data_6EJS # _entry.id 6EJS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.305 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6EJS WWPDB D_1200006497 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'different condition' 6EJT unspecified PDB 'different condition' 6EJU unspecified PDB 'different condition' 6EJV unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6EJS _pdbx_database_status.recvd_initial_deposition_date 2017-09-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Stransky, J.' 1 0000-0001-5139-2567 'Dohnalek, J.' 2 ? 'Oestergaard, L.A.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structure of novel nuclease NucB from Bacillus licheniformis' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stransky, J.' 1 ? primary 'Dohnalek, J.' 2 ? primary 'Oestergaard, L.H.' 3 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6EJS _cell.details ? _cell.formula_units_Z ? _cell.length_a 32.534 _cell.length_a_esd ? _cell.length_b 47.414 _cell.length_b_esd ? _cell.length_c 56.262 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EJS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Nuclease 12001.333 1 ? ? ? 'putative EC 3.1.21.1' 2 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 3 water nat water 18.015 139 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AARYDDILYFPASRYPETGAHISDAIKAGHSDVCTIERSGADKRRQESLKGIPTKPGFDRDEWPMAMCEEGGKGASVRYV SSSDNRGAGSWVGNRLSGFADGTRILFIVQ ; _entity_poly.pdbx_seq_one_letter_code_can ;AARYDDILYFPASRYPETGAHISDAIKAGHSDVCTIERSGADKRRQESLKGIPTKPGFDRDEWPMAMCEEGGKGASVRYV SSSDNRGAGSWVGNRLSGFADGTRILFIVQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ALA n 1 3 ARG n 1 4 TYR n 1 5 ASP n 1 6 ASP n 1 7 ILE n 1 8 LEU n 1 9 TYR n 1 10 PHE n 1 11 PRO n 1 12 ALA n 1 13 SER n 1 14 ARG n 1 15 TYR n 1 16 PRO n 1 17 GLU n 1 18 THR n 1 19 GLY n 1 20 ALA n 1 21 HIS n 1 22 ILE n 1 23 SER n 1 24 ASP n 1 25 ALA n 1 26 ILE n 1 27 LYS n 1 28 ALA n 1 29 GLY n 1 30 HIS n 1 31 SER n 1 32 ASP n 1 33 VAL n 1 34 CYS n 1 35 THR n 1 36 ILE n 1 37 GLU n 1 38 ARG n 1 39 SER n 1 40 GLY n 1 41 ALA n 1 42 ASP n 1 43 LYS n 1 44 ARG n 1 45 ARG n 1 46 GLN n 1 47 GLU n 1 48 SER n 1 49 LEU n 1 50 LYS n 1 51 GLY n 1 52 ILE n 1 53 PRO n 1 54 THR n 1 55 LYS n 1 56 PRO n 1 57 GLY n 1 58 PHE n 1 59 ASP n 1 60 ARG n 1 61 ASP n 1 62 GLU n 1 63 TRP n 1 64 PRO n 1 65 MET n 1 66 ALA n 1 67 MET n 1 68 CYS n 1 69 GLU n 1 70 GLU n 1 71 GLY n 1 72 GLY n 1 73 LYS n 1 74 GLY n 1 75 ALA n 1 76 SER n 1 77 VAL n 1 78 ARG n 1 79 TYR n 1 80 VAL n 1 81 SER n 1 82 SER n 1 83 SER n 1 84 ASP n 1 85 ASN n 1 86 ARG n 1 87 GLY n 1 88 ALA n 1 89 GLY n 1 90 SER n 1 91 TRP n 1 92 VAL n 1 93 GLY n 1 94 ASN n 1 95 ARG n 1 96 LEU n 1 97 SER n 1 98 GLY n 1 99 PHE n 1 100 ALA n 1 101 ASP n 1 102 GLY n 1 103 THR n 1 104 ARG n 1 105 ILE n 1 106 LEU n 1 107 PHE n 1 108 ILE n 1 109 VAL n 1 110 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 110 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'nucB, BL00126' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus licheniformis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1402 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 1423 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q65J43_BACLD _struct_ref.pdbx_db_accession Q65J43 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AARYDDILYFPASRYPETGAHISDAIKAGHSDVCTIERSGADKRRQESLKGIPTKPGFDRDEWPMAMCEEGGKGASVRYV SSSDNRGAGSWVGNRLSGFADGTRILFIVQ ; _struct_ref.pdbx_align_begin 33 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6EJS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 110 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q65J43 _struct_ref_seq.db_align_beg 33 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 142 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 33 _struct_ref_seq.pdbx_auth_seq_align_end 142 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6EJS _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.8 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 32.0 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ;SAD phase problem was solved with the data collected at 1.9 A wavelength, while the presented structure is refined against the 0.9184 A dataset ; _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '2.2 M ammonium sulphate, 0.1 M Tris pH 8.5' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-11-15 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator '2 MIRROR AND DOUBLE-CRYSTAL MONOCHROMATOR' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.9 1.0 2 0.9184 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'BESSY BEAMLINE 14.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.9,0.9184 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 14.2 _diffrn_source.pdbx_synchrotron_site BESSY # _reflns.B_iso_Wilson_estimate 13 _reflns.entry_id 6EJS _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.6 _reflns.d_resolution_low 47.41 _reflns.details ;SAD phase problem was solved with the data collected at 1.9 A wavelength, while the presented structure is refined against the 0.9184 A dataset ; _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10804 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.percent_possible_obs 90.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.7 _reflns.pdbx_Rmerge_I_obs 0.037 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 29.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.043 _reflns.pdbx_Rpim_I_all 0.022 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.6 _reflns_shell.d_res_low 1.63 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 448 _reflns_shell.percent_possible_all 77.7 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.116 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.142 _reflns_shell.pdbx_Rpim_I_all 0.079 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -0.6100 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][2] 0.7800 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -0.1700 _refine.B_iso_max 52.610 _refine.B_iso_mean 17.7017 _refine.B_iso_min 8.500 _refine.correlation_coeff_Fo_to_Fc 0.9530 _refine.correlation_coeff_Fo_to_Fc_free 0.9610 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6EJS _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.6000 _refine.ls_d_res_low 36.2800 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10766 _refine.ls_number_reflns_R_free 492 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 89.6800 _refine.ls_percent_reflns_R_free 4.6000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1921 _refine.ls_R_factor_R_free 0.24 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.188 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'CCP4 geometric library, version 4.11' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.1380 _refine.pdbx_overall_ESU_R_Free 0.1040 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 838 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 139 _refine_hist.number_atoms_total 992 _refine_hist.d_res_high 1.6000 _refine_hist.d_res_low 36.2800 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.016 0.019 957 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.000 0.020 855 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.778 1.968 1302 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 3.782 3.000 1979 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 5.786 5.000 126 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 34.778 21.064 47 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 14.653 15.000 160 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 17.777 15.000 15 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.108 0.200 130 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.010 0.020 1106 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.013 0.020 229 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 1.337 1.498 468 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 1.304 1.492 467 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 1.947 2.236 594 ? r_mcangle_it ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.6000 _refine_ls_shell.d_res_low 1.6420 _refine_ls_shell.number_reflns_all 694 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 33 _refine_ls_shell.number_reflns_R_work 661 _refine_ls_shell.percent_reflns_obs 78.5100 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2050 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.1930 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6EJS _struct.title 'Nuclease NucB from Bacillus licheniformis in P212121 space group' _struct.pdbx_descriptor Nuclease _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6EJS _struct_keywords.text 'nuclease, DNAse, metal dependent, hydrolase' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 TYR A 15 ? GLY A 29 ? TYR A 47 GLY A 61 1 ? 15 HELX_P HELX_P2 AA2 GLY A 40 ? LEU A 49 ? GLY A 72 LEU A 81 1 ? 10 HELX_P HELX_P3 AA3 SER A 82 ? ARG A 86 ? SER A 114 ARG A 118 1 ? 5 HELX_P HELX_P4 AA4 GLY A 87 ? LEU A 96 ? GLY A 119 LEU A 128 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 34 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 68 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 66 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 100 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.069 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TRP _struct_mon_prot_cis.label_seq_id 63 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TRP _struct_mon_prot_cis.auth_seq_id 95 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 64 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 96 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.79 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASP A 6 ? PHE A 10 ? ASP A 38 PHE A 42 AA1 2 ARG A 104 ? VAL A 109 ? ARG A 136 VAL A 141 AA1 3 VAL A 33 ? THR A 35 ? VAL A 65 THR A 67 AA2 1 PHE A 58 ? TRP A 63 ? PHE A 90 TRP A 95 AA2 2 SER A 76 ? SER A 81 ? SER A 108 SER A 113 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 8 ? N LEU A 40 O LEU A 106 ? O LEU A 138 AA1 2 3 O ILE A 105 ? O ILE A 137 N CYS A 34 ? N CYS A 66 AA2 1 2 N TRP A 63 ? N TRP A 95 O SER A 76 ? O SER A 108 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 201 ? 7 'binding site for residue SO4 A 201' AC2 Software A SO4 202 ? 9 'binding site for residue SO4 A 202' AC3 Software A SO4 203 ? 12 'binding site for residue SO4 A 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ARG A 86 ? ARG A 118 . ? 1_555 ? 2 AC1 7 GLY A 87 ? GLY A 119 . ? 1_555 ? 3 AC1 7 ALA A 88 ? ALA A 120 . ? 1_555 ? 4 AC1 7 GLY A 89 ? GLY A 121 . ? 1_555 ? 5 AC1 7 SER A 90 ? SER A 122 . ? 1_555 ? 6 AC1 7 HOH E . ? HOH A 301 . ? 1_555 ? 7 AC1 7 HOH E . ? HOH A 315 . ? 1_455 ? 8 AC2 9 ALA A 2 ? ALA A 34 . ? 1_455 ? 9 AC2 9 ARG A 3 ? ARG A 35 . ? 1_455 ? 10 AC2 9 TYR A 4 ? TYR A 36 . ? 1_455 ? 11 AC2 9 ARG A 45 ? ARG A 77 . ? 1_555 ? 12 AC2 9 ASP A 59 ? ASP A 91 . ? 1_555 ? 13 AC2 9 ARG A 60 ? ARG A 92 . ? 1_555 ? 14 AC2 9 HOH E . ? HOH A 306 . ? 1_555 ? 15 AC2 9 HOH E . ? HOH A 310 . ? 1_555 ? 16 AC2 9 HOH E . ? HOH A 353 . ? 1_555 ? 17 AC3 12 ARG A 3 ? ARG A 35 . ? 3_645 ? 18 AC3 12 ARG A 14 ? ARG A 46 . ? 1_555 ? 19 AC3 12 ARG A 45 ? ARG A 77 . ? 3_545 ? 20 AC3 12 TRP A 91 ? TRP A 123 . ? 1_555 ? 21 AC3 12 ARG A 95 ? ARG A 127 . ? 1_555 ? 22 AC3 12 ARG A 104 ? ARG A 136 . ? 3_645 ? 23 AC3 12 HOH E . ? HOH A 305 . ? 1_555 ? 24 AC3 12 HOH E . ? HOH A 322 . ? 1_555 ? 25 AC3 12 HOH E . ? HOH A 342 . ? 3_645 ? 26 AC3 12 HOH E . ? HOH A 368 . ? 1_555 ? 27 AC3 12 HOH E . ? HOH A 388 . ? 3_545 ? 28 AC3 12 HOH E . ? HOH A 391 . ? 1_555 ? # _atom_sites.entry_id 6EJS _atom_sites.fract_transf_matrix[1][1] 0.030737 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021091 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017774 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 33 ? ? ? A . n A 1 2 ALA 2 34 34 ALA ALA A . n A 1 3 ARG 3 35 35 ARG ARG A . n A 1 4 TYR 4 36 36 TYR TYR A . n A 1 5 ASP 5 37 37 ASP ASP A . n A 1 6 ASP 6 38 38 ASP ASP A . n A 1 7 ILE 7 39 39 ILE ILE A . n A 1 8 LEU 8 40 40 LEU LEU A . n A 1 9 TYR 9 41 41 TYR TYR A . n A 1 10 PHE 10 42 42 PHE PHE A . n A 1 11 PRO 11 43 43 PRO PRO A . n A 1 12 ALA 12 44 44 ALA ALA A . n A 1 13 SER 13 45 45 SER SER A . n A 1 14 ARG 14 46 46 ARG ARG A . n A 1 15 TYR 15 47 47 TYR TYR A . n A 1 16 PRO 16 48 48 PRO PRO A . n A 1 17 GLU 17 49 49 GLU GLU A . n A 1 18 THR 18 50 50 THR THR A . n A 1 19 GLY 19 51 51 GLY GLY A . n A 1 20 ALA 20 52 52 ALA ALA A . n A 1 21 HIS 21 53 53 HIS HIS A . n A 1 22 ILE 22 54 54 ILE ILE A . n A 1 23 SER 23 55 55 SER SER A . n A 1 24 ASP 24 56 56 ASP ASP A . n A 1 25 ALA 25 57 57 ALA ALA A . n A 1 26 ILE 26 58 58 ILE ILE A . n A 1 27 LYS 27 59 59 LYS LYS A . n A 1 28 ALA 28 60 60 ALA ALA A . n A 1 29 GLY 29 61 61 GLY GLY A . n A 1 30 HIS 30 62 62 HIS HIS A . n A 1 31 SER 31 63 63 SER SER A . n A 1 32 ASP 32 64 64 ASP ASP A . n A 1 33 VAL 33 65 65 VAL VAL A . n A 1 34 CYS 34 66 66 CYS CYS A . n A 1 35 THR 35 67 67 THR THR A . n A 1 36 ILE 36 68 68 ILE ILE A . n A 1 37 GLU 37 69 69 GLU GLU A . n A 1 38 ARG 38 70 70 ARG ARG A . n A 1 39 SER 39 71 71 SER SER A . n A 1 40 GLY 40 72 72 GLY GLY A . n A 1 41 ALA 41 73 73 ALA ALA A . n A 1 42 ASP 42 74 74 ASP ASP A . n A 1 43 LYS 43 75 75 LYS LYS A . n A 1 44 ARG 44 76 76 ARG ARG A . n A 1 45 ARG 45 77 77 ARG ARG A . n A 1 46 GLN 46 78 78 GLN GLN A . n A 1 47 GLU 47 79 79 GLU GLU A . n A 1 48 SER 48 80 80 SER SER A . n A 1 49 LEU 49 81 81 LEU LEU A . n A 1 50 LYS 50 82 82 LYS LYS A . n A 1 51 GLY 51 83 83 GLY GLY A . n A 1 52 ILE 52 84 84 ILE ILE A . n A 1 53 PRO 53 85 85 PRO PRO A . n A 1 54 THR 54 86 86 THR THR A . n A 1 55 LYS 55 87 87 LYS LYS A . n A 1 56 PRO 56 88 88 PRO PRO A . n A 1 57 GLY 57 89 89 GLY GLY A . n A 1 58 PHE 58 90 90 PHE PHE A . n A 1 59 ASP 59 91 91 ASP ASP A . n A 1 60 ARG 60 92 92 ARG ARG A . n A 1 61 ASP 61 93 93 ASP ASP A . n A 1 62 GLU 62 94 94 GLU GLU A . n A 1 63 TRP 63 95 95 TRP TRP A . n A 1 64 PRO 64 96 96 PRO PRO A . n A 1 65 MET 65 97 97 MET MET A . n A 1 66 ALA 66 98 98 ALA ALA A . n A 1 67 MET 67 99 99 MET MET A . n A 1 68 CYS 68 100 100 CYS CYS A . n A 1 69 GLU 69 101 101 GLU GLU A . n A 1 70 GLU 70 102 102 GLU GLU A . n A 1 71 GLY 71 103 103 GLY GLY A . n A 1 72 GLY 72 104 104 GLY GLY A . n A 1 73 LYS 73 105 105 LYS LYS A . n A 1 74 GLY 74 106 106 GLY GLY A . n A 1 75 ALA 75 107 107 ALA ALA A . n A 1 76 SER 76 108 108 SER SER A . n A 1 77 VAL 77 109 109 VAL VAL A . n A 1 78 ARG 78 110 110 ARG ARG A . n A 1 79 TYR 79 111 111 TYR TYR A . n A 1 80 VAL 80 112 112 VAL VAL A . n A 1 81 SER 81 113 113 SER SER A . n A 1 82 SER 82 114 114 SER SER A . n A 1 83 SER 83 115 115 SER SER A . n A 1 84 ASP 84 116 116 ASP ASP A . n A 1 85 ASN 85 117 117 ASN ASN A . n A 1 86 ARG 86 118 118 ARG ARG A . n A 1 87 GLY 87 119 119 GLY GLY A . n A 1 88 ALA 88 120 120 ALA ALA A . n A 1 89 GLY 89 121 121 GLY GLY A . n A 1 90 SER 90 122 122 SER SER A . n A 1 91 TRP 91 123 123 TRP TRP A . n A 1 92 VAL 92 124 124 VAL VAL A . n A 1 93 GLY 93 125 125 GLY GLY A . n A 1 94 ASN 94 126 126 ASN ASN A . n A 1 95 ARG 95 127 127 ARG ARG A . n A 1 96 LEU 96 128 128 LEU LEU A . n A 1 97 SER 97 129 129 SER SER A . n A 1 98 GLY 98 130 130 GLY GLY A . n A 1 99 PHE 99 131 131 PHE PHE A . n A 1 100 ALA 100 132 132 ALA ALA A . n A 1 101 ASP 101 133 133 ASP ASP A . n A 1 102 GLY 102 134 134 GLY GLY A . n A 1 103 THR 103 135 135 THR THR A . n A 1 104 ARG 104 136 136 ARG ARG A . n A 1 105 ILE 105 137 137 ILE ILE A . n A 1 106 LEU 106 138 138 LEU LEU A . n A 1 107 PHE 107 139 139 PHE PHE A . n A 1 108 ILE 108 140 140 ILE ILE A . n A 1 109 VAL 109 141 141 VAL VAL A . n A 1 110 GLN 110 142 142 GLN GLN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 201 2 SO4 SO4 A . C 2 SO4 1 202 3 SO4 SO4 A . D 2 SO4 1 203 4 SO4 SO4 A . E 3 HOH 1 301 189 HOH HOH A . E 3 HOH 2 302 102 HOH HOH A . E 3 HOH 3 303 5 HOH HOH A . E 3 HOH 4 304 201 HOH HOH A . E 3 HOH 5 305 164 HOH HOH A . E 3 HOH 6 306 176 HOH HOH A . E 3 HOH 7 307 45 HOH HOH A . E 3 HOH 8 308 120 HOH HOH A . E 3 HOH 9 309 115 HOH HOH A . E 3 HOH 10 310 130 HOH HOH A . E 3 HOH 11 311 32 HOH HOH A . E 3 HOH 12 312 69 HOH HOH A . E 3 HOH 13 313 26 HOH HOH A . E 3 HOH 14 314 40 HOH HOH A . E 3 HOH 15 315 105 HOH HOH A . E 3 HOH 16 316 87 HOH HOH A . E 3 HOH 17 317 36 HOH HOH A . E 3 HOH 18 318 136 HOH HOH A . E 3 HOH 19 319 192 HOH HOH A . E 3 HOH 20 320 19 HOH HOH A . E 3 HOH 21 321 85 HOH HOH A . E 3 HOH 22 322 21 HOH HOH A . E 3 HOH 23 323 103 HOH HOH A . E 3 HOH 24 324 55 HOH HOH A . E 3 HOH 25 325 95 HOH HOH A . E 3 HOH 26 326 13 HOH HOH A . E 3 HOH 27 327 33 HOH HOH A . E 3 HOH 28 328 7 HOH HOH A . E 3 HOH 29 329 12 HOH HOH A . E 3 HOH 30 330 191 HOH HOH A . E 3 HOH 31 331 127 HOH HOH A . E 3 HOH 32 332 159 HOH HOH A . E 3 HOH 33 333 30 HOH HOH A . E 3 HOH 34 334 70 HOH HOH A . E 3 HOH 35 335 10 HOH HOH A . E 3 HOH 36 336 24 HOH HOH A . E 3 HOH 37 337 65 HOH HOH A . E 3 HOH 38 338 74 HOH HOH A . E 3 HOH 39 339 39 HOH HOH A . E 3 HOH 40 340 76 HOH HOH A . E 3 HOH 41 341 17 HOH HOH A . E 3 HOH 42 342 187 HOH HOH A . E 3 HOH 43 343 124 HOH HOH A . E 3 HOH 44 344 89 HOH HOH A . E 3 HOH 45 345 137 HOH HOH A . E 3 HOH 46 346 142 HOH HOH A . E 3 HOH 47 347 73 HOH HOH A . E 3 HOH 48 348 34 HOH HOH A . E 3 HOH 49 349 25 HOH HOH A . E 3 HOH 50 350 27 HOH HOH A . E 3 HOH 51 351 117 HOH HOH A . E 3 HOH 52 352 139 HOH HOH A . E 3 HOH 53 353 6 HOH HOH A . E 3 HOH 54 354 79 HOH HOH A . E 3 HOH 55 355 15 HOH HOH A . E 3 HOH 56 356 100 HOH HOH A . E 3 HOH 57 357 106 HOH HOH A . E 3 HOH 58 358 194 HOH HOH A . E 3 HOH 59 359 62 HOH HOH A . E 3 HOH 60 360 20 HOH HOH A . E 3 HOH 61 361 49 HOH HOH A . E 3 HOH 62 362 129 HOH HOH A . E 3 HOH 63 363 35 HOH HOH A . E 3 HOH 64 364 52 HOH HOH A . E 3 HOH 65 365 59 HOH HOH A . E 3 HOH 66 366 47 HOH HOH A . E 3 HOH 67 367 28 HOH HOH A . E 3 HOH 68 368 63 HOH HOH A . E 3 HOH 69 369 200 HOH HOH A . E 3 HOH 70 370 1 HOH HOH A . E 3 HOH 71 371 178 HOH HOH A . E 3 HOH 72 372 54 HOH HOH A . E 3 HOH 73 373 4 HOH HOH A . E 3 HOH 74 374 2 HOH HOH A . E 3 HOH 75 375 183 HOH HOH A . E 3 HOH 76 376 38 HOH HOH A . E 3 HOH 77 377 9 HOH HOH A . E 3 HOH 78 378 185 HOH HOH A . E 3 HOH 79 379 147 HOH HOH A . E 3 HOH 80 380 11 HOH HOH A . E 3 HOH 81 381 157 HOH HOH A . E 3 HOH 82 382 22 HOH HOH A . E 3 HOH 83 383 128 HOH HOH A . E 3 HOH 84 384 29 HOH HOH A . E 3 HOH 85 385 18 HOH HOH A . E 3 HOH 86 386 101 HOH HOH A . E 3 HOH 87 387 42 HOH HOH A . E 3 HOH 88 388 90 HOH HOH A . E 3 HOH 89 389 58 HOH HOH A . E 3 HOH 90 390 174 HOH HOH A . E 3 HOH 91 391 132 HOH HOH A . E 3 HOH 92 392 67 HOH HOH A . E 3 HOH 93 393 82 HOH HOH A . E 3 HOH 94 394 171 HOH HOH A . E 3 HOH 95 395 94 HOH HOH A . E 3 HOH 96 396 66 HOH HOH A . E 3 HOH 97 397 8 HOH HOH A . E 3 HOH 98 398 57 HOH HOH A . E 3 HOH 99 399 77 HOH HOH A . E 3 HOH 100 400 14 HOH HOH A . E 3 HOH 101 401 60 HOH HOH A . E 3 HOH 102 402 64 HOH HOH A . E 3 HOH 103 403 16 HOH HOH A . E 3 HOH 104 404 108 HOH HOH A . E 3 HOH 105 405 43 HOH HOH A . E 3 HOH 106 406 186 HOH HOH A . E 3 HOH 107 407 121 HOH HOH A . E 3 HOH 108 408 202 HOH HOH A . E 3 HOH 109 409 92 HOH HOH A . E 3 HOH 110 410 114 HOH HOH A . E 3 HOH 111 411 71 HOH HOH A . E 3 HOH 112 412 86 HOH HOH A . E 3 HOH 113 413 80 HOH HOH A . E 3 HOH 114 414 166 HOH HOH A . E 3 HOH 115 415 141 HOH HOH A . E 3 HOH 116 416 119 HOH HOH A . E 3 HOH 117 417 133 HOH HOH A . E 3 HOH 118 418 126 HOH HOH A . E 3 HOH 119 419 149 HOH HOH A . E 3 HOH 120 420 198 HOH HOH A . E 3 HOH 121 421 199 HOH HOH A . E 3 HOH 122 422 37 HOH HOH A . E 3 HOH 123 423 122 HOH HOH A . E 3 HOH 124 424 140 HOH HOH A . E 3 HOH 125 425 91 HOH HOH A . E 3 HOH 126 426 143 HOH HOH A . E 3 HOH 127 427 180 HOH HOH A . E 3 HOH 128 428 113 HOH HOH A . E 3 HOH 129 429 98 HOH HOH A . E 3 HOH 130 430 81 HOH HOH A . E 3 HOH 131 431 116 HOH HOH A . E 3 HOH 132 432 23 HOH HOH A . E 3 HOH 133 433 169 HOH HOH A . E 3 HOH 134 434 31 HOH HOH A . E 3 HOH 135 435 170 HOH HOH A . E 3 HOH 136 436 197 HOH HOH A . E 3 HOH 137 437 152 HOH HOH A . E 3 HOH 138 438 173 HOH HOH A . E 3 HOH 139 439 175 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 480 ? 1 MORE -32 ? 1 'SSA (A^2)' 6110 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2019-04-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0158 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.10 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXDE ? ? ? . 5 ? 'data processing' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 6 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? BUCCANEER ? ? ? . 7 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NH2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ARG _pdbx_validate_close_contact.auth_seq_id_1 92 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O4 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 SO4 _pdbx_validate_close_contact.auth_seq_id_2 202 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 B _pdbx_validate_close_contact.dist 2.13 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id ALA _pdbx_unobs_or_zero_occ_residues.auth_seq_id 33 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id ALA _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'European Regional Development Fund' 'Czech Republic' CZ.1.05/1.1.00/02.0109 1 'Ministry of Education (Czech Republic)' 'Czech Republic' LM2015043 2 'European Regional Development Fund' 'Czech Republic' CZ.02.1.01/0.0/0.0/16_013/0001776 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'light scattering' _pdbx_struct_assembly_auth_evidence.details 'The enzyme forms dimer in solution' #