HEADER IMMUNE SYSTEM 28-SEP-17 6ELC TITLE CRYSTAL STRUCTURE OF O-LINKED GLYCOSYLATED VSG3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VARIANT SURFACE GLYCOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VSG3 MITAT1.3 VSG224 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 5702 KEYWDS TRYPANOSOME, VSG, SLEEPING SICKNESS, ANTIGEN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.E.STEBBINS REVDAT 5 30-MAR-22 6ELC 1 HETSYN LINK REVDAT 4 29-JUL-20 6ELC 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 29-AUG-18 6ELC 1 JRNL REVDAT 2 18-JUL-18 6ELC 1 JRNL REVDAT 1 11-JUL-18 6ELC 0 JRNL AUTH J.PINGER,D.NESIC,L.ALI,F.ARESTA-BRANCO,M.LILIC,S.CHOWDHURY, JRNL AUTH 2 H.S.KIM,J.VERDI,J.RAPER,M.A.J.FERGUSON,F.N.PAPAVASILIOU, JRNL AUTH 3 C.E.STEBBINS JRNL TITL AFRICAN TRYPANOSOMES EVADE IMMUNE CLEARANCE BY JRNL TITL 2 O-GLYCOSYLATION OF THE VSG SURFACE COAT. JRNL REF NAT MICROBIOL V. 3 932 2018 JRNL REFN ESSN 2058-5276 JRNL PMID 29988048 JRNL DOI 10.1038/S41564-018-0187-6 REMARK 2 REMARK 2 RESOLUTION. 1.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 91.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 64954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3462 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3859 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 215 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2652 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 475 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.036 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2762 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2613 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3761 ; 1.758 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6026 ; 1.051 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 354 ; 5.247 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;34.753 ;25.877 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 445 ;12.627 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.268 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 448 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3148 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 586 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1422 ; 2.553 ; 1.931 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1421 ; 2.553 ; 1.929 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1774 ; 3.157 ; 2.905 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1775 ; 3.156 ; 2.906 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1340 ; 3.717 ; 2.407 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1340 ; 3.717 ; 2.407 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1988 ; 4.332 ; 3.457 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3706 ; 4.604 ;18.696 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3454 ; 4.280 ;17.689 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5373 ; 2.917 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 117 ;30.247 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5684 ;11.402 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6ELC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006790. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9194 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JUNE 17, 2015 REMARK 200 DATA SCALING SOFTWARE : XDS JUNE 17, 2015 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68683 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.410 REMARK 200 RESOLUTION RANGE LOW (A) : 91.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 19.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROPS FORMED FROM MIXING A 1:1 REMARK 280 VOLUME RATIO OF THE PROTEIN WITH AN EQUILIBRATION BUFFER REMARK 280 CONSISTING OF 16-22% POLYETHYLENE GLYCOL (PEG) MOLECULAR WEIGHT REMARK 280 3350 DA, 200-325MM NACL, AND 100MM TRIS PH 8.2 REMARK 280 (TRIS(HYDROXYMETHYL)AMINOMETHANE), PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 64.92700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.92700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.92700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.92700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 64.92700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.92700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 64.92700 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 64.92700 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 64.92700 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 64.92700 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 64.92700 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 64.92700 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 64.92700 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 64.92700 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 64.92700 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 64.92700 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 64.92700 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 64.92700 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 64.92700 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 64.92700 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 64.92700 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 64.92700 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 64.92700 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 64.92700 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 64.92700 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 64.92700 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 64.92700 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 64.92700 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 64.92700 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 64.92700 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 64.92700 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 64.92700 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 64.92700 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 64.92700 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 64.92700 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 64.92700 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1053 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1116 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1137 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1145 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1162 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1170 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1171 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1175 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 VAL A 10 REMARK 465 LEU A 11 REMARK 465 ARG A 12 REMARK 465 ALA A 13 REMARK 465 ILE A 14 REMARK 465 THR A 15 REMARK 465 SER A 16 REMARK 465 ILE A 17 REMARK 465 GLU A 18 REMARK 465 ALA A 19 REMARK 465 ASN A 80 REMARK 465 LYS A 81 REMARK 465 ALA A 82 REMARK 465 ALA A 83 REMARK 465 ASP A 84 REMARK 465 SER A 85 REMARK 465 ASN A 86 REMARK 465 GLY A 87 REMARK 465 SER A 88 REMARK 465 PRO A 89 REMARK 465 LYS A 90 REMARK 465 VAL A 387 REMARK 465 GLY A 388 REMARK 465 ASP A 389 REMARK 465 SER A 390 REMARK 465 LYS A 391 REMARK 465 ALA A 392 REMARK 465 VAL A 393 REMARK 465 PRO A 394 REMARK 465 PRO A 395 REMARK 465 ALA A 396 REMARK 465 GLN A 397 REMARK 465 ARG A 398 REMARK 465 GLN A 399 REMARK 465 THR A 400 REMARK 465 GLN A 401 REMARK 465 ASN A 402 REMARK 465 LYS A 403 REMARK 465 PRO A 404 REMARK 465 GLY A 405 REMARK 465 SER A 406 REMARK 465 ASN A 407 REMARK 465 CYS A 408 REMARK 465 ASN A 409 REMARK 465 LYS A 410 REMARK 465 ASN A 411 REMARK 465 LEU A 412 REMARK 465 LYS A 413 REMARK 465 LYS A 414 REMARK 465 SER A 415 REMARK 465 GLU A 416 REMARK 465 CYS A 417 REMARK 465 LYS A 418 REMARK 465 ASP A 419 REMARK 465 SER A 420 REMARK 465 ASP A 421 REMARK 465 GLY A 422 REMARK 465 CYS A 423 REMARK 465 LYS A 424 REMARK 465 TRP A 425 REMARK 465 ASN A 426 REMARK 465 ARG A 427 REMARK 465 THR A 428 REMARK 465 GLU A 429 REMARK 465 GLU A 430 REMARK 465 THR A 431 REMARK 465 GLU A 432 REMARK 465 GLY A 433 REMARK 465 ASP A 434 REMARK 465 PHE A 435 REMARK 465 CYS A 436 REMARK 465 LYS A 437 REMARK 465 PRO A 438 REMARK 465 LYS A 439 REMARK 465 GLU A 440 REMARK 465 THR A 441 REMARK 465 GLY A 442 REMARK 465 THR A 443 REMARK 465 GLU A 444 REMARK 465 ASN A 445 REMARK 465 PRO A 446 REMARK 465 ALA A 447 REMARK 465 ALA A 448 REMARK 465 GLY A 449 REMARK 465 THR A 450 REMARK 465 GLY A 451 REMARK 465 GLU A 452 REMARK 465 GLY A 453 REMARK 465 ALA A 454 REMARK 465 ALA A 455 REMARK 465 GLY A 456 REMARK 465 ALA A 457 REMARK 465 ASN A 458 REMARK 465 THR A 459 REMARK 465 GLU A 460 REMARK 465 THR A 461 REMARK 465 LYS A 462 REMARK 465 LYS A 463 REMARK 465 CYS A 464 REMARK 465 SER A 465 REMARK 465 ASP A 466 REMARK 465 LYS A 467 REMARK 465 LYS A 468 REMARK 465 THR A 469 REMARK 465 GLU A 470 REMARK 465 GLY A 471 REMARK 465 ASP A 472 REMARK 465 CYS A 473 REMARK 465 LYS A 474 REMARK 465 ASP A 475 REMARK 465 GLY A 476 REMARK 465 CYS A 477 REMARK 465 LYS A 478 REMARK 465 TRP A 479 REMARK 465 ASP A 480 REMARK 465 GLY A 481 REMARK 465 LYS A 482 REMARK 465 GLU A 483 REMARK 465 CYS A 484 REMARK 465 LYS A 485 REMARK 465 ASP A 486 REMARK 465 SER A 487 REMARK 465 SER A 488 REMARK 465 ILE A 489 REMARK 465 LEU A 490 REMARK 465 ALA A 491 REMARK 465 THR A 492 REMARK 465 LYS A 493 REMARK 465 LYS A 494 REMARK 465 PHE A 495 REMARK 465 ALA A 496 REMARK 465 LEU A 497 REMARK 465 THR A 498 REMARK 465 VAL A 499 REMARK 465 VAL A 500 REMARK 465 SER A 501 REMARK 465 ALA A 502 REMARK 465 ALA A 503 REMARK 465 PHE A 504 REMARK 465 VAL A 505 REMARK 465 ALA A 506 REMARK 465 LEU A 507 REMARK 465 LEU A 508 REMARK 465 PHE A 509 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 152 CH2 TRP A 369 1.83 REMARK 500 OE1 GLN A 152 CZ2 TRP A 369 2.01 REMARK 500 O HOH A 864 O HOH A 1090 2.05 REMARK 500 C PHE A 79 O HOH A 803 2.08 REMARK 500 O HOH A 803 O HOH A 1074 2.08 REMARK 500 O HOH A 745 O HOH A 1089 2.10 REMARK 500 OE2 GLU A 137 NH1 ARG A 141 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 74 CD GLU A 74 OE1 -0.111 REMARK 500 TRP A 369 CB TRP A 369 CG -0.179 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 355 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 27 -5.89 73.91 REMARK 500 ASN A 203 175.58 73.09 REMARK 500 CYS A 212 43.18 -96.00 REMARK 500 ALA A 218 65.43 -114.84 REMARK 500 SER A 253 -135.33 -136.70 REMARK 500 THR A 312 -62.29 81.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1172 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1173 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1174 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1175 DISTANCE = 6.02 ANGSTROMS DBREF 6ELC A 1 509 UNP B3GVK1 B3GVK1_TRYBB 1 509 SEQRES 1 A 509 MET GLN ALA ALA ALA LEU LEU LEU LEU VAL LEU ARG ALA SEQRES 2 A 509 ILE THR SER ILE GLU ALA ALA ALA ASP ASP VAL ASN PRO SEQRES 3 A 509 ASP ASP ASN LYS GLU ASP PHE ALA VAL LEU CYS ALA LEU SEQRES 4 A 509 ALA ALA LEU ALA ASN LEU GLN THR THR VAL PRO SER ILE SEQRES 5 A 509 ASP THR SER GLY LEU ALA ALA TYR ASP ASN LEU GLN GLN SEQRES 6 A 509 LEU ASN LEU SER LEU SER SER LYS GLU TRP LYS SER LEU SEQRES 7 A 509 PHE ASN LYS ALA ALA ASP SER ASN GLY SER PRO LYS GLN SEQRES 8 A 509 PRO PRO GLU GLY PHE GLN SER ASP PRO THR TRP ARG LYS SEQRES 9 A 509 GLN TRP PRO ILE TRP VAL THR ALA ALA ALA ALA LEU LYS SEQRES 10 A 509 ALA GLU ASN LYS GLU ALA ALA VAL LEU ALA ARG ALA GLY SEQRES 11 A 509 LEU THR ASN ALA PRO GLU GLU LEU ARG ASN ARG ALA ARG SEQRES 12 A 509 LEU ALA LEU ILE PRO LEU LEU ALA GLN ALA GLU GLN ILE SEQRES 13 A 509 ARG ASP ARG LEU SER GLU ILE GLN LYS GLN ASN GLU ASP SEQRES 14 A 509 THR THR PRO THR ALA ILE ALA LYS ALA LEU ASN LYS ALA SEQRES 15 A 509 VAL TYR GLY GLN ASP LYS GLU THR GLY ALA VAL TYR ASN SEQRES 16 A 509 SER ALA ASP CYS PHE SER GLY ASN VAL ALA ASP SER THR SEQRES 17 A 509 GLN ASN SER CYS LYS ALA GLY ASN GLN ALA SER LYS ALA SEQRES 18 A 509 THR THR VAL ALA ALA THR ILE VAL CYS VAL CYS HIS LYS SEQRES 19 A 509 LYS ASN GLY GLY ASN ASP ALA ALA ASN ALA CYS GLY ARG SEQRES 20 A 509 LEU ILE ASN HIS GLN SER ASP ALA GLY ALA ASN LEU ALA SEQRES 21 A 509 THR ALA SER SER ASP PHE GLY ASP ILE ILE ALA THR CYS SEQRES 22 A 509 ALA ALA ARG PRO PRO LYS PRO LEU THR ALA ALA TYR LEU SEQRES 23 A 509 ASP SER ALA LEU ALA ALA VAL SER ALA ARG ILE ARG PHE SEQRES 24 A 509 LYS ASN GLY ASN GLY TYR LEU GLY LYS PHE LYS ALA THR SEQRES 25 A 509 GLY CYS THR GLY SER ALA SER GLU GLY LEU CYS VAL GLU SEQRES 26 A 509 TYR THR ALA LEU THR ALA ALA THR MET GLN ASN PHE TYR SEQRES 27 A 509 LYS ILE PRO TRP VAL LYS GLU ILE SER ASN VAL ALA GLU SEQRES 28 A 509 ALA LEU LYS ARG THR GLU LYS ASP ALA ALA GLU SER THR SEQRES 29 A 509 LEU LEU SER THR TRP LEU LYS ALA SER GLU ASN GLN GLY SEQRES 30 A 509 ASN SER VAL ALA GLN LYS LEU ILE LYS VAL GLY ASP SER SEQRES 31 A 509 LYS ALA VAL PRO PRO ALA GLN ARG GLN THR GLN ASN LYS SEQRES 32 A 509 PRO GLY SER ASN CYS ASN LYS ASN LEU LYS LYS SER GLU SEQRES 33 A 509 CYS LYS ASP SER ASP GLY CYS LYS TRP ASN ARG THR GLU SEQRES 34 A 509 GLU THR GLU GLY ASP PHE CYS LYS PRO LYS GLU THR GLY SEQRES 35 A 509 THR GLU ASN PRO ALA ALA GLY THR GLY GLU GLY ALA ALA SEQRES 36 A 509 GLY ALA ASN THR GLU THR LYS LYS CYS SER ASP LYS LYS SEQRES 37 A 509 THR GLU GLY ASP CYS LYS ASP GLY CYS LYS TRP ASP GLY SEQRES 38 A 509 LYS GLU CYS LYS ASP SER SER ILE LEU ALA THR LYS LYS SEQRES 39 A 509 PHE ALA LEU THR VAL VAL SER ALA ALA PHE VAL ALA LEU SEQRES 40 A 509 LEU PHE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET GLC A 605 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN C6 H12 O6 FORMUL 3 GLC C6 H12 O6 FORMUL 4 HOH *475(H2 O) HELIX 1 AA1 ASN A 29 ALA A 41 1 13 HELIX 2 AA2 THR A 54 LEU A 70 1 17 HELIX 3 AA3 SER A 72 LEU A 78 1 7 HELIX 4 AA4 ASP A 99 LYS A 117 1 19 HELIX 5 AA5 ASN A 120 ALA A 129 1 10 HELIX 6 AA6 PRO A 135 ASN A 167 1 33 HELIX 7 AA7 THR A 171 GLY A 185 1 15 HELIX 8 AA8 ASN A 195 PHE A 200 1 6 HELIX 9 AA9 SER A 207 CYS A 212 1 6 HELIX 10 AB1 THR A 223 HIS A 233 1 11 HELIX 11 AB2 THR A 261 ALA A 271 1 11 HELIX 12 AB3 THR A 282 ALA A 295 1 14 HELIX 13 AB4 THR A 330 LYS A 339 5 10 HELIX 14 AB5 ILE A 340 ASN A 378 1 39 HELIX 15 AB6 SER A 379 LYS A 386 1 8 SHEET 1 AA1 4 LYS A 213 ALA A 214 0 SHEET 2 AA1 4 VAL A 324 TYR A 326 1 O GLU A 325 N ALA A 214 SHEET 3 AA1 4 ASN A 303 LEU A 306 -1 N GLY A 304 O TYR A 326 SHEET 4 AA1 4 ARG A 298 LYS A 300 -1 N ARG A 298 O TYR A 305 SSBOND 1 CYS A 37 CYS A 273 1555 1555 2.08 SSBOND 2 CYS A 212 CYS A 230 1555 1555 2.07 SSBOND 3 CYS A 232 CYS A 245 1555 1555 2.05 SSBOND 4 CYS A 314 CYS A 323 1555 1555 2.06 LINK ND2 ASN A 67 C1 NAG B 1 1555 1555 1.42 LINK OG SER A 317 C1 GLC A 605 1555 1555 1.46 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.42 LINK O6 BMA B 3 C1 MAN B 4 1555 1555 1.43 CISPEP 1 LYS A 279 PRO A 280 0 -3.23 CRYST1 129.854 129.854 129.854 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007701 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007701 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007701 0.00000