HEADER OXIDOREDUCTASE 29-SEP-17 6ELH OBSLTE 14-MAR-18 6ELH 6FWF TITLE LOW RESOLUTION STRUCTURE OF NEISSERIA MENINGITIDIS QNOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRIC-OXIDE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: QUINOL-DEPENDENT NITRIC OXIDE REDUCTASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487; SOURCE 4 GENE: NORB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REDUCTASE, MEMBRANE-BOUND, NITRIC OXIDE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.YOUNG,S.ANTONYUK,T.TOSHA,T.HISANO,S.HASNAIN,Y.SHIRO REVDAT 2 14-MAR-18 6ELH 1 OBSLTE REVDAT 1 07-MAR-18 6ELH 0 JRNL AUTH N.GONSKA,D.YOUNG,R.YUKI,T.OKAMOTO,T.HISANO,S.ANTONYUK, JRNL AUTH 2 S.S.HASNAIN,K.MURAMOTO,Y.SHIRO,T.TOSHA,P.ADELROTH JRNL TITL CHARACTERIZATION OF THE QUINOL-DEPENDENT NITRIC OXIDE JRNL TITL 2 REDUCTASE FROM THE PATHOGEN NEISSERIA MENINGITIDIS, AN JRNL TITL 3 ELECTROGENIC ENZYME. JRNL REF SCI REP V. 8 3637 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 29483528 JRNL DOI 10.1038/S41598-018-21804-0 REMARK 2 REMARK 2 RESOLUTION. 4.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 89.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 8996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.327 REMARK 3 R VALUE (WORKING SET) : 0.325 REMARK 3 FREE R VALUE : 0.367 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 413 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 4.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 625 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.4410 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.5410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5961 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 87 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 323.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.62000 REMARK 3 B22 (A**2) : -11.11000 REMARK 3 B33 (A**2) : 0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 1.377 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 1.771 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 153.115 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.842 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.844 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6254 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5695 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8553 ; 1.189 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13099 ; 0.988 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 748 ; 5.762 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 265 ;34.172 ;23.132 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 935 ;13.638 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ; 9.832 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 915 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6984 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1471 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6ELH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006811. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9427 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.500 REMARK 200 RESOLUTION RANGE LOW (A) : 89.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 5.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 14.90 REMARK 200 R MERGE FOR SHELL (I) : 3.65300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3AYF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% (V/V) PEG 350 MONOMETHYL ETHER, 100 REMARK 280 MM MGCL2, 10 MM UREA, 10% GLYCEROL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 283.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 46.84100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.42250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.54800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.42250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.84100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.54800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 751 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 69 -42.60 -170.21 REMARK 500 GLN A 79 -61.71 -94.70 REMARK 500 GLN A 102 -77.28 -133.78 REMARK 500 LYS A 106 -63.39 -128.51 REMARK 500 ALA A 165 -77.71 -166.00 REMARK 500 MET A 175 -68.30 -143.81 REMARK 500 LEU A 180 -61.09 -156.28 REMARK 500 SER A 182 55.92 -144.87 REMARK 500 ASP A 206 -21.01 66.96 REMARK 500 ASN A 222 75.51 60.86 REMARK 500 LEU A 254 86.18 58.98 REMARK 500 THR A 264 70.59 65.18 REMARK 500 GLU A 265 34.88 -151.15 REMARK 500 SER A 269 75.19 -107.47 REMARK 500 GLN A 272 -155.12 -105.94 REMARK 500 PHE A 311 52.66 -156.75 REMARK 500 ASP A 315 43.00 -107.31 REMARK 500 PHE A 320 97.16 59.02 REMARK 500 GLU A 321 -68.00 -126.70 REMARK 500 PHE A 326 70.30 -116.76 REMARK 500 LYS A 362 95.18 -67.73 REMARK 500 PHE A 403 -49.55 65.32 REMARK 500 TYR A 412 -15.31 71.15 REMARK 500 VAL A 462 -55.86 -123.82 REMARK 500 TYR A 472 119.68 -168.16 REMARK 500 LEU A 491 -59.44 -121.67 REMARK 500 PHE A 496 -65.42 -148.90 REMARK 500 GLN A 581 37.30 -87.55 REMARK 500 LEU A 583 -48.32 -135.09 REMARK 500 GLU A 585 -119.65 -132.60 REMARK 500 GLN A 625 92.42 -49.52 REMARK 500 LEU A 638 -79.76 -78.59 REMARK 500 THR A 700 -77.81 -74.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 76 O REMARK 620 2 TYR A 78 OH 74.5 REMARK 620 3 GLU A 411 OE1 97.7 134.8 REMARK 620 4 GLU A 411 OE2 74.0 148.5 49.8 REMARK 620 5 HEM A 803 O1D 115.4 81.6 137.7 113.3 REMARK 620 6 HEM A 803 O2D 80.2 102.5 120.3 73.3 47.9 REMARK 620 7 HEM A 802 O2A 133.2 61.0 103.5 148.3 73.2 121.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 803 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 335 NE2 REMARK 620 2 HEM A 803 NA 101.6 REMARK 620 3 HEM A 803 NB 115.8 89.7 REMARK 620 4 HEM A 803 NC 78.1 178.5 89.1 REMARK 620 5 HEM A 803 ND 64.4 91.0 179.2 90.2 REMARK 620 6 HIS A 635 NE2 161.2 88.0 80.0 92.7 99.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 802 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 633 NE2 REMARK 620 2 HEM A 802 NA 73.5 REMARK 620 3 HEM A 802 NB 75.1 88.7 REMARK 620 4 HEM A 802 NC 107.2 178.4 90.0 REMARK 620 5 HEM A 802 ND 104.1 91.6 179.0 89.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 803 DBREF 6ELH A 1 751 UNP C6S880 C6S880_NEIML 1 751 SEQRES 1 A 751 MET GLY GLN TYR LYS LYS LEU TRP TYR LEU LEU PHE ALA SEQRES 2 A 751 VAL LEU ALA VAL CYS PHE THR ILE LEU GLY TYR MET GLY SEQRES 3 A 751 SER GLU VAL TYR LYS LYS ALA PRO PRO TYR PRO GLU GLN SEQRES 4 A 751 VAL VAL SER ALA SER GLY LYS VAL LEU MET ALA LYS ASP SEQRES 5 A 751 ASP ILE LEU ALA GLY GLN SER ALA TRP GLN THR THR GLY SEQRES 6 A 751 GLY MET GLU VAL GLY SER VAL LEU GLY HIS GLY ALA TYR SEQRES 7 A 751 GLN ALA PRO ASP TRP THR ALA ASP TRP LEU HIS ARG GLU SEQRES 8 A 751 LEU SER ALA TRP LEU ASP LEU THR ALA GLN GLN THR TYR SEQRES 9 A 751 GLY LYS LYS PHE ASP GLU VAL SER PRO GLU GLU GLN ALA SEQRES 10 A 751 VAL LEU LYS THR ARG LEU ALA ASP GLU TYR ARG ASN GLN SEQRES 11 A 751 SER ARG ILE LYS GLU ASP GLY SER VAL VAL ILE SER ASP SEQRES 12 A 751 THR ARG VAL LYS ALA ILE GLU SER ILE LEU PRO TYR TYR SEQRES 13 A 751 HIS GLY VAL TYR GLY ASP ASP PRO ALA LEU GLN THR THR SEQRES 14 A 751 ARG GLU HIS PHE ALA MET LYS ASN ASN THR LEU PRO SER SEQRES 15 A 751 GLN GLU ALA ARG GLU LYS LEU PHE ASP PHE PHE PHE TRP SEQRES 16 A 751 THR SER TRP SER ALA SER THR ASN ARG PRO ASP GLU THR SEQRES 17 A 751 PHE THR TYR THR ASN ASN TRP PRO HIS GLU PRO LEU ILE SEQRES 18 A 751 ASN ASN VAL PRO THR THR GLU ASN TYR MET TRP SER PHE SEQRES 19 A 751 THR SER VAL VAL LEU LEU LEU MET GLY ILE GLY LEU LEU SEQRES 20 A 751 MET TRP GLY TYR SER PHE LEU THR LYS HIS GLU GLU VAL SEQRES 21 A 751 GLU VAL PRO THR GLU ASP PRO ILE SER LYS VAL GLN LEU SEQRES 22 A 751 THR PRO SER GLN LYS ALA LEU GLY LYS TYR VAL PHE LEU SEQRES 23 A 751 THR VAL ALA LEU PHE VAL VAL GLN VAL LEU LEU GLY GLY SEQRES 24 A 751 LEU THR ALA HIS TYR THR VAL GLU GLY GLN GLY PHE TYR SEQRES 25 A 751 GLY ILE ASP GLU ALA LEU GLY PHE GLU MET SER ASP TRP SEQRES 26 A 751 PHE PRO TYR ALA LEU THR ARG THR TRP HIS ILE GLN SER SEQRES 27 A 751 ALA ILE PHE TRP ILE ALA THR GLY PHE LEU THR ALA GLY SEQRES 28 A 751 LEU PHE LEU ALA PRO ILE VAL ASN GLY GLY LYS ASP PRO SEQRES 29 A 751 LYS PHE GLN ARG ALA GLY VAL ASN PHE LEU TYR ILE ALA SEQRES 30 A 751 LEU PHE ILE VAL VAL GLY GLY SER TYR ALA GLY ASN PHE SEQRES 31 A 751 PHE ALA LEU THR HIS ILE LEU PRO PRO GLU PHE ASN PHE SEQRES 32 A 751 TRP PHE GLY HIS GLN GLY TYR GLU TYR LEU ASP LEU GLY SEQRES 33 A 751 ARG PHE TRP GLN LEU LEU LEU MET VAL GLY LEU LEU LEU SEQRES 34 A 751 TRP LEU PHE LEU MET LEU ARG CYS THR VAL SER ALA PHE SEQRES 35 A 751 LYS GLU LYS GLY VAL ASP LYS ASN LEU LEU ALA ILE PHE SEQRES 36 A 751 VAL ALA SER MET VAL GLY VAL GLY VAL PHE TYR ALA PRO SEQRES 37 A 751 GLY LEU PHE TYR GLY GLU LYS SER PRO ILE ALA VAL MET SEQRES 38 A 751 GLU TYR TRP ARG TRP TRP VAL VAL HIS LEU TRP VAL GLU SEQRES 39 A 751 GLY PHE PHE GLU VAL PHE ALA THR ALA ALA PHE ALA PHE SEQRES 40 A 751 VAL PHE TYR ASN MET GLY PHE VAL ARG ARG SER THR ALA SEQRES 41 A 751 THR ALA SER THR LEU ALA ALA ALA ALA ILE PHE MET LEU SEQRES 42 A 751 GLY GLY VAL PRO GLY THR LEU HIS HIS LEU TYR PHE SER SEQRES 43 A 751 GLY SER THR SER ALA SER MET ALA ILE GLY ALA CYS PHE SEQRES 44 A 751 SER ALA LEU GLU VAL VAL PRO LEU VAL LEU LEU GLY ARG SEQRES 45 A 751 GLU ALA TYR GLU HIS TRP SER TYR GLN HIS LEU SER GLU SEQRES 46 A 751 TRP ALA LYS ARG LEU ARG TRP PRO LEU MET CYS PHE VAL SEQRES 47 A 751 ALA VAL ALA PHE TRP ASN MET ILE GLY ALA GLY VAL PHE SEQRES 48 A 751 GLY PHE LEU ILE ASN PRO PRO ILE SER LEU PHE TYR ILE SEQRES 49 A 751 GLN GLY LEU ASN THR SER ALA VAL HIS ALA HIS ALA ALA SEQRES 50 A 751 LEU PHE GLY VAL TYR GLY PHE LEU ALA LEU GLY PHE VAL SEQRES 51 A 751 LEU LEU VAL ALA ARG TYR LEU LYS PRO ASN VAL GLN PHE SEQRES 52 A 751 ASP ASP LYS LEU MET THR TRP GLY PHE TRP LEU LEU ASN SEQRES 53 A 751 GLY GLY LEU VAL GLY MET ILE ALA ILE SER LEU LEU PRO SEQRES 54 A 751 VAL GLY VAL ILE GLN ALA TYR ALA SER ILE THR HIS GLY SEQRES 55 A 751 LEU TRP TYR ALA ARG SER GLU GLU PHE LEU GLN MET GLU SEQRES 56 A 751 ILE LEU ASP THR LEU ARG TRP VAL ARG THR ALA ALA ASP SEQRES 57 A 751 LEU ILE PHE ILE GLY GLY ALA ILE CYS VAL ALA ILE GLN SEQRES 58 A 751 ALA THR LYS ILE VAL PHE GLY ARG ASP LYS HET CA A 801 1 HET HEM A 802 43 HET HEM A 803 43 HETNAM CA CALCIUM ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 2 CA CA 2+ FORMUL 3 HEM 2(C34 H32 FE N4 O4) HELIX 1 AA1 TYR A 4 LYS A 32 1 29 HELIX 2 AA2 LYS A 51 GLY A 65 1 15 HELIX 3 AA3 GLY A 66 VAL A 69 5 4 HELIX 4 AA4 THR A 84 THR A 99 1 16 HELIX 5 AA5 SER A 112 ALA A 117 1 6 HELIX 6 AA6 LEU A 123 ARG A 128 1 6 HELIX 7 AA7 SER A 142 ILE A 152 1 11 HELIX 8 AA8 ILE A 152 GLY A 158 1 7 HELIX 9 AA9 ALA A 185 SER A 201 1 17 HELIX 10 AB1 GLU A 218 ASN A 222 5 5 HELIX 11 AB2 THR A 226 TYR A 251 1 26 HELIX 12 AB3 PRO A 275 LYS A 278 5 4 HELIX 13 AB4 ALA A 279 THR A 305 1 27 HELIX 14 AB5 GLU A 321 PHE A 326 1 6 HELIX 15 AB6 PRO A 327 ASN A 359 1 33 HELIX 16 AB7 PHE A 366 THR A 394 1 29 HELIX 17 AB8 GLY A 416 CYS A 437 1 22 HELIX 18 AB9 THR A 438 LYS A 445 1 8 HELIX 19 AC1 ASN A 450 MET A 459 1 10 HELIX 20 AC2 MET A 459 VAL A 464 1 6 HELIX 21 AC3 TYR A 466 PHE A 471 5 6 HELIX 22 AC4 PRO A 477 HIS A 490 1 14 HELIX 23 AC5 VAL A 493 GLU A 498 1 6 HELIX 24 AC6 VAL A 499 MET A 512 1 14 HELIX 25 AC7 ARG A 517 THR A 539 1 23 HELIX 26 AC8 LEU A 540 SER A 546 5 7 HELIX 27 AC9 THR A 549 GLU A 563 1 15 HELIX 28 AD1 GLU A 563 VAL A 568 1 6 HELIX 29 AD2 LEU A 569 SER A 579 1 11 HELIX 30 AD3 ARG A 591 GLY A 607 1 17 HELIX 31 AD4 PRO A 617 GLN A 625 1 9 HELIX 32 AD5 ASN A 628 PHE A 639 1 12 HELIX 33 AD6 VAL A 641 TYR A 656 1 16 HELIX 34 AD7 LYS A 666 ILE A 685 1 20 HELIX 35 AD8 SER A 686 THR A 700 1 15 HELIX 36 AD9 GLY A 702 SER A 708 1 7 HELIX 37 AE1 SER A 708 GLN A 713 1 6 HELIX 38 AE2 MET A 714 ILE A 745 1 32 HELIX 39 AE3 VAL A 746 GLY A 748 5 3 SHEET 1 AA1 2 GLN A 39 VAL A 41 0 SHEET 2 AA1 2 VAL A 47 ALA A 50 -1 O MET A 49 N VAL A 40 SHEET 1 AA2 2 ARG A 132 ILE A 133 0 SHEET 2 AA2 2 SER A 138 VAL A 139 -1 O SER A 138 N ILE A 133 LINK O GLY A 76 CA CA A 801 1555 1555 2.78 LINK OH TYR A 78 CA CA A 801 1555 1555 3.01 LINK NE2 HIS A 335 FE HEM A 803 1555 1555 2.77 LINK OE1 GLU A 411 CA CA A 801 1555 1555 2.71 LINK OE2 GLU A 411 CA CA A 801 1555 1555 2.63 LINK NE2 HIS A 633 FE HEM A 802 1555 1555 2.63 LINK NE2 HIS A 635 FE HEM A 803 1555 1555 2.46 LINK CA CA A 801 O1D HEM A 803 1555 1555 2.75 LINK CA CA A 801 O2D HEM A 803 1555 1555 2.75 LINK CA CA A 801 O2A HEM A 802 1555 1555 2.78 CISPEP 1 TRP A 215 PRO A 216 0 0.57 SITE 1 AC1 5 GLY A 76 TYR A 78 GLU A 411 HEM A 802 SITE 2 AC1 5 HEM A 803 SITE 1 AC2 19 TYR A 78 GLU A 411 TYR A 412 TRP A 486 SITE 2 AC2 19 HIS A 490 GLU A 494 HIS A 541 HIS A 542 SITE 3 AC2 19 SER A 560 GLU A 563 ALA A 608 GLY A 612 SITE 4 AC2 19 GLN A 625 SER A 630 HIS A 633 ALA A 637 SITE 5 AC2 19 TYR A 642 CA A 801 HEM A 803 SITE 1 AC3 22 GLY A 76 TYR A 78 GLN A 294 VAL A 295 SITE 2 AC3 22 GLY A 298 THR A 301 ALA A 302 ARG A 332 SITE 3 AC3 22 HIS A 335 ILE A 336 GLU A 411 ALA A 634 SITE 4 AC3 22 HIS A 635 PHE A 639 MET A 682 ARG A 721 SITE 5 AC3 22 ARG A 724 ASP A 728 PHE A 731 ILE A 732 SITE 6 AC3 22 CA A 801 HEM A 802 CRYST1 93.682 123.096 130.845 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010674 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008124 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007643 0.00000