HEADER IMMUNE SYSTEM 28-SEP-17 6ELE TITLE FAB FRAGMENT. ABVANCE: INCREASING OUR KNOWLEDGE OF ANTIBODY STRUCTURAL TITLE 2 SPACE TO ENABLE FASTER AND BETTER DECISION MAKING IN ANTIBODY DRUG TITLE 3 DISCOVERY CAVEAT 6ELE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB HEAVY CHAIN; COMPND 3 CHAIN: A, H; COMPND 4 SYNONYM: ABVANCE; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FAB LIGHT CHAIN; COMPND 8 CHAIN: B, L; COMPND 9 SYNONYM: ABVANCE; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS ANTIBODY, FAB FRAGMENT, ABVANCE PROJECT, PISTOIA ALLIANCE, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.BENZ,S.WEIGAND,S.DENGL,T.SCHLOTHAUER,J.AUER,A.EHLER,H.KETTENBERGER, AUTHOR 2 S.LORENZ,T.HIRSCHHEYDT,G.GEORGES REVDAT 3 01-MAY-24 6ELE 1 REMARK REVDAT 2 16-OCT-19 6ELE 1 REMARK REVDAT 1 08-NOV-17 6ELE 0 JRNL AUTH J.BENZ,G.GEORGES JRNL TITL ABVANCE: INCREASING OUR KNOWLEDGE OF ANTIBODY STRUCTURAL JRNL TITL 2 SPACE TO ENABLE FASTER AND BETTER DECISION MAKING IN JRNL TITL 3 ANTIBODY DRUG DISCOVERY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 90869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4553 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.83 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.46 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 6626 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2428 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6297 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE : 0.2754 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.97 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 329 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6552 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 398 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.04880 REMARK 3 B22 (A**2) : -1.58670 REMARK 3 B33 (A**2) : 0.53790 REMARK 3 B12 (A**2) : -2.67930 REMARK 3 B13 (A**2) : -1.46050 REMARK 3 B23 (A**2) : -2.58390 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.260 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.111 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.106 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.113 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.108 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6732 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9174 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2220 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 146 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 981 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6732 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 890 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7591 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.80 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.37 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 14.2907 18.2527 -12.7102 REMARK 3 T TENSOR REMARK 3 T11: -0.0547 T22: 0.0413 REMARK 3 T33: -0.0177 T12: 0.0333 REMARK 3 T13: 0.0155 T23: 0.0490 REMARK 3 L TENSOR REMARK 3 L11: 1.1249 L22: 0.5745 REMARK 3 L33: 0.7902 L12: 0.5841 REMARK 3 L13: 0.2058 L23: 0.0059 REMARK 3 S TENSOR REMARK 3 S11: -0.0150 S12: 0.1883 S13: 0.1530 REMARK 3 S21: -0.1026 S22: 0.0481 S23: 0.0736 REMARK 3 S31: 0.0235 S32: 0.0012 S33: -0.0331 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 28.5707 13.3468 -1.8426 REMARK 3 T TENSOR REMARK 3 T11: -0.0674 T22: -0.0175 REMARK 3 T33: -0.0731 T12: 0.0193 REMARK 3 T13: -0.0066 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 1.2379 L22: 0.5876 REMARK 3 L33: 0.4662 L12: -0.0160 REMARK 3 L13: -0.1069 L23: 0.0093 REMARK 3 S TENSOR REMARK 3 S11: 0.0085 S12: -0.0143 S13: -0.0555 REMARK 3 S21: -0.0317 S22: 0.0113 S23: -0.1090 REMARK 3 S31: 0.0198 S32: -0.0390 S33: -0.0198 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { H|* } REMARK 3 ORIGIN FOR THE GROUP (A): 44.0641 4.1359 30.1278 REMARK 3 T TENSOR REMARK 3 T11: -0.0785 T22: 0.0247 REMARK 3 T33: -0.0280 T12: -0.0433 REMARK 3 T13: -0.0463 T23: 0.0460 REMARK 3 L TENSOR REMARK 3 L11: 1.0489 L22: 1.3684 REMARK 3 L33: 0.7796 L12: -0.9812 REMARK 3 L13: -0.1429 L23: -0.1899 REMARK 3 S TENSOR REMARK 3 S11: -0.0752 S12: -0.1635 S13: 0.1344 REMARK 3 S21: 0.1003 S22: 0.0702 S23: -0.1580 REMARK 3 S31: 0.0093 S32: 0.0596 S33: 0.0050 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { L|* } REMARK 3 ORIGIN FOR THE GROUP (A): 30.1721 6.8683 17.5984 REMARK 3 T TENSOR REMARK 3 T11: -0.0971 T22: -0.0194 REMARK 3 T33: -0.0204 T12: -0.0223 REMARK 3 T13: -0.0103 T23: 0.0630 REMARK 3 L TENSOR REMARK 3 L11: 1.0431 L22: 1.0023 REMARK 3 L33: 1.0382 L12: -0.6282 REMARK 3 L13: -0.2233 L23: 0.0059 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: 0.0544 S13: 0.0713 REMARK 3 S21: 0.0241 S22: -0.0039 S23: 0.0455 REMARK 3 S31: -0.0039 S32: -0.0888 S33: 0.0068 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CODES LIKE KABAT NUMBERING WERE NOT REMARK 3 USED. IONS IN FAB NOT VISIBLE IN DENSITY AND NOT INCLUDED. REMARK 4 REMARK 4 6ELE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006798. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90969 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 45.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.360 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 8.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: IN HOUSE FAB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 9.0, 22.5 %W/V PEG 6K, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 102 REMARK 465 GLY A 103 REMARK 465 SER A 104 REMARK 465 ARG A 105 REMARK 465 TYR A 106 REMARK 465 HIS A 107 REMARK 465 TYR A 108 REMARK 465 SER A 139 REMARK 465 LYS A 140 REMARK 465 SER A 141 REMARK 465 THR A 142 REMARK 465 SER A 143 REMARK 465 GLY A 144 REMARK 465 LYS A 225 REMARK 465 SER A 226 REMARK 465 CYS A 227 REMARK 465 CYS B 214 REMARK 465 SER H 139 REMARK 465 LYS H 140 REMARK 465 SER H 141 REMARK 465 THR H 142 REMARK 465 SER H 143 REMARK 465 GLY H 144 REMARK 465 LYS H 225 REMARK 465 SER H 226 REMARK 465 CYS H 227 REMARK 465 GLY L 212 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 213 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 30 -111.45 52.73 REMARK 500 THR B 51 -50.95 74.49 REMARK 500 SER B 156 51.47 -108.66 REMARK 500 ASP H 155 66.87 60.99 REMARK 500 THR H 202 -39.85 -137.42 REMARK 500 ASN L 30 -113.16 53.45 REMARK 500 THR L 51 -51.23 73.18 REMARK 500 ALA L 84 172.79 179.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 301 DBREF 6ELE A 1 227 PDB 6ELE 6ELE 1 227 DBREF 6ELE B 1 214 PDB 6ELE 6ELE 1 214 DBREF 6ELE H 1 227 PDB 6ELE 6ELE 1 227 DBREF 6ELE L 1 214 PDB 6ELE 6ELE 1 214 SEQRES 1 A 227 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 227 PRO GLY GLY SER LEU ARG LEU SER CYS ALA THR SER GLY SEQRES 3 A 227 PHE ASP PHE SER ARG TYR TRP MET SER TRP VAL ARG GLN SEQRES 4 A 227 ALA PRO GLY LYS GLY LEU VAL TRP ILE GLY GLU VAL ASN SEQRES 5 A 227 PRO ASP SER THR SER ILE ASN TYR THR PRO SER LEU LYS SEQRES 6 A 227 ASP GLN PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 A 227 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 A 227 ALA VAL TYR TYR CYS THR ARG PRO ASN TYR TYR GLY SER SEQRES 9 A 227 ARG TYR HIS TYR TYR ALA MET ASP TYR TRP GLY GLN GLY SEQRES 10 A 227 THR LEU VAL THR VAL SER SER ALA SER THR LYS GLY PRO SEQRES 11 A 227 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 12 A 227 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 13 A 227 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 14 A 227 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 A 227 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 16 A 227 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 17 A 227 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG SEQRES 18 A 227 VAL GLU PRO LYS SER CYS SEQRES 1 B 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 B 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 B 214 GLN ASP ILE ASN ASN TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 B 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR TYR THR SER SEQRES 5 B 214 ARG LEU HIS SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 B 214 GLY SER GLY THR ASP PHE THR PHE THR ILE SER SER LEU SEQRES 7 B 214 GLN PRO GLU ASP ILE ALA THR TYR TYR CYS GLN GLN GLY SEQRES 8 B 214 SER THR LEU PRO PHE THR PHE GLY GLN GLY THR LYS LEU SEQRES 9 B 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 B 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 B 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 B 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 B 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 B 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 B 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 B 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 B 214 PHE ASN ARG GLY GLU CYS SEQRES 1 H 227 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 227 PRO GLY GLY SER LEU ARG LEU SER CYS ALA THR SER GLY SEQRES 3 H 227 PHE ASP PHE SER ARG TYR TRP MET SER TRP VAL ARG GLN SEQRES 4 H 227 ALA PRO GLY LYS GLY LEU VAL TRP ILE GLY GLU VAL ASN SEQRES 5 H 227 PRO ASP SER THR SER ILE ASN TYR THR PRO SER LEU LYS SEQRES 6 H 227 ASP GLN PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 H 227 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 227 ALA VAL TYR TYR CYS THR ARG PRO ASN TYR TYR GLY SER SEQRES 9 H 227 ARG TYR HIS TYR TYR ALA MET ASP TYR TRP GLY GLN GLY SEQRES 10 H 227 THR LEU VAL THR VAL SER SER ALA SER THR LYS GLY PRO SEQRES 11 H 227 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 12 H 227 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 13 H 227 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 14 H 227 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 H 227 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 16 H 227 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 17 H 227 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG SEQRES 18 H 227 VAL GLU PRO LYS SER CYS SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 214 GLN ASP ILE ASN ASN TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR TYR THR SER SEQRES 5 L 214 ARG LEU HIS SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR PHE THR ILE SER SER LEU SEQRES 7 L 214 GLN PRO GLU ASP ILE ALA THR TYR TYR CYS GLN GLN GLY SEQRES 8 L 214 SER THR LEU PRO PHE THR PHE GLY GLN GLY THR LYS LEU SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS HET EDO A 301 4 HET NA B 301 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO C2 H6 O2 FORMUL 6 NA NA 1+ FORMUL 7 HOH *398(H2 O) HELIX 1 AA1 ASP A 28 TYR A 32 5 5 HELIX 2 AA2 PRO A 62 LYS A 65 5 4 HELIX 3 AA3 ASN A 74 LYS A 76 5 3 HELIX 4 AA4 ARG A 87 THR A 91 5 5 HELIX 5 AA5 SER A 167 ALA A 169 5 3 HELIX 6 AA6 SER A 198 LEU A 200 5 3 HELIX 7 AA7 LYS A 212 ASN A 215 5 4 HELIX 8 AA8 GLN B 79 ILE B 83 5 5 HELIX 9 AA9 SER B 121 LYS B 126 1 6 HELIX 10 AB1 LYS B 183 GLU B 187 1 5 HELIX 11 AB2 ASP H 28 TYR H 32 5 5 HELIX 12 AB3 ARG H 87 THR H 91 5 5 HELIX 13 AB4 SER H 167 ALA H 169 5 3 HELIX 14 AB5 SER H 198 LEU H 200 5 3 HELIX 15 AB6 LYS H 212 ASN H 215 5 4 HELIX 16 AB7 GLN L 79 ILE L 83 5 5 HELIX 17 AB8 SER L 121 LYS L 126 1 6 HELIX 18 AB9 LYS L 183 LYS L 188 1 6 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O SER A 25 N GLN A 3 SHEET 3 AA1 4 THR A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 AA1 4 PHE A 68 ASP A 73 -1 N THR A 69 O GLN A 82 SHEET 1 AA2 6 LEU A 11 VAL A 12 0 SHEET 2 AA2 6 THR A 118 VAL A 122 1 O THR A 121 N VAL A 12 SHEET 3 AA2 6 ALA A 92 ASN A 100 -1 N ALA A 92 O VAL A 120 SHEET 4 AA2 6 MET A 34 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AA2 6 LEU A 45 VAL A 51 -1 O VAL A 46 N ARG A 38 SHEET 6 AA2 6 ILE A 58 TYR A 60 -1 O ASN A 59 N GLU A 50 SHEET 1 AA3 4 LEU A 11 VAL A 12 0 SHEET 2 AA3 4 THR A 118 VAL A 122 1 O THR A 121 N VAL A 12 SHEET 3 AA3 4 ALA A 92 ASN A 100 -1 N ALA A 92 O VAL A 120 SHEET 4 AA3 4 ALA A 110 TRP A 114 -1 O ALA A 110 N ASN A 100 SHEET 1 AA4 4 SER A 131 LEU A 135 0 SHEET 2 AA4 4 THR A 146 TYR A 156 -1 O LEU A 152 N PHE A 133 SHEET 3 AA4 4 TYR A 187 PRO A 196 -1 O TYR A 187 N TYR A 156 SHEET 4 AA4 4 VAL A 174 THR A 176 -1 N HIS A 175 O VAL A 192 SHEET 1 AA5 4 SER A 131 LEU A 135 0 SHEET 2 AA5 4 THR A 146 TYR A 156 -1 O LEU A 152 N PHE A 133 SHEET 3 AA5 4 TYR A 187 PRO A 196 -1 O TYR A 187 N TYR A 156 SHEET 4 AA5 4 VAL A 180 LEU A 181 -1 N VAL A 180 O SER A 188 SHEET 1 AA6 3 THR A 162 TRP A 165 0 SHEET 2 AA6 3 ILE A 206 HIS A 211 -1 O ASN A 208 N SER A 164 SHEET 3 AA6 3 THR A 216 ARG A 221 -1 O VAL A 218 N VAL A 209 SHEET 1 AA7 4 MET B 4 SER B 7 0 SHEET 2 AA7 4 VAL B 19 ALA B 25 -1 O THR B 22 N SER B 7 SHEET 3 AA7 4 ASP B 70 ILE B 75 -1 O PHE B 71 N CYS B 23 SHEET 4 AA7 4 PHE B 62 SER B 67 -1 N SER B 63 O THR B 74 SHEET 1 AA812 ARG B 53 LEU B 54 0 SHEET 2 AA812 LYS B 45 TYR B 49 -1 N TYR B 49 O ARG B 53 SHEET 3 AA812 LEU B 33 GLN B 38 -1 N TRP B 35 O LEU B 47 SHEET 4 AA812 ALA B 84 GLN B 90 -1 O TYR B 87 N TYR B 36 SHEET 5 AA812 THR B 102 LYS B 107 -1 O LEU B 104 N ALA B 84 SHEET 6 AA812 SER B 10 SER B 14 1 N LEU B 11 O GLU B 105 SHEET 7 AA812 SER L 10 ALA L 13 -1 O SER L 10 N SER B 12 SHEET 8 AA812 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 9 AA812 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 10 AA812 LEU L 33 GLN L 38 -1 N ASN L 34 O GLN L 89 SHEET 11 AA812 LYS L 45 TYR L 49 -1 O LYS L 45 N GLN L 37 SHEET 12 AA812 ARG L 53 LEU L 54 -1 O ARG L 53 N TYR L 49 SHEET 1 AA9 8 THR B 97 PHE B 98 0 SHEET 2 AA9 8 ALA B 84 GLN B 90 -1 N GLN B 90 O THR B 97 SHEET 3 AA9 8 THR B 102 LYS B 107 -1 O LEU B 104 N ALA B 84 SHEET 4 AA9 8 SER B 10 SER B 14 1 N LEU B 11 O GLU B 105 SHEET 5 AA9 8 SER L 10 ALA L 13 -1 O SER L 10 N SER B 12 SHEET 6 AA9 8 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 7 AA9 8 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 8 AA9 8 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 4 SER B 114 PHE B 118 0 SHEET 2 AB1 4 THR B 129 PHE B 139 -1 O ASN B 137 N SER B 114 SHEET 3 AB1 4 TYR B 173 SER B 182 -1 O TYR B 173 N PHE B 139 SHEET 4 AB1 4 ASN B 158 VAL B 163 -1 N ASN B 158 O THR B 180 SHEET 1 AB2 4 ALA B 153 LEU B 154 0 SHEET 2 AB2 4 LYS B 145 VAL B 150 -1 N VAL B 150 O ALA B 153 SHEET 3 AB2 4 VAL B 191 THR B 197 -1 O ALA B 193 N LYS B 149 SHEET 4 AB2 4 VAL B 205 ASN B 210 -1 O VAL B 205 N VAL B 196 SHEET 1 AB3 4 GLN H 3 SER H 7 0 SHEET 2 AB3 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AB3 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AB3 4 PHE H 68 ASP H 73 -1 N THR H 69 O GLN H 82 SHEET 1 AB4 6 GLY H 10 VAL H 12 0 SHEET 2 AB4 6 THR H 118 VAL H 122 1 O THR H 121 N VAL H 12 SHEET 3 AB4 6 ALA H 92 THR H 97 -1 N TYR H 94 O THR H 118 SHEET 4 AB4 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AB4 6 LEU H 45 VAL H 51 -1 O VAL H 46 N ARG H 38 SHEET 6 AB4 6 ILE H 58 TYR H 60 -1 O ASN H 59 N GLU H 50 SHEET 1 AB5 4 SER H 131 LEU H 135 0 SHEET 2 AB5 4 THR H 146 TYR H 156 -1 O LEU H 152 N PHE H 133 SHEET 3 AB5 4 TYR H 187 PRO H 196 -1 O VAL H 195 N ALA H 147 SHEET 4 AB5 4 VAL H 174 THR H 176 -1 N HIS H 175 O VAL H 192 SHEET 1 AB6 4 SER H 131 LEU H 135 0 SHEET 2 AB6 4 THR H 146 TYR H 156 -1 O LEU H 152 N PHE H 133 SHEET 3 AB6 4 TYR H 187 PRO H 196 -1 O VAL H 195 N ALA H 147 SHEET 4 AB6 4 VAL H 180 LEU H 181 -1 N VAL H 180 O SER H 188 SHEET 1 AB7 3 THR H 162 TRP H 165 0 SHEET 2 AB7 3 ILE H 206 HIS H 211 -1 O ASN H 208 N SER H 164 SHEET 3 AB7 3 THR H 216 ARG H 221 -1 O VAL H 218 N VAL H 209 SHEET 1 AB8 4 MET L 4 SER L 7 0 SHEET 2 AB8 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 AB8 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AB8 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AB9 4 SER L 114 PHE L 118 0 SHEET 2 AB9 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB9 4 TYR L 173 SER L 182 -1 O SER L 177 N CYS L 134 SHEET 4 AB9 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AC1 4 ALA L 153 LEU L 154 0 SHEET 2 AC1 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AC1 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AC1 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.06 SSBOND 2 CYS A 151 CYS A 207 1555 1555 2.03 SSBOND 3 CYS B 23 CYS B 88 1555 1555 2.09 SSBOND 4 CYS B 134 CYS B 194 1555 1555 2.05 SSBOND 5 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 6 CYS H 151 CYS H 207 1555 1555 2.04 SSBOND 7 CYS L 23 CYS L 88 1555 1555 2.09 SSBOND 8 CYS L 134 CYS L 194 1555 1555 2.05 LINK O LYS B 169 NA NA B 301 1555 1555 2.50 CISPEP 1 PHE A 157 PRO A 158 0 -7.55 CISPEP 2 GLU A 159 PRO A 160 0 4.76 CISPEP 3 SER B 7 PRO B 8 0 -5.97 CISPEP 4 LEU B 94 PRO B 95 0 -6.17 CISPEP 5 TYR B 140 PRO B 141 0 2.60 CISPEP 6 PHE H 157 PRO H 158 0 -6.37 CISPEP 7 GLU H 159 PRO H 160 0 4.38 CISPEP 8 SER L 7 PRO L 8 0 -5.64 CISPEP 9 LEU L 94 PRO L 95 0 -4.37 CISPEP 10 TYR L 140 PRO L 141 0 -0.69 SITE 1 AC1 8 LEU A 152 VAL A 180 SER A 188 LEU A 189 SITE 2 AC1 8 SER A 190 HOH A 431 THR B 178 HOH B 416 SITE 1 AC2 2 PRO B 80 LYS B 169 CRYST1 51.417 74.131 76.515 101.93 102.23 111.27 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019449 0.007571 0.006917 0.00000 SCALE2 0.000000 0.014476 0.004743 0.00000 SCALE3 0.000000 0.000000 0.014072 0.00000