0.82000 REMARK 3 B33 (A**2) : 0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.262 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.233 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.573 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4941 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6691 ; 1.973 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 627 ; 7.267 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;37.240 ;24.330 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 836 ;19.554 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;22.124 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 771 ; 0.140 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3632 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3129 ; 1.128 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5033 ; 2.123 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1812 ; 3.190 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1658 ; 5.139 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EJM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40627 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 41.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.1 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 30.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43100 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, 1.75 M AMMONIUM REMARK 280 SULFATE, 1 M SODIUM CHLORIDE, PH 6.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.67550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.33300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.25100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.33300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.67550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.25100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 110 REMARK 465 SER A 111 REMARK 465 GLY A 112 REMARK 465 ASP A 138 REMARK 465 ASP A 139 REMARK 465 HIS A 206 REMARK 465 HIS A 207 REMARK 465 HIS A 208 REMARK 465 GLY B 110 REMARK 465 SER B 111 REMARK 465 GLY B 112 REMARK 465 ASP B 138 REMARK 465 ASP B 139 REMARK 465 ALA B 140 REMARK 465 HIS B 204 REMARK 465 HIS B 205 REMARK 465 HIS B 206 REMARK 465 HIS B 207 REMARK 465 HIS B 208 REMARK 465 ALA H 38 REMARK 465 GLU H 39 REMARK 465 GLY H 157 REMARK 465 GLY H 158 REMARK 465 SER H 159 REMARK 465 GLY H 160 REMARK 465 GLY H 161 REMARK 465 GLY H 162 REMARK 465 GLY H 163 REMARK 465 SER H 164 REMARK 465 GLY H 165 REMARK 465 GLY H 166 REMARK 465 GLY H 167 REMARK 465 GLY H 168 REMARK 465 SER H 169 REMARK 465 GLY H 170 REMARK 465 GLY H 171 REMARK 465 GLY H 172 REMARK 465 GLY H 173 REMARK 465 SER H 174 REMARK 465 ALA I 38 REMARK 465 GLU I 39 REMARK 465 GLY I 155 REMARK 465 GLY I 156 REMARK 465 GLY I 157 REMARK 465 GLY I 158 REMARK 465 SER I 159 REMARK 465 GLY I 160 REMARK 465 GLY I 161 REMARK 465 GLY I 162 REMARK 465 GLY I 163 REMARK 465 SER I 164 REMARK 465 GLY I 165 REMARK 465 GLY I 166 REMARK 465 GLY I 167 REMARK 465 GLY I 168 REMARK 465 SER I 169 REMARK 465 GLY I 170 REMARK 465 GLY I 171 REMARK 465 GLY I 172 REMARK 465 GLY I 173 REMARK 465 SER I 174 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP I 207 OH TYR I 211 2.07 REMARK 500 OD2 ASP H 207 OH TYR H 211 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU H 260 CG GLU H 260 CD 0.093 REMARK 500 GLU I 44 CG GLU I 44 CD -0.099 REMARK 500 CYS I 60 CB CYS I 60 SG -0.113 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG H 76 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 MET H 178 CG - SD - CE ANGL. DEV. = -10.8 DEGREES REMARK 500 LEU H 212 CA - CB - CG ANGL. DEV. = -16.1 DEGREES REMARK 500 LEU H 215 CA - CB - CG ANGL. DEV. = 17.4 DEGREES REMARK 500 LEU I 56 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 ARG I 76 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 LEU I 215 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 LEU I 226 CB - CG - CD1 ANGL. DEV. = -11.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 162 67.49 -118.48 REMARK 500 SER A 177 -68.49 -109.86 REMARK 500 VAL B 114 118.17 -25.93 REMARK 500 ASP B 155 65.76 71.09 REMARK 500 LEU B 162 56.48 -140.98 REMARK 500 SER B 177 -99.59 -66.96 REMARK 500 PRO H 52 134.62 -38.06 REMARK 500 LYS H 81 31.26 73.11 REMARK 500 ALA H 87 149.79 -175.46 REMARK 500 SER H 123 47.08 36.40 REMARK 500 ILE H 189 122.00 -29.15 REMARK 500 ASP H 207 -35.46 -8.70 REMARK 500 VAL H 230 -54.04 79.93 REMARK 500 SER I 136 53.35 -92.02 REMARK 500 ASP I 207 -33.12 -22.88 REMARK 500 VAL I 230 -54.03 71.98 REMARK 500 ARG I 256 102.85 50.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR H 206 ASP H 207 147.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DFW RELATED DB: PDB REMARK 900 RELATED ID: 6EJG RELATED DB: PDB DBREF 6EJM A 112 202 UNP P60033 CD81_HUMAN 112 202 DBREF 6EJM B 112 202 UNP P60033 CD81_HUMAN 112 202 DBREF 6EJM H 38 286 PDB 6EJM 6EJM 38 286 DBREF 6EJM I 38 286 PDB 6EJM 6EJM 38 286 SEQADV 6EJM GLY A 110 UNP P60033 EXPRESSION TAG SEQADV 6EJM SER A 111 UNP P60033 EXPRESSION TAG SEQADV 6EJM HIS A 203 UNP P60033 EXPRESSION TAG SEQADV 6EJM HIS A 204 UNP P60033 EXPRESSION TAG SEQADV 6EJM HIS A 205 UNP P60033 EXPRESSION TAG SEQADV 6EJM HIS A 206 UNP P60033 EXPRESSION TAG SEQADV 6EJM HIS A 207 UNP P60033 EXPRESSION TAG SEQADV 6EJM HIS A 208 UNP P60033 EXPRESSION TAG SEQADV 6EJM GLY B 110 UNP P60033 EXPRESSION TAG SEQADV 6EJM SER B 111 UNP P60033 EXPRESSION TAG SEQADV 6EJM HIS B 203 UNP P60033 EXPRESSION TAG SEQADV 6EJM HIS B 204 UNP P60033 EXPRESSION TAG SEQADV 6EJM HIS B 205 UNP P60033 EXPRESSION TAG SEQADV 6EJM HIS B 206 UNP P60033 EXPRESSION TAG SEQADV 6EJM HIS B 207 UNP P60033 EXPRESSION TAG SEQADV 6EJM HIS B 208 UNP P60033 EXPRESSION TAG SEQRES 1 A 99 GLY SER GLY PHE VAL ASN LYS ASP GLN ILE ALA LYS ASP SEQRES 2 A 99 VAL LYS GLN PHE TYR ASP GLN ALA LEU GLN GLN ALA VAL SEQRES 3 A 99 VAL ASP ASP ASP ALA ASN ASN ALA LYS ALA VAL VAL LYS SEQRES 4 A 99 THR PHE HIS GLU THR LEU ASP CYS CYS GLY SER SER THR SEQRES 5 A 99 LEU THR ALA LEU THR THR SER VAL LEU LYS ASN ASN LEU SEQRES 6 A 99 CYS PRO SER GLY SER ASN ILE ILE SER ASN LEU PHE LYS SEQRES 7 A 99 GLU ASP CYS HIS GLN LYS ILE ASP ASP LEU PHE SER GLY SEQRES 8 A 99 LYS LEU HIS HIS HIS HIS HIS HIS SEQRES 1 B 99 GLY SER GLY PHE VAL ASN LYS ASP GLN ILE ALA LYS ASP SEQRES 2 B 99 VAL LYS GLN PHE TYR ASP GLN ALA LEU GLN GLN ALA VAL SEQRES 3 B 99 VAL ASP ASP ASP ALA ASN ASN ALA LYS ALA VAL VAL LYS SEQRES 4 B 99 THR PHE HIS GLU THR LEU ASP CYS CYS GLY SER SER THR SEQRES 5 B 99 LEU THR ALA LEU THR THR SER VAL LEU LYS ASN ASN LEU SEQRES 6 B 99 CYS PRO SER GLY SER ASN ILE ILE SER ASN LEU PHE LYS SEQRES 7 B 99 GLU ASP CYS HIS GLN LYS ILE ASP ASP LEU PHE SER GLY SEQRES 8 B 99 LYS LEU HIS HIS HIS HIS HIS HIS SEQRES 1 H 249 ALA GLU VAL MET LEU VAL GLU SER GLY GLY GLY PHE VAL SEQRES 2 H 249 LYS PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER SEQRES 3 H 249 GLY PHE THR PHE ARG SER TYR ILE MET SER TRP VAL ARG SEQRES 4 H 249 GLN THR PRO GLU LYS ARG LEU GLU TRP VAL ALA THR ILE SEQRES 5 H 249 SER GLY GLY GLY GLY ASN THR TYR TYR PRO ASP SER VAL SEQRES 6 H 249 LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SEQRES 7 H 249 THR LEU TYR LEU GLN LEU SER SER LEU ARG SER GLU ASP SEQRES 8 H 249 THR ALA LEU TYR TYR CYS ALA SER LEU THR ALA VAL GLY SEQRES 9 H 249 ASP TYR TRP GLY GLN GLY THR SER VAL THR VAL SER SER SEQRES 10 H 249 GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY GLY SEQRES 11 H 249 GLY SER GLY GLY GLY GLY SER ASP VAL VAL MET THR GLN SEQRES 12 H 249 THR PRO LEU THR LEU SER VAL THR ILE GLY GLN PRO ALA SEQRES 13 H 249 SER ILE SER CYS LYS SER SER GLN SER LEU PHE ASP THR SEQRES 14 H 249 ASP GLY LYS THR TYR LEU THR TRP LEU LEU GLN ARG PRO SEQRES 15 H 249 GLY GLN SER PRO LYS ARG LEU ILE TYR LEU VAL SER LYS SEQRES 16 H 249 LEU ALA SER GLY VAL PRO ASP ARG PHE THR GLY SER GLY SEQRES 17 H 249 SER GLY THR ASP PHE THR LEU LYS ILE SER ARG VAL GLU SEQRES 18 H 249 ALA GLU ASP LEU GLY VAL TYR TYR CYS LEU GLN GLY THR SEQRES 19 H 249 HIS PHE PRO LEU THR PHE GLY ALA GLY THR LYS LEU ASP SEQRES 20 H 249 LEU LYS SEQRES 1 I 249 ALA GLU VAL MET LEU VAL GLU SER GLY GLY GLY PHE VAL SEQRES 2 I 249 LYS PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER SEQRES 3 I 249 GLY PHE THR PHE ARG SER TYR ILE MET SER TRP VAL ARG SEQRES 4 I 249 GLN THR PRO GLU LYS ARG LEU GLU TRP VAL ALA THR ILE SEQRES 5 I 249 SER GLY GLY GLY GLY ASN THR TYR TYR PRO ASP SER VAL SEQRES 6 I 249 LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SEQRES 7 I 249 THR LEU TYR LEU GLN LEU SER SER LEU ARG SER GLU ASP SEQRES 8 I 249 THR ALA LEU TYR TYR CYS ALA SER LEU THR ALA VAL GLY SEQRES 9 I 249 ASP TYR TRP GLY GLN GLY THR SER VAL THR VAL SER SER SEQRES 10 I 249 GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY GLY SEQRES 11 I 249 GLY SER GLY GLY GLY GLY SER ASP VAL VAL MET THR GLN SEQRES 12 I 249 THR PRO LEU THR LEU SER VAL THR ILE GLY GLN PRO ALA SEQRES 13 I 249 SER ILE SER CYS LYS SER SER GLN SER LEU PHE ASP THR SEQRES 14 I 249 ASP GLY LYS THR TYR LEU THR TRP LEU LEU GLN ARG PRO SEQRES 15 I 249 GLY GLN SER PRO LYS ARG LEU ILE TYR LEU VAL SER LYS SEQRES 16 I 249 LEU ALA SER GLY VAL PRO ASP ARG PHE THR GLY SER GLY SEQRES 17 I 249 SER GLY THR ASP PHE THR LEU LYS ILE SER ARG VAL GLU SEQRES 18 I 249 ALA GLU ASP LEU GLY VAL TYR TYR CYS LEU GLN GLY THR SEQRES 19 I 249 HIS PHE PRO LEU THR PHE GLY ALA GLY THR LYS LEU ASP SEQRES 20 I 249 LEU LYS FORMUL 5 HOH *229(H2 O) HELIX 1 AA1 ASN A 115 VAL A 135 1 21 HELIX 2 AA2 ASN A 141 LEU A 154 1 14 HELIX 3 AA3 LEU A 162 LYS A 171 1 10 HELIX 4 AA4 ASP A 189 SER A 199 1 11 HELIX 5 AA5 ASN B 115 ASP B 137 1 23 HELIX 6 AA6 ASN B 142 ASP B 155 1 14 HELIX 7 AA7 SER B 159 THR B 161 5 3 HELIX 8 AA8 LEU B 162 SER B 168 1 7 HELIX 9 AA9 VAL B 169 ASN B 173 5 5 HELIX 10 AB1 ASP B 189 SER B 199 1 11 HELIX 11 AB2 THR H 66 TYR H 70 5 5 HELIX 12 AB3 ASN H 112 LYS H 114 5 3 HELIX 13 AB4 ARG H 125 THR H 129 5 5 HELIX 14 AB5 GLU H 258 LEU H 262 5 5 HELIX 15 AB6 THR I 66 TYR I 70 5 5 HELIX 16 AB7 ARG I 125 THR I 129 5 5 SHEET 1 AA1 4 MET H 41 SER H 45 0 SHEET 2 AA1 4 LEU H 56 SER H 63 -1 O SER H 59 N SER H 45 SHEET 3 AA1 4 THR H 116 LEU H 121 -1 O LEU H 121 N LEU H 56 SHEET 4 AA1 4 THR H 107 ASP H 111 -1 N SER H 109 O TYR H 118 SHEET 1 AA2 6 GLY H 48 VAL H 50 0 SHEET 2 AA2 6 THR H 148 VAL H 152 1 O SER H 149 N GLY H 48 SHEET 3 AA2 6 ALA H 130 ALA H 135 -1 N TYR H 132 O THR H 148 SHEET 4 AA2 6 MET H 72 GLN H 77 -1 N VAL H 75 O TYR H 133 SHEET 5 AA2 6 LEU H 83 ILE H 89 -1 O GLU H 84 N ARG H 76 SHEET 6 AA2 6 THR H 96 TYR H 97 -1 O TYR H 97 N THR H 88 SHEET 1 AA3 4 MET H 178 THR H 181 0 SHEET 2 AA3 4 ALA H 193 SER H 199 -1 O LYS H 198 N THR H 179 SHEET 3 AA3 4 ASP H 249 ILE H 254 -1 O LEU H 252 N ILE H 195 SHEET 4 AA3 4 PHE H 241 SER H 246 -1 N THR H 242 O LYS H 253 SHEET 1 AA4 6 THR H 184 VAL H 187 0 SHEET 2 AA4 6 THR H 281 LEU H 285 1 O ASP H 284 N VAL H 187 SHEET 3 AA4 6 GLY H 263 GLN H 269 -1 N GLY H 263 O LEU H 283 SHEET 4 AA4 6 LEU H 212 GLN H 217 -1 N THR H 213 O LEU H 268 SHEET 5 AA4 6 PRO H 223 TYR H 228 -1 O LEU H 226 N TRP H 214 SHEET 6 AA4 6 LYS H 232 LEU H 233 -1 O LYS H 232 N TYR H 228 SHEET 1 AA5 4 THR H 184 VAL H 187 0 SHEET 2 AA5 4 THR H 281 LEU H 285 1 O ASP H 284 N VAL H 187 SHEET 3 AA5 4 GLY H 263 GLN H 269 -1 N GLY H 263 O LEU H 283 SHEET 4 AA5 4 THR H 276 PHE H 277 -1 O THR H 276 N GLN H 269 SHEET 1 AA6 4 MET I 41 SER I 45 0 SHEET 2 AA6 4 LEU I 56 SER I 63 -1 O SER I 59 N SER I 45 SHEET 3 AA6 4 THR I 116 LEU I 121 -1 O LEU I 117 N CYS I 60 SHEET 4 AA6 4 THR I 107 ASP I 111 -1 N SER I 109 O TYR I 118 SHEET 1 AA7 6 GLY I 48 VAL I 50 0 SHEET 2 AA7 6 THR I 148 VAL I 152 1 O THR I 151 N VAL I 50 SHEET 3 AA7 6 ALA I 130 ALA I 135 -1 N ALA I 130 O VAL I 150 SHEET 4 AA7 6 MET I 72 GLN I 77 -1 N SER I 73 O ALA I 135 SHEET 5 AA7 6 LEU I 83 ILE I 89 -1 O GLU I 84 N ARG I 76 SHEET 6 AA7 6 THR I 96 TYR I 97 -1 O TYR I 97 N THR I 88 SHEET 1 AA8 4 MET I 178 THR I 181 0 SHEET 2 AA8 4 ALA I 193 SER I 199 -1 O LYS I 198 N THR I 179 SHEET 3 AA8 4 ASP I 249 ILE I 254 -1 O LEU I 252 N ILE I 195 SHEET 4 AA8 4 PHE I 241 SER I 246 -1 N SER I 244 O THR I 251 SHEET 1 AA9 6 THR I 184 VAL I 187 0 SHEET 2 AA9 6 THR I 281 LEU I 285 1 O LYS I 282 N LEU I 185 SHEET 3 AA9 6 VAL I 264 GLN I 269 -1 N TYR I 265 O THR I 281 SHEET 4 AA9 6 LEU I 212 GLN I 217 -1 N GLN I 217 O VAL I 264 SHEET 5 AA9 6 PRO I 223 TYR I 228 -1 O LEU I 226 N TRP I 214 SHEET 6 AA9 6 LYS I 232 LEU I 233 -1 O LYS I 232 N TYR I 228 SHEET 1 AB1 4 THR I 184 VAL I 187 0 SHEET 2 AB1 4 THR I 281 LEU I 285 1 O LYS I 282 N LEU I 185 SHEET 3 AB1 4 VAL I 264 GLN I 269 -1 N TYR I 265 O THR I 281 SHEET 4 AB1 4 THR I 276 PHE I 277 -1 O THR I 276 N GLN I 269 SSBOND 1 CYS A 156 CYS A 190 1555 1555 2.08 SSBOND 2 CYS A 157 CYS A 175 1555 1555 2.04 SSBOND 3 CYS B 156 CYS B 190 1555 1555 2.06 SSBOND 4 CYS B 157 CYS B 175 1555 1555 2.04 SSBOND 5 CYS H 60 CYS H 134 1555 1555 2.02 SSBOND 6 CYS H 197 CYS H 267 1555 1555 2.04 SSBOND 7 CYS I 60 CYS I 134 1555 1555 1.98 SSBOND 8 CYS I 197 CYS I 267 1555 1555 2.07 CISPEP 1 THR H 181 PRO H 182 0 1.35 CISPEP 2 PHE H 273 PRO H 274 0 -1.67 CISPEP 3 THR I 181 PRO I 182 0 -15.34 CISPEP 4 PHE I 273 PRO I 274 0 -2.56 CRYST1 73.351 100.502 116.666 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013633 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009950 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008571 0.00000