HEADER TRANSFERASE 02-OCT-17 6EMC OBSLTE 15-MAY-19 6EMC 6I2B TITLE CRYSTAL STRUCTURE OF THE PROTEIN-KINASE A CATALYTIC SUBUNIT FROM TITLE 2 CRITECULUS GRISEUS IN COMPLEX WITH COMPOUNDS RKP153 AND RKP117 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR; COMPND 9 CHAIN: D; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: PKI 5-22 WITH T16RBT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 3 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 4 ORGANISM_TAXID: 10029; SOURCE 5 ORGAN: OVARY; SOURCE 6 TISSUE: OVARY; SOURCE 7 GENE: PRKACA; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: GOLD PLYSS AG; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 14 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 15 ORGANISM_TAXID: 10029 KEYWDS COMPLEX, PEPTIDIC LIGAND, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.MUELLER,A.HEINE,G.KLEBE REVDAT 2 15-MAY-19 6EMC 1 OBSLTE REVDAT 1 31-OCT-18 6EMC 0 JRNL AUTH J.M.MUELLER,R.KIRSCHNER,A.HEINE,A.GEYER,G.KLEBE JRNL TITL CRYSTAL STRUCTURE OF THE PROTEIN-KINASE A CATALYTIC SUBUNIT JRNL TITL 2 FROM CRITECULUS GRISEUS IN COMPLEX WITH COMPOUNDS RKP153 AND JRNL TITL 3 RKP117 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 29617 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9282 - 4.3734 0.99 2624 138 0.1800 0.2087 REMARK 3 2 4.3734 - 3.4716 1.00 2583 136 0.1806 0.1854 REMARK 3 3 3.4716 - 3.0328 0.99 2547 134 0.2299 0.2995 REMARK 3 4 3.0328 - 2.7555 1.00 2581 135 0.2406 0.2879 REMARK 3 5 2.7555 - 2.5581 1.00 2554 135 0.2366 0.2829 REMARK 3 6 2.5581 - 2.4072 1.00 2536 133 0.2263 0.2911 REMARK 3 7 2.4072 - 2.2867 0.99 2545 134 0.2219 0.2507 REMARK 3 8 2.2867 - 2.1871 1.00 2556 135 0.2260 0.2636 REMARK 3 9 2.1871 - 2.1029 1.00 2551 134 0.2428 0.3119 REMARK 3 10 2.1029 - 2.0304 1.00 2581 136 0.2619 0.3002 REMARK 3 11 2.0304 - 1.9669 0.97 2479 130 0.2835 0.3306 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2959 REMARK 3 ANGLE : 0.769 4025 REMARK 3 CHIRALITY : 0.045 424 REMARK 3 PLANARITY : 0.004 555 REMARK 3 DIHEDRAL : 17.663 1747 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7154 -20.7098 20.2022 REMARK 3 T TENSOR REMARK 3 T11: 0.6135 T22: 0.4167 REMARK 3 T33: 0.3477 T12: -0.0238 REMARK 3 T13: -0.0396 T23: 0.1184 REMARK 3 L TENSOR REMARK 3 L11: 0.1142 L22: 0.2612 REMARK 3 L33: 0.0709 L12: -0.0306 REMARK 3 L13: -0.0314 L23: 0.1664 REMARK 3 S TENSOR REMARK 3 S11: -0.1592 S12: -0.3078 S13: -0.1094 REMARK 3 S21: 0.5154 S22: 0.0643 S23: -0.0625 REMARK 3 S31: 0.3767 S32: 0.1268 S33: -0.0314 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7057 -18.7691 18.7588 REMARK 3 T TENSOR REMARK 3 T11: 0.6100 T22: 0.2963 REMARK 3 T33: 0.2457 T12: 0.1073 REMARK 3 T13: 0.0293 T23: 0.1962 REMARK 3 L TENSOR REMARK 3 L11: 0.4952 L22: 0.7948 REMARK 3 L33: 0.4450 L12: 0.5300 REMARK 3 L13: 0.1658 L23: -0.0857 REMARK 3 S TENSOR REMARK 3 S11: -0.0843 S12: -0.3503 S13: -0.0807 REMARK 3 S21: 0.6266 S22: -0.2859 S23: 0.1390 REMARK 3 S31: 0.4018 S32: -0.0706 S33: -0.4626 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2495 -24.9268 4.5689 REMARK 3 T TENSOR REMARK 3 T11: 0.4410 T22: 0.2758 REMARK 3 T33: 0.3543 T12: 0.0342 REMARK 3 T13: 0.0759 T23: 0.1099 REMARK 3 L TENSOR REMARK 3 L11: 0.2195 L22: 0.6865 REMARK 3 L33: 0.5049 L12: 0.0554 REMARK 3 L13: 0.3131 L23: 0.0441 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: -0.1531 S13: -0.2125 REMARK 3 S21: 0.3456 S22: -0.0923 S23: -0.1377 REMARK 3 S31: 0.3396 S32: 0.1284 S33: 0.0031 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0939 -18.4573 -6.3712 REMARK 3 T TENSOR REMARK 3 T11: 0.2834 T22: 0.2447 REMARK 3 T33: 0.2890 T12: 0.0376 REMARK 3 T13: 0.0491 T23: 0.0663 REMARK 3 L TENSOR REMARK 3 L11: 0.8077 L22: 0.6844 REMARK 3 L33: 0.5150 L12: 0.1260 REMARK 3 L13: -0.3769 L23: 0.0443 REMARK 3 S TENSOR REMARK 3 S11: -0.0379 S12: -0.0269 S13: -0.0038 REMARK 3 S21: -0.0526 S22: -0.0603 S23: -0.0092 REMARK 3 S31: 0.2351 S32: 0.0673 S33: -0.1050 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3218 -26.6516 -18.9037 REMARK 3 T TENSOR REMARK 3 T11: 0.4409 T22: 0.3463 REMARK 3 T33: 0.3218 T12: 0.0685 REMARK 3 T13: 0.0815 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.1057 L22: 0.2379 REMARK 3 L33: 0.1741 L12: 0.0356 REMARK 3 L13: -0.1601 L23: -0.0883 REMARK 3 S TENSOR REMARK 3 S11: -0.0902 S12: 0.4460 S13: -0.1639 REMARK 3 S21: -0.2985 S22: -0.0962 S23: 0.0299 REMARK 3 S31: 0.2127 S32: -0.1112 S33: -0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7472 -23.1412 9.4622 REMARK 3 T TENSOR REMARK 3 T11: 0.3846 T22: 0.2900 REMARK 3 T33: 0.3202 T12: 0.1025 REMARK 3 T13: 0.0790 T23: 0.1469 REMARK 3 L TENSOR REMARK 3 L11: 0.7172 L22: 0.8581 REMARK 3 L33: 0.0300 L12: -0.1317 REMARK 3 L13: 0.0263 L23: -0.0178 REMARK 3 S TENSOR REMARK 3 S11: -0.1259 S12: -0.3038 S13: -0.2592 REMARK 3 S21: 0.2975 S22: -0.0025 S23: -0.2052 REMARK 3 S31: 0.3909 S32: 0.3303 S33: -0.1957 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200006858. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29620 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 48.913 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.830 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04000 REMARK 200 FOR THE DATA SET : 22.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.92 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48700 REMARK 200 FOR SHELL : 3.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES-BIS-TRIS, 75 MM LITHIUM REMARK 280 CHLORIDE, 1 MM DTT, 0.1 MM SODIUM EDTA, 0.25 MM MEGA 8, 0.7 MM REMARK 280 PEPTIDIC LIGAND, 5 MM RKP117, 15% V/V METHANOL/WATER IN REMARK 280 RESERVOIR, PH 6.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.13350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.06675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.20025 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 GLY A 320 REMARK 465 PRO A 321 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 VAL A 15 CG1 CG2 REMARK 470 LYS A 16 CD CE NZ REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 GLU A 24 OE1 OE2 REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 LYS A 28 CD CE NZ REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 GLU A 31 CD OE1 OE2 REMARK 470 ASN A 36 CG OD1 ND2 REMARK 470 GLN A 39 CG CD OE1 NE2 REMARK 470 ASP A 41 CG OD1 OD2 REMARK 470 ILE A 46 CD1 REMARK 470 LYS A 47 CE NZ REMARK 470 LYS A 61 CE NZ REMARK 470 LYS A 63 CE NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 THR A 65 OG1 CG2 REMARK 470 LYS A 81 CD CE NZ REMARK 470 LYS A 83 CD CE NZ REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 ASN A 90 ND2 REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 ILE A 163 CD1 REMARK 470 GLN A 176 CD OE1 NE2 REMARK 470 LEU A 198 CD1 CD2 REMARK 470 LEU A 211 CD1 REMARK 470 SER A 212 OG REMARK 470 LYS A 213 NZ REMARK 470 LYS A 217 CD CE NZ REMARK 470 GLN A 242 CG CD OE1 NE2 REMARK 470 ILE A 244 CG1 CG2 CD1 REMARK 470 GLN A 245 CG CD OE1 NE2 REMARK 470 LYS A 254 CD CE NZ REMARK 470 VAL A 255 CG1 CG2 REMARK 470 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 266 CE NZ REMARK 470 VAL A 275 CG1 CG2 REMARK 470 LYS A 279 CD CE NZ REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 ASN A 286 CG OD1 ND2 REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 ILE A 303 CD1 REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 ILE A 315 CG1 CG2 CD1 REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 PHE A 318 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 THR A 324 OG1 CG2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 ILE A 335 CG1 CG2 CD1 REMARK 470 ARG A 336 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 337 CG1 CG2 REMARK 470 ILE A 339 CG1 CG2 CD1 REMARK 470 LYS A 345 CD CE NZ REMARK 470 THR A 348 CG2 REMARK 470 GLU A 349 CD OE1 OE2 REMARK 470 THR D 10 OG1 CG2 REMARK 470 ILE D 14 CG1 CG2 CD1 REMARK 470 SER D 16 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 276 HG1 THR A 278 1.51 REMARK 500 OG1 THR D 19 O5 RIP D 101 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 36 63.99 34.79 REMARK 500 ALA A 38 -175.88 -175.95 REMARK 500 ASN A 216 -164.89 -129.16 REMARK 500 LEU A 273 47.24 -85.72 REMARK 500 ARG D 18 47.93 -104.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 9LQ A 402 REMARK 610 RIP D 101 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9LQ A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9LQ A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide RIP D 101 bound REMARK 800 to THR D 19 DBREF 6EMC A 0 350 UNP P25321 KAPCA_CRIGR 1 351 DBREF 6EMC D 8 25 PDB 6EMC 6EMC 8 25 SEQADV 6EMC GLY A -2 UNP P25321 EXPRESSION TAG SEQADV 6EMC HIS A -1 UNP P25321 EXPRESSION TAG SEQRES 1 A 353 GLY HIS MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SEP SEQRES 2 A 353 GLU GLN GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS SEQRES 3 A 353 GLU GLU PHE LEU LYS LYS TRP GLU SER PRO SER GLN ASN SEQRES 4 A 353 THR ALA GLN LEU ASP HIS PHE ASP ARG ILE LYS THR LEU SEQRES 5 A 353 GLY THR GLY SER PHE GLY ARG VAL MET LEU VAL LYS HIS SEQRES 6 A 353 LYS GLU THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP SEQRES 7 A 353 LYS GLN LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR SEQRES 8 A 353 LEU ASN GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO SEQRES 9 A 353 PHE LEU VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER SEQRES 10 A 353 ASN LEU TYR MET VAL MET GLU TYR VAL PRO GLY GLY GLU SEQRES 11 A 353 MET PHE SER HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU SEQRES 12 A 353 PRO HIS ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR SEQRES 13 A 353 PHE GLU TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP SEQRES 14 A 353 LEU LYS PRO GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR SEQRES 15 A 353 ILE GLN VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS SEQRES 16 A 353 GLY ARG THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU SEQRES 17 A 353 ALA PRO GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA SEQRES 18 A 353 VAL ASP TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET SEQRES 19 A 353 ALA ALA GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE SEQRES 20 A 353 GLN ILE TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE SEQRES 21 A 353 PRO SER HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG SEQRES 22 A 353 ASN LEU LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN SEQRES 23 A 353 LEU LYS ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP SEQRES 24 A 353 PHE ALA THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS SEQRES 25 A 353 VAL GLU ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY SEQRES 26 A 353 ASP THR SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE SEQRES 27 A 353 ARG VAL SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE THR SEQRES 28 A 353 GLU PHE SEQRES 1 D 18 THR THR THR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 D 18 ARG ARG ASN ALA ILE MODRES 6EMC SEP A 10 SER MODIFIED RESIDUE MODRES 6EMC SEP A 139 SER MODIFIED RESIDUE MODRES 6EMC TPO A 197 THR MODIFIED RESIDUE MODRES 6EMC SEP A 338 SER MODIFIED RESIDUE HET SEP A 10 14 HET SEP A 139 14 HET TPO A 197 17 HET SEP A 338 14 HET 9LQ A 401 54 HET 9LQ A 402 46 HET RIP D 101 9 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM 9LQ [2-[(4-ISOQUINOLIN-5-YLSULFONYL-1,4-DIAZEPAN-1-YL) HETNAM 2 9LQ METHYL]PHENYL]BORONIC ACID HETNAM RIP RIBOSE(PYRANOSE FORM) HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 3(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 9LQ 2(C21 H24 B N3 O4 S) FORMUL 5 RIP C5 H10 O5 FORMUL 6 HOH *95(H2 O) HELIX 1 AA1 ALA A 4 SER A 32 1 29 HELIX 2 AA2 GLN A 39 ASP A 41 5 3 HELIX 3 AA3 LYS A 76 LEU A 82 1 7 HELIX 4 AA4 GLN A 84 VAL A 98 1 15 HELIX 5 AA5 GLU A 127 GLY A 136 1 10 HELIX 6 AA6 SEP A 139 LEU A 160 1 22 HELIX 7 AA7 LYS A 168 GLU A 170 5 3 HELIX 8 AA8 THR A 201 LEU A 205 5 5 HELIX 9 AA9 ALA A 206 LEU A 211 1 6 HELIX 10 AB1 LYS A 217 GLY A 234 1 18 HELIX 11 AB2 GLN A 242 GLY A 253 1 12 HELIX 12 AB3 SER A 262 LEU A 273 1 12 HELIX 13 AB4 ASP A 276 ARG A 280 5 5 HELIX 14 AB5 VAL A 288 ASN A 293 1 6 HELIX 15 AB6 HIS A 294 ALA A 298 5 5 HELIX 16 AB7 ASP A 301 GLN A 307 1 7 HELIX 17 AB8 THR D 9 ALA D 15 1 7 SHEET 1 AA1 5 PHE A 43 GLY A 52 0 SHEET 2 AA1 5 GLY A 55 HIS A 62 -1 O LEU A 59 N LYS A 47 SHEET 3 AA1 5 HIS A 68 ASP A 75 -1 O ILE A 73 N ARG A 56 SHEET 4 AA1 5 ASN A 115 GLU A 121 -1 O MET A 118 N LYS A 72 SHEET 5 AA1 5 LEU A 106 LYS A 111 -1 N GLU A 107 O VAL A 119 SHEET 1 AA2 2 LEU A 162 ILE A 163 0 SHEET 2 AA2 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AA3 2 LEU A 172 ILE A 174 0 SHEET 2 AA3 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 LINK C GLY A 9 N SEP A 10 1555 1555 1.33 LINK C SEP A 10 N GLU A 11 1555 1555 1.33 LINK C PHE A 138 N SEP A 139 1555 1555 1.33 LINK C SEP A 139 N GLU A 140 1555 1555 1.33 LINK C TRP A 196 N TPO A 197 1555 1555 1.33 LINK C TPO A 197 N LEU A 198 1555 1555 1.33 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.33 LINK OG1 THR D 19 C1 RIP D 101 1555 1555 1.37 SITE 1 AC1 12 THR A 51 GLY A 52 VAL A 57 ALA A 70 SITE 2 AC1 12 LYS A 72 GLU A 121 TYR A 122 VAL A 123 SITE 3 AC1 12 LEU A 173 ASP A 184 PHE A 327 HOH A 505 SITE 1 AC2 6 PHE A 18 ILE A 135 ARG A 137 LEU A 152 SITE 2 AC2 6 TYR A 306 GLN A 307 SITE 1 AC3 1 THR D 19 CRYST1 83.726 83.726 60.267 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011944 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011944 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016593 0.00000