HEADER OXIDOREDUCTASE 29-SEP-17 6ELS TITLE STRUCTURE OF LATENT APPLE TYROSINASE (MDPPO1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPHENOL OXIDASE, CHLOROPLASTIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CATECHOL OXIDASE, TYROSINASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MALUS DOMESTICA; SOURCE 3 ORGANISM_COMMON: APPLE; SOURCE 4 ORGANISM_TAXID: 3750; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS POLYPHENOL OXIDASE, TYROSINASE, LATENT FORM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.KAMPATSIKAS,A.BIJELIC,M.PRETZLER,A.ROMPEL REVDAT 4 01-MAY-24 6ELS 1 REMARK REVDAT 3 29-MAY-19 6ELS 1 JRNL REVDAT 2 24-APR-19 6ELS 1 JRNL REVDAT 1 20-MAR-19 6ELS 0 JRNL AUTH I.KAMPATSIKAS,A.BIJELIC,M.PRETZLER,A.ROMPEL JRNL TITL A PEPTIDE-INDUCED SELF-CLEAVAGE REACTION INITIATES THE JRNL TITL 2 ACTIVATION OF TYROSINASE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 58 7475 2019 JRNL REFN ESSN 1521-3773 JRNL PMID 30825403 JRNL DOI 10.1002/ANIE.201901332 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 104707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5236 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4816 - 4.1823 1.00 3580 189 0.1572 0.1578 REMARK 3 2 4.1823 - 3.3199 1.00 3446 181 0.1445 0.1805 REMARK 3 3 3.3199 - 2.9003 1.00 3403 179 0.1542 0.1796 REMARK 3 4 2.9003 - 2.6352 1.00 3364 177 0.1494 0.2026 REMARK 3 5 2.6352 - 2.4463 1.00 3366 178 0.1534 0.1680 REMARK 3 6 2.4463 - 2.3021 1.00 3338 175 0.1344 0.1642 REMARK 3 7 2.3021 - 2.1868 1.00 3376 178 0.1269 0.1625 REMARK 3 8 2.1868 - 2.0916 1.00 3343 176 0.1346 0.1678 REMARK 3 9 2.0916 - 2.0111 1.00 3320 175 0.1387 0.1825 REMARK 3 10 2.0111 - 1.9417 1.00 3324 175 0.1390 0.2018 REMARK 3 11 1.9417 - 1.8810 1.00 3329 175 0.1336 0.1836 REMARK 3 12 1.8810 - 1.8272 1.00 3302 174 0.1268 0.1803 REMARK 3 13 1.8272 - 1.7791 1.00 3348 176 0.1149 0.1661 REMARK 3 14 1.7791 - 1.7357 1.00 3294 173 0.1119 0.1532 REMARK 3 15 1.7357 - 1.6962 1.00 3302 174 0.1116 0.1787 REMARK 3 16 1.6962 - 1.6601 1.00 3308 174 0.1096 0.1681 REMARK 3 17 1.6601 - 1.6269 1.00 3314 175 0.1125 0.1705 REMARK 3 18 1.6269 - 1.5962 1.00 3278 172 0.1184 0.1775 REMARK 3 19 1.5962 - 1.5677 1.00 3307 174 0.1172 0.1703 REMARK 3 20 1.5677 - 1.5411 0.99 3264 172 0.1318 0.1719 REMARK 3 21 1.5411 - 1.5163 1.00 3289 173 0.1430 0.2028 REMARK 3 22 1.5163 - 1.4929 1.00 3277 172 0.1506 0.1771 REMARK 3 23 1.4929 - 1.4710 0.99 3286 173 0.1590 0.2077 REMARK 3 24 1.4710 - 1.4503 0.99 3260 172 0.1596 0.2354 REMARK 3 25 1.4503 - 1.4307 0.99 3307 174 0.1652 0.2183 REMARK 3 26 1.4307 - 1.4121 0.99 3238 170 0.1716 0.2223 REMARK 3 27 1.4121 - 1.3944 0.99 3291 174 0.1787 0.2073 REMARK 3 28 1.3944 - 1.3776 0.99 3237 170 0.1938 0.2303 REMARK 3 29 1.3776 - 1.3616 0.99 3251 171 0.2181 0.2513 REMARK 3 30 1.3616 - 1.3463 0.95 3129 165 0.2478 0.2813 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3723 REMARK 3 ANGLE : 1.287 5062 REMARK 3 CHIRALITY : 0.105 547 REMARK 3 PLANARITY : 0.010 665 REMARK 3 DIHEDRAL : 15.726 1357 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ELS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97242 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104709 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.346 REMARK 200 RESOLUTION RANGE LOW (A) : 46.454 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: HOMOLOGY MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 MG/ML LATENT ENZYME, 100 MM TRIS REMARK 280 -HCL PH 8.25, 13 % PEG8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.35000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.98000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.98000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.35000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 LYS A 1 REMARK 465 PRO A 2 REMARK 465 ILE A 3 REMARK 465 ALA A 4 REMARK 465 PRO A 5 REMARK 465 PRO A 6 REMARK 465 ASP A 7 REMARK 465 VAL A 8 REMARK 465 SER A 9 REMARK 465 LYS A 10 REMARK 465 CYS A 11 REMARK 465 GLY A 12 REMARK 465 PRO A 13 REMARK 465 ALA A 14 REMARK 465 ASP A 15 REMARK 465 LEU A 16 REMARK 465 PRO A 17 REMARK 465 GLN A 18 REMARK 465 GLY A 19 REMARK 465 ALA A 20 REMARK 465 VAL A 21 REMARK 465 PRO A 22 REMARK 465 THR A 23 REMARK 465 ASN A 24 REMARK 465 CYS A 25 REMARK 465 CYS A 26 REMARK 465 PRO A 27 REMARK 465 PRO A 28 REMARK 465 PRO A 29 REMARK 465 SER A 30 REMARK 465 THR A 31 REMARK 465 ALA A 349 REMARK 465 LEU A 350 REMARK 465 SER A 351 REMARK 465 LYS A 352 REMARK 465 VAL A 353 REMARK 465 ALA A 354 REMARK 465 LYS A 355 REMARK 465 LYS A 356 REMARK 465 LEU A 357 REMARK 465 GLY A 358 REMARK 465 VAL A 359 REMARK 465 LYS A 454 REMARK 465 HIS A 455 REMARK 465 LYS A 456 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 ASP A 91 CG OD1 OD2 REMARK 470 TYR A 94 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 95 CG OD1 OD2 REMARK 470 GLN A 96 CG CD OE1 NE2 REMARK 470 VAL A 97 CG1 CG2 REMARK 470 PHE A 99 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PRO A 100 CG CD REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LEU A 102 CG CD1 CD2 REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 LEU A 104 CG CD1 CD2 REMARK 470 GLN A 105 CG CD OE1 NE2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 LYS A 347 CG CD CE NZ REMARK 470 LYS A 389 CG CD CE NZ REMARK 470 LYS A 392 CG CD CE NZ REMARK 470 LYS A 394 CG CD CE NZ REMARK 470 HIS A 453 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 457 CG CD CE NZ REMARK 470 ASP A 480 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 734 O HOH A 841 1.93 REMARK 500 O HOH A 715 O HOH A 1144 1.93 REMARK 500 OD1 ASP A 299 NH2 ARG A 317 1.94 REMARK 500 SG CYS A 90 CE1 HIS A 107 2.00 REMARK 500 O HOH A 733 O HOH A 1024 2.01 REMARK 500 O HOH A 937 O HOH A 1075 2.04 REMARK 500 OD1 ASP A 186 O HOH A 701 2.06 REMARK 500 O HOH A 944 O HOH A 1209 2.06 REMARK 500 O HOH A 735 O HOH A 881 2.08 REMARK 500 OE1 GLU A 321 O HOH A 702 2.08 REMARK 500 O HOH A 713 O HOH A 1227 2.09 REMARK 500 O HOH A 924 O HOH A 1280 2.13 REMARK 500 O HOH A 937 O HOH A 1007 2.14 REMARK 500 NE2 GLN A 55 O HOH A 703 2.15 REMARK 500 NZ LYS A 458 O HOH A 704 2.18 REMARK 500 O HOH A 982 O HOH A 1278 2.18 REMARK 500 O HOH A 1207 O HOH A 1329 2.19 REMARK 500 O HOH A 721 O HOH A 1141 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 734 O HOH A 1222 1455 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 100 -70.10 -53.76 REMARK 500 VAL A 206 -75.33 -102.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 436 PRO A 437 -137.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 601 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 86 NE2 REMARK 620 2 HIS A 107 NE2 94.9 REMARK 620 3 HIS A 116 NE2 130.5 123.3 REMARK 620 4 O A 603 O 84.7 97.0 116.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 602 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 238 NE2 REMARK 620 2 HIS A 242 NE2 101.9 REMARK 620 3 HIS A 272 NE2 107.6 140.1 REMARK 620 4 O A 603 O 110.2 107.8 86.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O A 603 DBREF 6ELS A -1 504 PDB 6ELS 6ELS -1 504 SEQRES 1 A 506 GLY PRO LYS PRO ILE ALA PRO PRO ASP VAL SER LYS CYS SEQRES 2 A 506 GLY PRO ALA ASP LEU PRO GLN GLY ALA VAL PRO THR ASN SEQRES 3 A 506 CYS CYS PRO PRO PRO SER THR LYS ILE ILE ASP PHE LYS SEQRES 4 A 506 LEU PRO ALA PRO ALA LYS LEU ARG ILE ARG PRO PRO ALA SEQRES 5 A 506 HIS ALA VAL ASP GLN ALA TYR ARG ASP LYS TYR TYR LYS SEQRES 6 A 506 ALA MET GLU LEU MET LYS ALA LEU PRO ASP ASP ASP PRO SEQRES 7 A 506 ARG SER PHE LYS GLN GLN ALA ALA VAL HIS CYS ALA TYR SEQRES 8 A 506 CYS ASP GLY ALA TYR ASP GLN VAL GLY PHE PRO GLU LEU SEQRES 9 A 506 GLU LEU GLN ILE HIS ASN SER TRP LEU PHE PHE PRO PHE SEQRES 10 A 506 HIS ARG TYR TYR LEU TYR PHE PHE GLU LYS ILE LEU GLY SEQRES 11 A 506 LYS LEU ILE ASN ASP PRO THR PHE ALA LEU PRO PHE TRP SEQRES 12 A 506 ASN TRP ASP SER PRO ALA GLY MET PRO LEU PRO ALA ILE SEQRES 13 A 506 TYR ALA ASP PRO LYS SER PRO LEU TYR ASP LYS LEU ARG SEQRES 14 A 506 SER ALA ASN HIS GLN PRO PRO THR LEU VAL ASP LEU ASP SEQRES 15 A 506 TYR ASN GLY THR GLU ASP ASN VAL SER LYS GLU THR THR SEQRES 16 A 506 ILE ASN ALA ASN LEU LYS ILE MET TYR ARG GLN MET VAL SEQRES 17 A 506 SER ASN SER LYS ASN ALA LYS LEU PHE PHE GLY ASN PRO SEQRES 18 A 506 TYR ARG ALA GLY ASP GLU PRO ASP PRO GLY GLY GLY SER SEQRES 19 A 506 ILE GLU GLY THR PRO HIS ALA PRO VAL HIS LEU TRP THR SEQRES 20 A 506 GLY ASP ASN THR GLN PRO ASN PHE GLU ASP MET GLY ASN SEQRES 21 A 506 PHE TYR SER ALA GLY ARG ASP PRO ILE PHE PHE ALA HIS SEQRES 22 A 506 HIS SER ASN VAL ASP ARG MET TRP SER ILE TRP LYS THR SEQRES 23 A 506 LEU GLY GLY LYS ARG THR ASP LEU THR ASP SER ASP TRP SEQRES 24 A 506 LEU ASP SER GLY PHE LEU PHE TYR ASN GLU ASN ALA GLU SEQRES 25 A 506 LEU VAL ARG VAL LYS VAL ARG ASP CYS LEU GLU THR LYS SEQRES 26 A 506 ASN LEU GLY TYR VAL TYR GLN ASP VAL ASP ILE PRO TRP SEQRES 27 A 506 LEU SER SER LYS PRO THR PRO ARG ARG ALA LYS VAL ALA SEQRES 28 A 506 LEU SER LYS VAL ALA LYS LYS LEU GLY VAL ALA HIS ALA SEQRES 29 A 506 ALA VAL ALA SER SER SER LYS VAL VAL ALA GLY THR GLU SEQRES 30 A 506 PHE PRO ILE SER LEU GLY SER LYS ILE SER THR VAL VAL SEQRES 31 A 506 LYS ARG PRO LYS GLN LYS LYS ARG SER LYS LYS ALA LYS SEQRES 32 A 506 GLU ASP GLU GLU GLU ILE LEU VAL ILE GLU GLY ILE GLU SEQRES 33 A 506 PHE ASP ARG ASP VAL ALA VAL LYS PHE ASP VAL TYR VAL SEQRES 34 A 506 ASN ASP VAL ASP ASP LEU PRO SER GLY PRO ASP LYS THR SEQRES 35 A 506 GLU PHE ALA GLY SER PHE VAL SER VAL PRO HIS SER HIS SEQRES 36 A 506 LYS HIS LYS LYS LYS MET ASN THR ILE LEU ARG LEU GLY SEQRES 37 A 506 LEU THR ASP LEU LEU GLU GLU ILE GLU ALA GLU ASP ASP SEQRES 38 A 506 ASP SER VAL VAL VAL THR LEU VAL PRO LYS PHE GLY ALA SEQRES 39 A 506 VAL LYS ILE GLY GLY ILE LYS ILE GLU PHE ALA SER HET CU A 601 1 HET CU A 602 1 HET O A 603 1 HETNAM CU COPPER (II) ION HETNAM O OXYGEN ATOM FORMUL 2 CU 2(CU 2+) FORMUL 4 O O FORMUL 5 HOH *638(H2 O) HELIX 1 AA1 PRO A 49 VAL A 53 5 5 HELIX 2 AA2 ASP A 54 LEU A 71 1 18 HELIX 3 AA3 SER A 78 ASP A 91 1 14 HELIX 4 AA4 LEU A 111 ILE A 131 1 21 HELIX 5 AA5 SER A 145 MET A 149 5 5 HELIX 6 AA6 PRO A 152 ASP A 157 1 6 HELIX 7 AA7 SER A 189 VAL A 206 1 18 HELIX 8 AA8 ASN A 211 GLY A 217 1 7 HELIX 9 AA9 GLY A 231 THR A 236 1 6 HELIX 10 AB1 PRO A 237 GLY A 246 1 10 HELIX 11 AB2 SER A 261 ASP A 265 5 5 HELIX 12 AB3 PRO A 266 THR A 284 1 19 HELIX 13 AB4 ASP A 294 ASP A 299 1 6 HELIX 14 AB5 ARG A 317 LEU A 320 5 4 HELIX 15 AB6 GLU A 321 LEU A 325 5 5 HELIX 16 AB7 PRO A 343 VAL A 348 5 6 HELIX 17 AB8 HIS A 361 SER A 366 1 6 HELIX 18 AB9 ALA A 372 PHE A 376 5 5 HELIX 19 AC1 SER A 397 GLU A 404 1 8 HELIX 20 AC2 LEU A 467 ILE A 474 1 8 SHEET 1 AA1 3 ILE A 33 ASP A 35 0 SHEET 2 AA1 3 LEU A 311 LYS A 315 1 O ARG A 313 N ILE A 34 SHEET 3 AA1 3 GLY A 301 TYR A 305 -1 N PHE A 304 O VAL A 312 SHEET 1 AA2 2 ARG A 45 ARG A 47 0 SHEET 2 AA2 2 TYR A 327 TYR A 329 1 O VAL A 328 N ARG A 47 SHEET 1 AA3 5 LYS A 369 VAL A 370 0 SHEET 2 AA3 5 ILE A 384 LYS A 389 1 O SER A 385 N LYS A 369 SHEET 3 AA3 5 SER A 481 PHE A 490 -1 O VAL A 482 N VAL A 388 SHEET 4 AA3 5 VAL A 421 VAL A 427 -1 N LYS A 422 O LYS A 489 SHEET 5 AA3 5 PHE A 442 SER A 448 -1 O GLY A 444 N VAL A 425 SHEET 1 AA4 2 ILE A 378 SER A 379 0 SHEET 2 AA4 2 LYS A 494 ILE A 495 -1 O ILE A 495 N ILE A 378 SHEET 1 AA5 3 LYS A 458 GLY A 466 0 SHEET 2 AA5 3 GLU A 405 ASP A 416 -1 N PHE A 415 O MET A 459 SHEET 3 AA5 3 GLY A 497 ALA A 503 -1 O GLU A 501 N ILE A 407 LINK NE2 HIS A 86 CU CU A 601 1555 1555 1.89 LINK NE2 HIS A 107 CU CU A 601 1555 1555 2.45 LINK NE2 HIS A 116 CU CU A 601 1555 1555 2.25 LINK NE2 HIS A 238 CU CU A 602 1555 1555 2.04 LINK NE2 HIS A 242 CU CU A 602 1555 1555 2.07 LINK NE2 HIS A 272 CU CU A 602 1555 1555 2.24 LINK CU CU A 601 O O A 603 1555 1555 2.45 LINK CU CU A 602 O O A 603 1555 1555 1.90 CISPEP 1 PRO A 173 PRO A 174 0 12.36 CISPEP 2 THR A 236 PRO A 237 0 9.77 CISPEP 3 GLU A 254 ASP A 255 0 -9.60 CISPEP 4 PHE A 376 PRO A 377 0 3.56 SITE 1 AC1 4 HIS A 86 HIS A 107 HIS A 116 O A 603 SITE 1 AC2 4 HIS A 238 HIS A 242 HIS A 272 O A 603 SITE 1 AC3 9 HIS A 86 HIS A 107 HIS A 238 HIS A 242 SITE 2 AC3 9 PHE A 259 PHE A 268 HIS A 272 CU A 601 SITE 3 AC3 9 CU A 602 CRYST1 50.700 80.150 115.960 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019724 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008624 0.00000