HEADER TRANSCRIPTION 03-OCT-17 6EMO TITLE SOLUTION STRUCTURE OF THE LEDGF/P75 IBD - JPO2 (AA 1-32) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PC4 AND SFRS1-INTERACTING PROTEIN,LEDGF/P75 IBD-JPO2 M1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CLL-ASSOCIATED ANTIGEN KW-7,DENSE FINE SPECKLES 70 KDA COMPND 5 PROTEIN,DFS 70,LENS EPITHELIUM-DERIVED GROWTH FACTOR,TRANSCRIPTIONAL COMPND 6 COACTIVATOR P75/P52; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PSIP1, DFS70, LEDGF, PSIP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-PROTEIN COMPLEX, EPIGENETICS, LEUKEMIA, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 40 AUTHOR V.VEVERKA REVDAT 4 14-JUN-23 6EMO 1 REMARK REVDAT 3 08-MAY-19 6EMO 1 REMARK REVDAT 2 01-AUG-18 6EMO 1 JRNL REVDAT 1 25-JUL-18 6EMO 0 JRNL AUTH S.SHARMA,K.CERMAKOVA,J.DE RIJCK,J.DEMEULEMEESTER,M.FABRY, JRNL AUTH 2 S.EL ASHKAR,S.VAN BELLE,M.LEPSIK,P.TESINA,V.DUCHOSLAV, JRNL AUTH 3 P.NOVAK,M.HUBALEK,P.SRB,F.CHRIST,P.REZACOVA,H.C.HODGES, JRNL AUTH 4 Z.DEBYSER,V.VEVERKA JRNL TITL AFFINITY SWITCHING OF THE LEDGF/P75 IBD INTERACTOME IS JRNL TITL 2 GOVERNED BY KINASE-DEPENDENT PHOSPHORYLATION. JRNL REF PROC. NATL. ACAD. SCI. V. 115 E7053 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29997176 JRNL DOI 10.1073/PNAS.1803909115 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EMO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200006766. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : ARBITRARY PA REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] LEDGF/P75 REMARK 210 IBD-JPO2 M1, 50 MM TRIS, 150 MM REMARK 210 SODIUM CHLORIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HMQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HN(CA)CO; 3D HBHA(CO)NH; REMARK 210 3D HCCH-TOCSY; 3D C(CO)NH; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 40 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 9 ARG A 351 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 13 ARG A 405 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 14 ARG A 405 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 15 ARG A 405 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 18 ARG A 372 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 19 ARG A 372 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 22 ARG A 480 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 33 ARG A 405 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 36 ARG A 354 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 38 ARG A 405 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 363 50.47 -109.11 REMARK 500 1 THR A 437 -131.67 -110.14 REMARK 500 2 SER A 347 28.00 47.16 REMARK 500 2 LEU A 363 50.36 -108.95 REMARK 500 2 ASP A 433 13.86 59.81 REMARK 500 2 ALA A 454 93.99 60.35 REMARK 500 3 ALA A 341 30.27 -94.55 REMARK 500 3 LEU A 363 50.42 -109.59 REMARK 500 3 ASP A 433 -128.07 51.60 REMARK 500 3 GLN A 438 47.65 -78.47 REMARK 500 3 LYS A 442 3.28 -152.48 REMARK 500 3 ALA A 454 71.40 -111.09 REMARK 500 3 GLN A 458 88.84 70.90 REMARK 500 3 ASP A 473 37.15 -95.85 REMARK 500 4 LEU A 363 50.33 -109.66 REMARK 500 4 VAL A 429 62.91 33.33 REMARK 500 4 GLU A 431 68.16 10.07 REMARK 500 4 LEU A 453 -30.77 58.61 REMARK 500 4 ARG A 456 -157.10 59.71 REMARK 500 5 TRP A 344 -65.94 64.29 REMARK 500 5 LEU A 363 50.43 -108.34 REMARK 500 5 GLU A 431 -6.67 50.78 REMARK 500 5 ASP A 433 40.26 39.70 REMARK 500 5 GLN A 438 43.83 -78.72 REMARK 500 5 VAL A 439 71.83 37.94 REMARK 500 5 ARG A 456 -165.64 60.13 REMARK 500 6 LEU A 363 50.05 -110.56 REMARK 500 6 VAL A 429 -7.92 47.89 REMARK 500 6 LYS A 442 -136.37 55.12 REMARK 500 6 ARG A 480 -71.27 -107.57 REMARK 500 6 ASP A 481 20.16 -145.49 REMARK 500 7 ALA A 341 58.51 -115.47 REMARK 500 7 SER A 343 22.45 -145.23 REMARK 500 7 LEU A 363 50.33 -108.79 REMARK 500 7 VAL A 429 41.59 31.92 REMARK 500 7 SER A 434 29.09 -140.89 REMARK 500 7 THR A 437 -78.10 -95.56 REMARK 500 7 ALA A 454 93.84 62.77 REMARK 500 7 ASP A 472 39.55 -91.52 REMARK 500 7 ASP A 481 47.78 -86.72 REMARK 500 8 ALA A 342 19.76 53.02 REMARK 500 8 TRP A 344 -67.58 -162.72 REMARK 500 8 LEU A 363 49.95 -107.41 REMARK 500 8 VAL A 429 58.17 37.31 REMARK 500 8 GLU A 431 -6.27 54.26 REMARK 500 8 LYS A 442 -166.74 71.39 REMARK 500 8 GLN A 458 91.16 68.54 REMARK 500 8 ARG A 480 -74.75 -100.07 REMARK 500 9 ALA A 342 -169.13 61.92 REMARK 500 9 TRP A 344 -114.57 -115.66 REMARK 500 REMARK 500 THIS ENTRY HAS 260 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34179 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE LEDGF/P75 IBD - JPO2 (AA 1-32) COMPLEX DBREF 6EMO A 345 442 UNP O75475 PSIP1_HUMAN 345 442 DBREF 6EMO A 451 482 UNP Q96GN5 CDA7L_HUMAN 1 32 SEQADV 6EMO SER A 339 UNP O75475 EXPRESSION TAG SEQADV 6EMO ASN A 340 UNP O75475 EXPRESSION TAG SEQADV 6EMO ALA A 341 UNP O75475 EXPRESSION TAG SEQADV 6EMO ALA A 342 UNP O75475 EXPRESSION TAG SEQADV 6EMO SER A 343 UNP O75475 EXPRESSION TAG SEQADV 6EMO TRP A 344 UNP O75475 EXPRESSION TAG SEQRES 1 A 136 SER ASN ALA ALA SER TRP GLU THR SER MET ASP SER ARG SEQRES 2 A 136 LEU GLN ARG ILE HIS ALA GLU ILE LYS ASN SER LEU LYS SEQRES 3 A 136 ILE ASP ASN LEU ASP VAL ASN ARG CYS ILE GLU ALA LEU SEQRES 4 A 136 ASP GLU LEU ALA SER LEU GLN VAL THR MET GLN GLN ALA SEQRES 5 A 136 GLN LYS HIS THR GLU MET ILE THR THR LEU LYS LYS ILE SEQRES 6 A 136 ARG ARG PHE LYS VAL SER GLN VAL ILE MET GLU LYS SER SEQRES 7 A 136 THR MET LEU TYR ASN LYS PHE LYS ASN MET PHE LEU VAL SEQRES 8 A 136 GLY GLU GLY ASP SER VAL ILE THR GLN VAL LEU ASN LYS SEQRES 9 A 136 MET GLU LEU ALA THR ARG TYR GLN ILE PRO LYS GLU VAL SEQRES 10 A 136 ALA ASP ILE PHE ASN ALA PRO SER ASP ASP GLU GLU PHE SEQRES 11 A 136 VAL GLY PHE ARG ASP ASP HELIX 1 AA1 SER A 347 LEU A 363 1 17 HELIX 2 AA2 ASP A 369 LEU A 383 1 15 HELIX 3 AA3 THR A 386 HIS A 393 1 8 HELIX 4 AA4 HIS A 393 ARG A 404 1 12 HELIX 5 AA5 SER A 409 VAL A 429 1 21 HELIX 6 AA6 PRO A 460 ALA A 469 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1