data_6EKB # _entry.id 6EKB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6EKB WWPDB D_1200006742 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6EKB _pdbx_database_status.recvd_initial_deposition_date 2017-09-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Aigner, H.' 1 ? 'Wilson, R.H.' 2 ? 'Bracher, A.' 3 0000-0001-8530-7594 'Calisse, L.' 4 ? 'Bhat, J.Y.' 5 ? 'Hartl, F.U.' 6 ? 'Hayer-Hartl, M.' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Science _citation.journal_id_ASTM SCIEAS _citation.journal_id_CSD 0038 _citation.journal_id_ISSN 1095-9203 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 358 _citation.language ? _citation.page_first 1272 _citation.page_last 1278 _citation.title 'Plant RuBisCo assembly in E. coli with five chloroplast chaperones including BSD2.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/science.aap9221 _citation.pdbx_database_id_PubMed 29217567 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Aigner, H.' 1 primary 'Wilson, R.H.' 2 primary 'Bracher, A.' 3 primary 'Calisse, L.' 4 primary 'Bhat, J.Y.' 5 primary 'Hartl, F.U.' 6 primary 'Hayer-Hartl, M.' 7 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6EKB _cell.details ? _cell.formula_units_Z ? _cell.length_a 55.708 _cell.length_a_esd ? _cell.length_b 55.708 _cell.length_b_esd ? _cell.length_c 48.131 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EKB _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DnaJ/Hsp40 cysteine-rich domain superfamily protein' 8355.468 1 ? K56M ? ? 2 non-polymer syn 'ZINC ION' 65.409 3 ? ? ? ? 3 water nat water 18.015 29 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Uncharacterized protein At3g47650,Uncharacterized protein F1P2.200' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAANNNPQGTKPNSLVCANCEGEGCVACSQCKGGGVNLIDHFNGQFKAGALCWLCRGKKEVLCGDCNGAGFIGGFLSTFD E ; _entity_poly.pdbx_seq_one_letter_code_can ;MAANNNPQGTKPNSLVCANCEGEGCVACSQCKGGGVNLIDHFNGQFKAGALCWLCRGKKEVLCGDCNGAGFIGGFLSTFD E ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 ALA n 1 4 ASN n 1 5 ASN n 1 6 ASN n 1 7 PRO n 1 8 GLN n 1 9 GLY n 1 10 THR n 1 11 LYS n 1 12 PRO n 1 13 ASN n 1 14 SER n 1 15 LEU n 1 16 VAL n 1 17 CYS n 1 18 ALA n 1 19 ASN n 1 20 CYS n 1 21 GLU n 1 22 GLY n 1 23 GLU n 1 24 GLY n 1 25 CYS n 1 26 VAL n 1 27 ALA n 1 28 CYS n 1 29 SER n 1 30 GLN n 1 31 CYS n 1 32 LYS n 1 33 GLY n 1 34 GLY n 1 35 GLY n 1 36 VAL n 1 37 ASN n 1 38 LEU n 1 39 ILE n 1 40 ASP n 1 41 HIS n 1 42 PHE n 1 43 ASN n 1 44 GLY n 1 45 GLN n 1 46 PHE n 1 47 LYS n 1 48 ALA n 1 49 GLY n 1 50 ALA n 1 51 LEU n 1 52 CYS n 1 53 TRP n 1 54 LEU n 1 55 CYS n 1 56 ARG n 1 57 GLY n 1 58 LYS n 1 59 LYS n 1 60 GLU n 1 61 VAL n 1 62 LEU n 1 63 CYS n 1 64 GLY n 1 65 ASP n 1 66 CYS n 1 67 ASN n 1 68 GLY n 1 69 ALA n 1 70 GLY n 1 71 PHE n 1 72 ILE n 1 73 GLY n 1 74 GLY n 1 75 PHE n 1 76 LEU n 1 77 SER n 1 78 THR n 1 79 PHE n 1 80 ASP n 1 81 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 81 _entity_src_gen.gene_src_common_name 'Mouse-ear cress' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'F1P2.200, At3g47650' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pHUE _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9SN73_ARATH _struct_ref.pdbx_db_accession Q9SN73 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AANNNPQGTKPNSLVCANCEGEGCVACSQCKGGGVNLIDHFNGQFKAGALCWLCRGKKEVLCGDCNGAGFIGGFLSTFDE ; _struct_ref.pdbx_align_begin 57 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6EKB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 81 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9SN73 _struct_ref_seq.db_align_beg 57 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 136 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 57 _struct_ref_seq.pdbx_auth_seq_align_end 136 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 6EKB _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9SN73 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'initiating methionine' _struct_ref_seq_dif.pdbx_auth_seq_num 56 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6EKB _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.97 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 58.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '20 % PEG 10,000, 8 % ethylene glycol and 0.1 M HEPES-NaOH pH 7.5' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-02-19 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.2826 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.2826 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6EKB _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.91 _reflns.d_resolution_low 47.850 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6226 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.700 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 48.600 _reflns.pdbx_Rmerge_I_obs 0.138 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 24.700 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.140 _reflns.pdbx_Rpim_I_all 0.020 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.910 1.950 ? ? ? ? ? ? 379 95.000 ? ? ? ? 4.852 ? ? ? ? ? ? ? ? 47.400 ? ? ? ? 4.904 0.699 ? 1 1 0.742 ? 8.950 47.850 ? ? ? ? ? ? 88 99.800 ? ? ? ? 0.046 ? ? ? ? ? ? ? ? 37.600 ? ? ? ? 0.046 0.007 ? 2 1 1.000 ? # _refine.aniso_B[1][1] -0.4400 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][2] -0.4400 _refine.aniso_B[2][3] -0.0000 _refine.aniso_B[3][3] 0.8700 _refine.B_iso_max 107.810 _refine.B_iso_mean 46.1770 _refine.B_iso_min 28.590 _refine.correlation_coeff_Fo_to_Fc 0.9640 _refine.correlation_coeff_Fo_to_Fc_free 0.9440 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6EKB _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.9000 _refine.ls_d_res_low 30.0000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5503 _refine.ls_number_reflns_R_free 277 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 91.1000 _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1901 _refine.ls_R_factor_R_free 0.2158 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1888 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free 0.1962 _refine.ls_wR_factor_R_work 0.1763 _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.1340 _refine.pdbx_overall_ESU_R_Free 0.1250 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 7.8110 _refine.overall_SU_ML 0.1110 _refine.overall_SU_R_Cruickshank_DPI 0.1343 _refine.overall_SU_R_free 0.1250 _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set 0.7757 _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.9000 _refine_hist.d_res_low 30.0000 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 29 _refine_hist.number_atoms_total 464 _refine_hist.pdbx_number_residues_total 62 _refine_hist.pdbx_B_iso_mean_ligand 48.76 _refine_hist.pdbx_B_iso_mean_solvent 46.41 _refine_hist.pdbx_number_atoms_protein 432 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.017 0.019 437 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 405 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.814 1.934 583 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.051 3.000 933 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.199 5.000 61 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 44.975 26.111 18 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 11.530 15.000 70 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 0.113 15.000 1 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.112 0.200 60 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 0.020 531 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 104 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.9020 _refine_ls_shell.d_res_low 1.9510 _refine_ls_shell.number_reflns_all 334 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 20 _refine_ls_shell.number_reflns_R_work 314 _refine_ls_shell.percent_reflns_obs 73.5700 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.4590 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.3920 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6EKB _struct.title 'Crystal structure of the BSD2 homolog of Arabidopsis thaliana' _struct.pdbx_descriptor 'DnaJ/Hsp40 cysteine-rich domain superfamily protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6EKB _struct_keywords.text 'zinc finger, assembly chaperone, Rubisco, CHAPERONE' _struct_keywords.pdbx_keywords CHAPERONE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A CYS 17 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 72 A ZN 201 1_555 ? ? ? ? ? ? ? 2.526 ? metalc2 metalc ? ? A CYS 20 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 75 A ZN 201 1_555 ? ? ? ? ? ? ? 2.415 ? metalc3 metalc ? ? A GLU 23 OE1 ? ? ? 1_555 D ZN . ZN ? ? A GLU 78 A ZN 203 1_555 ? ? ? ? ? ? ? 2.142 ? metalc4 metalc ? ? A CYS 25 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 80 A ZN 203 1_555 ? ? ? ? ? ? ? 2.325 ? metalc5 metalc ? ? A CYS 28 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 83 A ZN 202 1_555 ? ? ? ? ? ? ? 2.340 ? metalc6 metalc ? ? A CYS 31 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 86 A ZN 202 1_555 ? ? ? ? ? ? ? 2.290 ? metalc7 metalc ? ? A CYS 52 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 107 A ZN 202 1_555 ? ? ? ? ? ? ? 2.439 ? metalc8 metalc ? ? A CYS 55 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 110 A ZN 202 1_555 ? ? ? ? ? ? ? 2.362 ? metalc9 metalc ? ? A GLU 60 OE2 ? ? ? 1_555 D ZN . ZN ? ? A GLU 115 A ZN 203 1_555 ? ? ? ? ? ? ? 2.104 ? metalc10 metalc ? ? A CYS 63 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 118 A ZN 201 1_555 ? ? ? ? ? ? ? 2.427 ? metalc11 metalc ? ? A CYS 66 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 121 A ZN 201 1_555 ? ? ? ? ? ? ? 2.381 ? metalc12 metalc ? ? A HIS 41 ND1 ? ? ? 1_555 D ZN . ZN ? ? A HIS 96 A ZN 203 4_454 ? ? ? ? ? ? ? 2.235 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 15 ? VAL A 16 ? LEU A 70 VAL A 71 AA1 2 PHE A 71 ? ILE A 72 ? PHE A 126 ILE A 127 AA2 1 CYS A 25 ? ALA A 27 ? CYS A 80 ALA A 82 AA2 2 GLU A 60 ? LEU A 62 ? GLU A 115 LEU A 117 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 15 ? N LEU A 70 O ILE A 72 ? O ILE A 127 AA2 1 2 N VAL A 26 ? N VAL A 81 O VAL A 61 ? O VAL A 116 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 201 ? 4 'binding site for residue ZN A 201' AC2 Software A ZN 202 ? 4 'binding site for residue ZN A 202' AC3 Software A ZN 203 ? 4 'binding site for residue ZN A 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 17 ? CYS A 72 . ? 1_555 ? 2 AC1 4 CYS A 20 ? CYS A 75 . ? 1_555 ? 3 AC1 4 CYS A 63 ? CYS A 118 . ? 1_555 ? 4 AC1 4 CYS A 66 ? CYS A 121 . ? 1_555 ? 5 AC2 4 CYS A 28 ? CYS A 83 . ? 1_555 ? 6 AC2 4 CYS A 31 ? CYS A 86 . ? 1_555 ? 7 AC2 4 CYS A 52 ? CYS A 107 . ? 1_555 ? 8 AC2 4 CYS A 55 ? CYS A 110 . ? 1_555 ? 9 AC3 4 GLU A 23 ? GLU A 78 . ? 1_555 ? 10 AC3 4 CYS A 25 ? CYS A 80 . ? 1_555 ? 11 AC3 4 HIS A 41 ? HIS A 96 . ? 3_555 ? 12 AC3 4 GLU A 60 ? GLU A 115 . ? 1_555 ? # _atom_sites.entry_id 6EKB _atom_sites.fract_transf_matrix[1][1] 0.017951 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017951 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020777 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 56 ? ? ? A . n A 1 2 ALA 2 57 ? ? ? A . n A 1 3 ALA 3 58 ? ? ? A . n A 1 4 ASN 4 59 ? ? ? A . n A 1 5 ASN 5 60 ? ? ? A . n A 1 6 ASN 6 61 ? ? ? A . n A 1 7 PRO 7 62 ? ? ? A . n A 1 8 GLN 8 63 ? ? ? A . n A 1 9 GLY 9 64 ? ? ? A . n A 1 10 THR 10 65 ? ? ? A . n A 1 11 LYS 11 66 ? ? ? A . n A 1 12 PRO 12 67 ? ? ? A . n A 1 13 ASN 13 68 68 ASN ASN A . n A 1 14 SER 14 69 69 SER SER A . n A 1 15 LEU 15 70 70 LEU LEU A . n A 1 16 VAL 16 71 71 VAL VAL A . n A 1 17 CYS 17 72 72 CYS CYS A . n A 1 18 ALA 18 73 73 ALA ALA A . n A 1 19 ASN 19 74 74 ASN ASN A . n A 1 20 CYS 20 75 75 CYS CYS A . n A 1 21 GLU 21 76 76 GLU GLU A . n A 1 22 GLY 22 77 77 GLY GLY A . n A 1 23 GLU 23 78 78 GLU GLU A . n A 1 24 GLY 24 79 79 GLY GLY A . n A 1 25 CYS 25 80 80 CYS CYS A . n A 1 26 VAL 26 81 81 VAL VAL A . n A 1 27 ALA 27 82 82 ALA ALA A . n A 1 28 CYS 28 83 83 CYS CYS A . n A 1 29 SER 29 84 84 SER SER A . n A 1 30 GLN 30 85 85 GLN GLN A . n A 1 31 CYS 31 86 86 CYS CYS A . n A 1 32 LYS 32 87 87 LYS LYS A . n A 1 33 GLY 33 88 88 GLY GLY A . n A 1 34 GLY 34 89 89 GLY GLY A . n A 1 35 GLY 35 90 90 GLY GLY A . n A 1 36 VAL 36 91 91 VAL VAL A . n A 1 37 ASN 37 92 92 ASN ASN A . n A 1 38 LEU 38 93 93 LEU LEU A . n A 1 39 ILE 39 94 94 ILE ILE A . n A 1 40 ASP 40 95 95 ASP ASP A . n A 1 41 HIS 41 96 96 HIS HIS A . n A 1 42 PHE 42 97 97 PHE PHE A . n A 1 43 ASN 43 98 98 ASN ASN A . n A 1 44 GLY 44 99 99 GLY GLY A . n A 1 45 GLN 45 100 100 GLN GLN A . n A 1 46 PHE 46 101 101 PHE PHE A . n A 1 47 LYS 47 102 102 LYS LYS A . n A 1 48 ALA 48 103 103 ALA ALA A . n A 1 49 GLY 49 104 104 GLY GLY A . n A 1 50 ALA 50 105 105 ALA ALA A . n A 1 51 LEU 51 106 106 LEU LEU A . n A 1 52 CYS 52 107 107 CYS CYS A . n A 1 53 TRP 53 108 108 TRP TRP A . n A 1 54 LEU 54 109 109 LEU LEU A . n A 1 55 CYS 55 110 110 CYS CYS A . n A 1 56 ARG 56 111 111 ARG ARG A . n A 1 57 GLY 57 112 112 GLY GLY A . n A 1 58 LYS 58 113 113 LYS LYS A . n A 1 59 LYS 59 114 114 LYS LYS A . n A 1 60 GLU 60 115 115 GLU GLU A . n A 1 61 VAL 61 116 116 VAL VAL A . n A 1 62 LEU 62 117 117 LEU LEU A . n A 1 63 CYS 63 118 118 CYS CYS A . n A 1 64 GLY 64 119 119 GLY GLY A . n A 1 65 ASP 65 120 120 ASP ASP A . n A 1 66 CYS 66 121 121 CYS CYS A . n A 1 67 ASN 67 122 122 ASN ASN A . n A 1 68 GLY 68 123 123 GLY GLY A . n A 1 69 ALA 69 124 124 ALA ALA A . n A 1 70 GLY 70 125 125 GLY GLY A . n A 1 71 PHE 71 126 126 PHE PHE A . n A 1 72 ILE 72 127 127 ILE ILE A . n A 1 73 GLY 73 128 128 GLY GLY A . n A 1 74 GLY 74 129 129 GLY GLY A . n A 1 75 PHE 75 130 ? ? ? A . n A 1 76 LEU 76 131 ? ? ? A . n A 1 77 SER 77 132 ? ? ? A . n A 1 78 THR 78 133 ? ? ? A . n A 1 79 PHE 79 134 ? ? ? A . n A 1 80 ASP 80 135 ? ? ? A . n A 1 81 GLU 81 136 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 201 1 ZN ZN A . C 2 ZN 1 202 2 ZN ZN A . D 2 ZN 1 203 3 ZN ZN A . E 3 HOH 1 301 8 HOH HOH A . E 3 HOH 2 302 18 HOH HOH A . E 3 HOH 3 303 9 HOH HOH A . E 3 HOH 4 304 14 HOH HOH A . E 3 HOH 5 305 6 HOH HOH A . E 3 HOH 6 306 19 HOH HOH A . E 3 HOH 7 307 10 HOH HOH A . E 3 HOH 8 308 1 HOH HOH A . E 3 HOH 9 309 13 HOH HOH A . E 3 HOH 10 310 12 HOH HOH A . E 3 HOH 11 311 17 HOH HOH A . E 3 HOH 12 312 26 HOH HOH A . E 3 HOH 13 313 4 HOH HOH A . E 3 HOH 14 314 7 HOH HOH A . E 3 HOH 15 315 22 HOH HOH A . E 3 HOH 16 316 16 HOH HOH A . E 3 HOH 17 317 3 HOH HOH A . E 3 HOH 18 318 15 HOH HOH A . E 3 HOH 19 319 2 HOH HOH A . E 3 HOH 20 320 30 HOH HOH A . E 3 HOH 21 321 5 HOH HOH A . E 3 HOH 22 322 25 HOH HOH A . E 3 HOH 23 323 28 HOH HOH A . E 3 HOH 24 324 27 HOH HOH A . E 3 HOH 25 325 24 HOH HOH A . E 3 HOH 26 326 29 HOH HOH A . E 3 HOH 27 327 31 HOH HOH A . E 3 HOH 28 328 23 HOH HOH A . E 3 HOH 29 329 21 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 70 ? 1 MORE -24 ? 1 'SSA (A^2)' 4330 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 315 ? E HOH . 2 1 A HOH 325 ? E HOH . 3 1 A HOH 329 ? E HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 17 ? A CYS 72 ? 1_555 ZN ? B ZN . ? A ZN 201 ? 1_555 SG ? A CYS 20 ? A CYS 75 ? 1_555 108.4 ? 2 SG ? A CYS 17 ? A CYS 72 ? 1_555 ZN ? B ZN . ? A ZN 201 ? 1_555 SG ? A CYS 63 ? A CYS 118 ? 1_555 111.7 ? 3 SG ? A CYS 20 ? A CYS 75 ? 1_555 ZN ? B ZN . ? A ZN 201 ? 1_555 SG ? A CYS 63 ? A CYS 118 ? 1_555 113.2 ? 4 SG ? A CYS 17 ? A CYS 72 ? 1_555 ZN ? B ZN . ? A ZN 201 ? 1_555 SG ? A CYS 66 ? A CYS 121 ? 1_555 111.9 ? 5 SG ? A CYS 20 ? A CYS 75 ? 1_555 ZN ? B ZN . ? A ZN 201 ? 1_555 SG ? A CYS 66 ? A CYS 121 ? 1_555 105.9 ? 6 SG ? A CYS 63 ? A CYS 118 ? 1_555 ZN ? B ZN . ? A ZN 201 ? 1_555 SG ? A CYS 66 ? A CYS 121 ? 1_555 105.7 ? 7 OE1 ? A GLU 23 ? A GLU 78 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 SG ? A CYS 25 ? A CYS 80 ? 1_555 124.9 ? 8 OE1 ? A GLU 23 ? A GLU 78 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 OE2 ? A GLU 60 ? A GLU 115 ? 1_555 90.3 ? 9 SG ? A CYS 25 ? A CYS 80 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 OE2 ? A GLU 60 ? A GLU 115 ? 1_555 117.1 ? 10 OE1 ? A GLU 23 ? A GLU 78 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 ND1 ? A HIS 41 ? A HIS 96 ? 1_555 82.9 ? 11 SG ? A CYS 25 ? A CYS 80 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 ND1 ? A HIS 41 ? A HIS 96 ? 1_555 97.0 ? 12 OE2 ? A GLU 60 ? A GLU 115 ? 1_555 ZN ? D ZN . ? A ZN 203 ? 1_555 ND1 ? A HIS 41 ? A HIS 96 ? 1_555 31.2 ? 13 SG ? A CYS 28 ? A CYS 83 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 SG ? A CYS 31 ? A CYS 86 ? 1_555 108.0 ? 14 SG ? A CYS 28 ? A CYS 83 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 SG ? A CYS 52 ? A CYS 107 ? 1_555 107.0 ? 15 SG ? A CYS 31 ? A CYS 86 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 SG ? A CYS 52 ? A CYS 107 ? 1_555 114.8 ? 16 SG ? A CYS 28 ? A CYS 83 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 SG ? A CYS 55 ? A CYS 110 ? 1_555 114.9 ? 17 SG ? A CYS 31 ? A CYS 86 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 SG ? A CYS 55 ? A CYS 110 ? 1_555 103.7 ? 18 SG ? A CYS 52 ? A CYS 107 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 SG ? A CYS 55 ? A CYS 110 ? 1_555 108.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-12-06 2 'Structure model' 1 1 2017-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_DOI' 5 2 'Structure model' '_citation.pdbx_database_id_PubMed' 6 2 'Structure model' '_citation.title' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 8.4639 _pdbx_refine_tls.origin_y 22.4250 _pdbx_refine_tls.origin_z 1.0937 _pdbx_refine_tls.T[1][1] 0.0589 _pdbx_refine_tls.T[2][2] 0.0754 _pdbx_refine_tls.T[3][3] 0.0444 _pdbx_refine_tls.T[1][2] 0.0216 _pdbx_refine_tls.T[1][3] 0.0143 _pdbx_refine_tls.T[2][3] 0.0241 _pdbx_refine_tls.L[1][1] 2.9729 _pdbx_refine_tls.L[2][2] 6.7050 _pdbx_refine_tls.L[3][3] 0.9311 _pdbx_refine_tls.L[1][2] 3.1240 _pdbx_refine_tls.L[1][3] 1.2653 _pdbx_refine_tls.L[2][3] 1.9861 _pdbx_refine_tls.S[1][1] -0.2147 _pdbx_refine_tls.S[2][2] 0.2182 _pdbx_refine_tls.S[3][3] -0.0035 _pdbx_refine_tls.S[1][2] 0.1699 _pdbx_refine_tls.S[1][3] 0.1353 _pdbx_refine_tls.S[2][3] 0.1753 _pdbx_refine_tls.S[2][1] -0.4466 _pdbx_refine_tls.S[3][1] -0.2204 _pdbx_refine_tls.S[3][2] -0.0414 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 68 A 129 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 2 1 B 1 B 2 ? ? ? ? ? ? # _phasing.method MAD # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.28 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXDE ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0155 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 SER _pdbx_validate_rmsd_bond.auth_seq_id_1 84 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 SER _pdbx_validate_rmsd_bond.auth_seq_id_2 84 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.504 _pdbx_validate_rmsd_bond.bond_target_value 1.418 _pdbx_validate_rmsd_bond.bond_deviation 0.086 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.013 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 56 ? A MET 1 2 1 Y 1 A ALA 57 ? A ALA 2 3 1 Y 1 A ALA 58 ? A ALA 3 4 1 Y 1 A ASN 59 ? A ASN 4 5 1 Y 1 A ASN 60 ? A ASN 5 6 1 Y 1 A ASN 61 ? A ASN 6 7 1 Y 1 A PRO 62 ? A PRO 7 8 1 Y 1 A GLN 63 ? A GLN 8 9 1 Y 1 A GLY 64 ? A GLY 9 10 1 Y 1 A THR 65 ? A THR 10 11 1 Y 1 A LYS 66 ? A LYS 11 12 1 Y 1 A PRO 67 ? A PRO 12 13 1 Y 1 A PHE 130 ? A PHE 75 14 1 Y 1 A LEU 131 ? A LEU 76 15 1 Y 1 A SER 132 ? A SER 77 16 1 Y 1 A THR 133 ? A THR 78 17 1 Y 1 A PHE 134 ? A PHE 79 18 1 Y 1 A ASP 135 ? A ASP 80 19 1 Y 1 A GLU 136 ? A GLU 81 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #