HEADER TRANSFERASE 01-OCT-17 6EM6 TITLE CRYSTAL STRUCTURE OF THE PROTEIN-KINASE A CATALYTIC SUBUNIT FROM TITLE 2 CRITECULUS GRISEUS IN COMPLEX WITH COMPOUNDS RKP032 AND ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: UPF0418 PROTEIN FAM164A; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: PKI 5-22 WITH R14RBS MUTATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 3 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 4 ORGANISM_TAXID: 10029; SOURCE 5 ORGAN: OVARY; SOURCE 6 TISSUE: OVARY; SOURCE 7 GENE: PRKACA; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 13 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 14 ORGANISM_TAXID: 10029 KEYWDS TRANSFERASE, PEPTIDIC LIGAND, RIBOSE, COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.M.MUELLER,A.HEINE,G.KLEBE REVDAT 4 06-NOV-24 6EM6 1 HETSYN REVDAT 3 29-JUL-20 6EM6 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 15-MAY-19 6EM6 1 COMPND JRNL REVDAT 1 10-OCT-18 6EM6 0 JRNL AUTH J.M.MUELLER,R.KIRSCHNER,A.GEYER,G.KLEBE JRNL TITL CONCEPTIONAL DESIGN OF SELF-ASSEMBLING BISUBSTRATE-LIKE JRNL TITL 2 INHIBITORS OF PROTEIN KINASE A RESULTING IN A BORONIC ACID JRNL TITL 3 GLUTAMATE LINKAGE JRNL REF ACS OMEGA 2019 JRNL REFN ESSN 2470-1343 JRNL DOI 10.1021/ACSOMEGA.8B02364 REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 49355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3906 - 4.2865 0.99 2793 147 0.1673 0.1682 REMARK 3 2 4.2865 - 3.4028 0.99 2671 141 0.1605 0.1676 REMARK 3 3 3.4028 - 2.9728 1.00 2659 140 0.1792 0.1983 REMARK 3 4 2.9728 - 2.7010 0.99 2624 138 0.1777 0.1874 REMARK 3 5 2.7010 - 2.5074 0.99 2614 138 0.1712 0.1698 REMARK 3 6 2.5074 - 2.3596 1.00 2604 137 0.1641 0.1871 REMARK 3 7 2.3596 - 2.2415 1.00 2649 139 0.1653 0.1836 REMARK 3 8 2.2415 - 2.1439 1.00 2594 137 0.1652 0.2222 REMARK 3 9 2.1439 - 2.0614 0.99 2601 137 0.1752 0.1793 REMARK 3 10 2.0614 - 1.9902 0.99 2581 135 0.1844 0.2269 REMARK 3 11 1.9902 - 1.9280 1.00 2586 137 0.1927 0.2238 REMARK 3 12 1.9280 - 1.8729 1.00 2599 136 0.1781 0.2033 REMARK 3 13 1.8729 - 1.8236 1.00 2603 137 0.1811 0.2155 REMARK 3 14 1.8236 - 1.7791 1.00 2583 136 0.1959 0.2118 REMARK 3 15 1.7791 - 1.7386 0.99 2575 136 0.2017 0.2693 REMARK 3 16 1.7386 - 1.7016 0.99 2569 135 0.2106 0.2545 REMARK 3 17 1.7016 - 1.6676 1.00 2594 137 0.2164 0.2492 REMARK 3 18 1.6676 - 1.6361 0.93 2388 125 0.2467 0.2906 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2982 REMARK 3 ANGLE : 0.977 4062 REMARK 3 CHIRALITY : 0.052 436 REMARK 3 PLANARITY : 0.006 519 REMARK 3 DIHEDRAL : 16.942 1748 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.7828 29.9637 -16.6615 REMARK 3 T TENSOR REMARK 3 T11: 0.2495 T22: 0.3519 REMARK 3 T33: 0.2613 T12: 0.1052 REMARK 3 T13: -0.0360 T23: -0.0528 REMARK 3 L TENSOR REMARK 3 L11: 0.1077 L22: 0.1281 REMARK 3 L33: 0.1483 L12: 0.1385 REMARK 3 L13: -0.1495 L23: -0.1502 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: -0.0118 S13: 0.2585 REMARK 3 S21: -0.0133 S22: -0.0852 S23: 0.0575 REMARK 3 S31: -0.2932 S32: -0.3353 S33: -0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1886 15.9575 3.6830 REMARK 3 T TENSOR REMARK 3 T11: 0.2570 T22: 0.2891 REMARK 3 T33: 0.2545 T12: 0.0054 REMARK 3 T13: 0.0432 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 0.4043 L22: 0.3665 REMARK 3 L33: 0.3003 L12: 0.3134 REMARK 3 L13: 0.2677 L23: 0.0481 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: -0.2338 S13: -0.1019 REMARK 3 S21: 0.1694 S22: -0.1152 S23: -0.2400 REMARK 3 S31: -0.0183 S32: 0.0765 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5890 13.7906 2.5421 REMARK 3 T TENSOR REMARK 3 T11: 0.1731 T22: 0.2881 REMARK 3 T33: 0.2356 T12: -0.0374 REMARK 3 T13: -0.0154 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.2330 L22: 0.6111 REMARK 3 L33: 0.2127 L12: -0.3787 REMARK 3 L13: 0.0631 L23: -0.0514 REMARK 3 S TENSOR REMARK 3 S11: 0.1091 S12: -0.3414 S13: -0.2414 REMARK 3 S21: 0.1780 S22: -0.2194 S23: -0.1268 REMARK 3 S31: -0.0633 S32: 0.0151 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0016 16.1803 -12.8282 REMARK 3 T TENSOR REMARK 3 T11: 0.1321 T22: 0.1868 REMARK 3 T33: 0.1839 T12: -0.0105 REMARK 3 T13: -0.0002 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.4078 L22: 0.7037 REMARK 3 L33: 0.8188 L12: 0.0446 REMARK 3 L13: -0.1578 L23: -0.1407 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: -0.0914 S13: -0.0538 REMARK 3 S21: -0.0139 S22: -0.0151 S23: -0.0298 REMARK 3 S31: -0.0012 S32: -0.1243 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3091 19.8631 -22.9211 REMARK 3 T TENSOR REMARK 3 T11: 0.1782 T22: 0.1388 REMARK 3 T33: 0.1964 T12: -0.0141 REMARK 3 T13: 0.0363 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.5510 L22: 1.2006 REMARK 3 L33: 0.7541 L12: 0.0118 REMARK 3 L13: 0.3489 L23: 0.2769 REMARK 3 S TENSOR REMARK 3 S11: 0.0168 S12: 0.0436 S13: 0.0733 REMARK 3 S21: -0.1148 S22: -0.0191 S23: -0.1873 REMARK 3 S31: -0.0694 S32: -0.0043 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7730 18.2610 -37.0265 REMARK 3 T TENSOR REMARK 3 T11: 0.3835 T22: 0.2469 REMARK 3 T33: 0.1508 T12: 0.0062 REMARK 3 T13: 0.0248 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.4803 L22: 0.5784 REMARK 3 L33: 0.5098 L12: 0.0362 REMARK 3 L13: 0.0028 L23: -0.2280 REMARK 3 S TENSOR REMARK 3 S11: -0.0208 S12: 0.3905 S13: 0.0919 REMARK 3 S21: -0.5829 S22: 0.0388 S23: 0.0136 REMARK 3 S31: -0.2128 S32: -0.1150 S33: -0.0156 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4032 11.8037 -7.6650 REMARK 3 T TENSOR REMARK 3 T11: 0.1451 T22: 0.2334 REMARK 3 T33: 0.2621 T12: -0.0080 REMARK 3 T13: 0.0027 T23: -0.0464 REMARK 3 L TENSOR REMARK 3 L11: 0.0478 L22: 0.7357 REMARK 3 L33: 1.4194 L12: -0.0121 REMARK 3 L13: -0.4974 L23: -0.2747 REMARK 3 S TENSOR REMARK 3 S11: -0.0154 S12: -0.0610 S13: -0.1320 REMARK 3 S21: 0.0974 S22: -0.0182 S23: -0.0016 REMARK 3 S31: 0.1612 S32: -0.0840 S33: -0.0018 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EM6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200006615. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49359 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 42.376 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.860 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : 23.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49300 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES-BIS-TRIS, 55 MM LITHIUM REMARK 280 CHLORIDE, 10 MM MAGNESIUM CHLORIDE, 1 MM DTT, 0.1 MM SODIUM EDTA, REMARK 280 0.25 MM MEGA 8, 0.7 MM PEPTIDIC LIGAND, 2 MM ADP, 16% V/V REMARK 280 METHANOL/WATER IN RESERVOIR, PH 6.9, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.21950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.51850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.58100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.51850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.21950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.58100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 GLY A 9 REMARK 465 SEP A 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 GLU A 17 CG CD OE1 OE2 REMARK 470 LYS A 21 CD CE NZ REMARK 470 GLU A 24 OE1 OE2 REMARK 470 GLU A 25 CD OE1 OE2 REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 47 CD CE NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 81 CE NZ REMARK 470 LYS A 83 NZ REMARK 470 LYS A 105 CD CE NZ REMARK 470 ILE A 163 CD1 REMARK 470 GLN A 176 CG CD OE1 NE2 REMARK 470 GLN A 177 CD OE1 NE2 REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LEU A 198 CG CD1 CD2 REMARK 470 LYS A 213 CE NZ REMARK 470 LYS A 217 CE NZ REMARK 470 ILE A 244 CD1 REMARK 470 GLU A 248 OE1 OE2 REMARK 470 LYS A 254 CE NZ REMARK 470 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 275 CG1 CG2 REMARK 470 LYS A 279 CE NZ REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 ASN A 286 OD1 ND2 REMARK 470 LYS A 295 NZ REMARK 470 ILE A 303 CD1 REMARK 470 GLU A 311 CD OE1 OE2 REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 ILE A 335 CG1 CG2 CD1 REMARK 470 ARG A 336 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 339 CG1 CG2 CD1 REMARK 470 LYS A 345 CD CE NZ REMARK 470 ILE C 27 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 127 HG SER A 130 1.51 REMARK 500 HH22 ARG A 308 O HOH A 501 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 99 105.45 -160.16 REMARK 500 ASP A 166 38.55 -143.88 REMARK 500 ASP A 184 92.52 74.87 REMARK 500 PHE A 318 106.68 -164.85 REMARK 500 LYS A 319 55.19 -103.65 REMARK 500 ARG C 20 46.85 -108.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 53 OG REMARK 620 2 ADP A 401 O3B 91.2 REMARK 620 3 HOH A 549 O 170.3 85.4 REMARK 620 4 HOH A 609 O 89.7 89.4 81.3 REMARK 620 5 HOH A 630 O 87.4 176.9 95.6 87.9 REMARK 620 6 HOH A 657 O 92.0 95.7 97.4 174.6 87.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 184 OD2 REMARK 620 2 ADP A 401 O1B 98.2 REMARK 620 3 ADP A 401 O1A 90.7 92.5 REMARK 620 4 HOH A 507 O 82.8 177.8 89.5 REMARK 620 5 HOH A 571 O 171.6 89.9 91.3 89.0 REMARK 620 6 HOH A 625 O 92.5 90.6 175.2 87.3 85.0 REMARK 620 N 1 2 3 4 5 DBREF 6EM6 A 0 350 UNP P25321 KAPCA_CRIGR 1 351 DBREF 6EM6 C 10 27 UNP G3HK48 G3HK48_CRIGR 6 23 SEQADV 6EM6 GLY A -2 UNP P25321 EXPRESSION TAG SEQADV 6EM6 HIS A -1 UNP P25321 EXPRESSION TAG SEQADV 6EM6 SER C 23 UNP G3HK48 ARG 19 ENGINEERED MUTATION SEQRES 1 A 353 GLY HIS MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SEP SEQRES 2 A 353 GLU GLN GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS SEQRES 3 A 353 GLU GLU PHE LEU LYS LYS TRP GLU SER PRO SER GLN ASN SEQRES 4 A 353 THR ALA GLN LEU ASP HIS PHE ASP ARG ILE LYS THR LEU SEQRES 5 A 353 GLY THR GLY SER PHE GLY ARG VAL MET LEU VAL LYS HIS SEQRES 6 A 353 LYS GLU THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP SEQRES 7 A 353 LYS GLN LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR SEQRES 8 A 353 LEU ASN GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO SEQRES 9 A 353 PHE LEU VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER SEQRES 10 A 353 ASN LEU TYR MET VAL MET GLU TYR VAL PRO GLY GLY GLU SEQRES 11 A 353 MET PHE SER HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU SEQRES 12 A 353 PRO HIS ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR SEQRES 13 A 353 PHE GLU TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP SEQRES 14 A 353 LEU LYS PRO GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR SEQRES 15 A 353 ILE GLN VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS SEQRES 16 A 353 GLY ARG THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU SEQRES 17 A 353 ALA PRO GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA SEQRES 18 A 353 VAL ASP TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET SEQRES 19 A 353 ALA ALA GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE SEQRES 20 A 353 GLN ILE TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE SEQRES 21 A 353 PRO SER HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG SEQRES 22 A 353 ASN LEU LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN SEQRES 23 A 353 LEU LYS ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP SEQRES 24 A 353 PHE ALA THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS SEQRES 25 A 353 VAL GLU ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY SEQRES 26 A 353 ASP THR SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE SEQRES 27 A 353 ARG VAL SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE THR SEQRES 28 A 353 GLU PHE SEQRES 1 C 18 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 C 18 SER ARG ASN ALA ILE MODRES 6EM6 SEP A 139 SER MODIFIED RESIDUE MODRES 6EM6 TPO A 197 THR MODIFIED RESIDUE MODRES 6EM6 SEP A 338 SER MODIFIED RESIDUE HET SEP A 139 14 HET TPO A 197 17 HET SEP A 338 14 HET ADP A 401 39 HET MG A 402 1 HET MG A 403 1 HET RIP C 101 3 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM RIP BETA-D-RIBOPYRANOSE HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE HETSYN RIP BETA-D-RIBOSE; D-RIBOSE; RIBOSE; RIBOSE(PYRANOSE FORM) FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG 2(MG 2+) FORMUL 6 RIP C5 H10 O5 FORMUL 7 HOH *219(H2 O) HELIX 1 AA1 GLU A 11 SER A 32 1 22 HELIX 2 AA2 GLN A 39 ASP A 41 5 3 HELIX 3 AA3 LYS A 76 LEU A 82 1 7 HELIX 4 AA4 GLN A 84 VAL A 98 1 15 HELIX 5 AA5 GLU A 127 GLY A 136 1 10 HELIX 6 AA6 SEP A 139 LEU A 160 1 22 HELIX 7 AA7 LYS A 168 GLU A 170 5 3 HELIX 8 AA8 THR A 201 LEU A 205 5 5 HELIX 9 AA9 ALA A 206 LEU A 211 1 6 HELIX 10 AB1 LYS A 217 GLY A 234 1 18 HELIX 11 AB2 GLN A 242 SER A 252 1 11 HELIX 12 AB3 SER A 262 LEU A 273 1 12 HELIX 13 AB4 ASP A 276 ARG A 280 5 5 HELIX 14 AB5 VAL A 288 ASN A 293 1 6 HELIX 15 AB6 HIS A 294 ALA A 298 5 5 HELIX 16 AB7 ASP A 301 GLN A 307 1 7 HELIX 17 AB8 GLY A 344 THR A 348 5 5 HELIX 18 AB9 THR C 11 GLY C 19 1 9 SHEET 1 AA1 5 PHE A 43 THR A 51 0 SHEET 2 AA1 5 ARG A 56 HIS A 62 -1 O LEU A 59 N LYS A 47 SHEET 3 AA1 5 HIS A 68 ASP A 75 -1 O MET A 71 N MET A 58 SHEET 4 AA1 5 ASN A 115 GLU A 121 -1 O MET A 120 N ALA A 70 SHEET 5 AA1 5 LEU A 106 LYS A 111 -1 N GLU A 107 O VAL A 119 SHEET 1 AA2 2 LEU A 162 ILE A 163 0 SHEET 2 AA2 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AA3 2 LEU A 172 ILE A 174 0 SHEET 2 AA3 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 LINK C PHE A 138 N SEP A 139 1555 1555 1.33 LINK C SEP A 139 N GLU A 140 1555 1555 1.32 LINK C TRP A 196 N TPO A 197 1555 1555 1.33 LINK C TPO A 197 N LEU A 198 1555 1555 1.33 LINK C VAL A 337 N SEP A 338 1555 1555 1.32 LINK C SEP A 338 N ILE A 339 1555 1555 1.34 LINK CB SER C 23 O5 RIP C 101 1555 1555 1.37 LINK OG SER A 53 MG MG A 402 1555 1555 2.12 LINK OD2 ASP A 184 MG MG A 403 1555 1555 2.18 LINK O3B ADP A 401 MG MG A 402 1555 1555 2.09 LINK O1B ADP A 401 MG MG A 403 1555 1555 1.84 LINK O1A ADP A 401 MG MG A 403 1555 1555 2.21 LINK MG MG A 402 O HOH A 549 1555 1555 2.15 LINK MG MG A 402 O HOH A 609 1555 1555 1.90 LINK MG MG A 402 O HOH A 630 1555 1555 2.04 LINK MG MG A 402 O HOH A 657 1555 1555 2.01 LINK MG MG A 403 O HOH A 507 1555 1555 2.12 LINK MG MG A 403 O HOH A 571 1555 1555 2.04 LINK MG MG A 403 O HOH A 625 1555 1555 2.17 CRYST1 70.439 73.162 77.037 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014197 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013668 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012981 0.00000