HEADER TRANSCRIPTION 03-OCT-17 6EMP TITLE SOLUTION STRUCTURE OF THE LEDGF/P75 IBD - POGZ (AA 1370-1404) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PC4 AND SFRS1-INTERACTING PROTEIN,POGO TRANSPOSABLE ELEMENT COMPND 3 WITH ZNF DOMAIN; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: CLL-ASSOCIATED ANTIGEN KW-7,DENSE FINE SPECKLES 70 KDA COMPND 6 PROTEIN,DFS 70,LENS EPITHELIUM-DERIVED GROWTH FACTOR,TRANSCRIPTIONAL COMPND 7 COACTIVATOR P75/P52,SUPPRESSOR OF HAIRY WING HOMOLOG 5,ZINC FINGER COMPND 8 PROTEIN 280E,ZINC FINGER PROTEIN 635; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PSIP1, DFS70, LEDGF, PSIP2, POGZ, KIAA0461, SUHW5, ZNF280E, SOURCE 6 ZNF635, NBLA00003; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-PROTEIN COMPLEX, EPIGENETICS, LEUKEMIA, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 40 AUTHOR V.VEVERKA REVDAT 4 14-JUN-23 6EMP 1 REMARK REVDAT 3 08-MAY-19 6EMP 1 REMARK REVDAT 2 01-AUG-18 6EMP 1 JRNL REVDAT 1 25-JUL-18 6EMP 0 JRNL AUTH S.SHARMA,K.CERMAKOVA,J.DE RIJCK,J.DEMEULEMEESTER,M.FABRY, JRNL AUTH 2 S.EL ASHKAR,S.VAN BELLE,M.LEPSIK,P.TESINA,V.DUCHOSLAV, JRNL AUTH 3 P.NOVAK,M.HUBALEK,P.SRB,F.CHRIST,P.REZACOVA,H.C.HODGES, JRNL AUTH 4 Z.DEBYSER,V.VEVERKA JRNL TITL AFFINITY SWITCHING OF THE LEDGF/P75 IBD INTERACTOME IS JRNL TITL 2 GOVERNED BY KINASE-DEPENDENT PHOSPHORYLATION. JRNL REF PROC. NATL. ACAD. SCI. V. 115 E7053 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29997176 JRNL DOI 10.1073/PNAS.1803909115 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : YASARA REMARK 3 AUTHORS : KRIEGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200006829. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : ARBITRATY PA REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] LEDGF/P75 REMARK 210 IBD-POGZ, 50 MM TRIS, 150 MM REMARK 210 SODIUM CHLORIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D HNCO; 3D HCCH REMARK 210 -TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 40 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 ARG A1372 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 17 ARG A1370 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 21 ARG A 405 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 26 ARG A 372 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 27 ARG A1370 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 28 ARG A 405 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 34 ARG A 405 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 35 ARG A 354 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 363 49.03 -107.26 REMARK 500 1 GLN A 384 46.37 -84.23 REMARK 500 1 VAL A 429 36.11 39.83 REMARK 500 1 ILE A 436 56.21 26.67 REMARK 500 1 ASN A 441 -162.33 58.41 REMARK 500 1 ARG A1372 33.90 -86.27 REMARK 500 1 GLU A1376 -62.18 62.28 REMARK 500 1 ALA A1403 -0.66 -148.67 REMARK 500 2 SER A 343 33.56 -77.94 REMARK 500 2 GLN A 384 46.83 -82.69 REMARK 500 2 PHE A 406 95.49 -66.33 REMARK 500 2 ARG A1370 72.33 -175.43 REMARK 500 2 ARG A1372 -50.71 -143.58 REMARK 500 2 SER A1373 -173.87 59.48 REMARK 500 2 GLU A1393 37.91 -78.42 REMARK 500 2 ALA A1403 47.03 -153.56 REMARK 500 3 ASN A 367 62.54 -150.88 REMARK 500 3 PHE A 406 95.87 -69.86 REMARK 500 3 ARG A1370 123.18 71.82 REMARK 500 3 ARG A1372 -126.57 52.41 REMARK 500 4 ALA A 342 -42.34 -151.76 REMARK 500 4 TRP A 344 161.67 70.20 REMARK 500 4 LEU A 363 45.10 -107.85 REMARK 500 4 VAL A 435 -160.48 49.21 REMARK 500 4 VAL A 439 -145.63 -103.67 REMARK 500 4 ARG A1370 72.69 53.78 REMARK 500 4 SER A1373 -84.01 -151.16 REMARK 500 4 SER A1374 70.04 51.99 REMARK 500 4 GLU A1393 173.68 61.62 REMARK 500 5 GLN A 384 48.38 -84.97 REMARK 500 5 PHE A 406 99.33 -69.37 REMARK 500 5 VAL A 429 36.93 39.42 REMARK 500 5 VAL A 439 -59.37 67.98 REMARK 500 5 ASN A 441 17.27 59.64 REMARK 500 5 LYS A 442 44.89 -79.37 REMARK 500 5 ARG A1372 20.92 -157.08 REMARK 500 5 GLU A1402 -157.51 59.68 REMARK 500 6 PHE A 406 94.31 -68.10 REMARK 500 6 VAL A 429 60.64 28.81 REMARK 500 6 ASP A 433 -73.94 -94.55 REMARK 500 6 SER A 434 8.22 -155.66 REMARK 500 6 THR A 437 -5.99 58.45 REMARK 500 6 ASN A 441 50.51 -117.00 REMARK 500 6 ARG A1370 158.33 60.54 REMARK 500 6 GLU A1391 -61.76 -109.80 REMARK 500 6 GLU A1395 -57.50 58.27 REMARK 500 7 ALA A 341 27.58 -145.50 REMARK 500 7 GLN A 384 47.26 -84.63 REMARK 500 7 VAL A 435 154.99 65.25 REMARK 500 7 GLN A 438 166.58 64.27 REMARK 500 REMARK 500 THIS ENTRY HAS 309 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34180 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE LEDGF/P75 IBD - POGZ (AA 1370-1404) REMARK 900 COMPLEX DBREF 6EMP A 345 442 UNP O75475 PSIP1_HUMAN 345 442 DBREF 6EMP A 1370 1404 UNP Q7Z3K3 POGZ_HUMAN 1326 1360 SEQADV 6EMP SER A 339 UNP O75475 EXPRESSION TAG SEQADV 6EMP ASN A 340 UNP O75475 EXPRESSION TAG SEQADV 6EMP ALA A 341 UNP O75475 EXPRESSION TAG SEQADV 6EMP ALA A 342 UNP O75475 EXPRESSION TAG SEQADV 6EMP SER A 343 UNP O75475 EXPRESSION TAG SEQADV 6EMP TRP A 344 UNP O75475 EXPRESSION TAG SEQRES 1 A 139 SER ASN ALA ALA SER TRP GLU THR SER MET ASP SER ARG SEQRES 2 A 139 LEU GLN ARG ILE HIS ALA GLU ILE LYS ASN SER LEU LYS SEQRES 3 A 139 ILE ASP ASN LEU ASP VAL ASN ARG CYS ILE GLU ALA LEU SEQRES 4 A 139 ASP GLU LEU ALA SER LEU GLN VAL THR MET GLN GLN ALA SEQRES 5 A 139 GLN LYS HIS THR GLU MET ILE THR THR LEU LYS LYS ILE SEQRES 6 A 139 ARG ARG PHE LYS VAL SER GLN VAL ILE MET GLU LYS SER SEQRES 7 A 139 THR MET LEU TYR ASN LYS PHE LYS ASN MET PHE LEU VAL SEQRES 8 A 139 GLY GLU GLY ASP SER VAL ILE THR GLN VAL LEU ASN LYS SEQRES 9 A 139 ARG PRO ARG SER SER PRO GLU GLU THR ILE GLU PRO GLU SEQRES 10 A 139 SER LEU HIS GLN LEU PHE GLU GLY GLU SER GLU THR GLU SEQRES 11 A 139 SER PHE TYR GLY PHE GLU GLU ALA ASP HELIX 1 AA1 THR A 346 SER A 362 1 17 HELIX 2 AA2 ASP A 369 LEU A 383 1 15 HELIX 3 AA3 THR A 386 HIS A 393 1 8 HELIX 4 AA4 HIS A 393 ARG A 404 1 12 HELIX 5 AA5 SER A 409 VAL A 429 1 21 HELIX 6 AA6 PRO A 1381 GLU A 1389 1 9 SHEET 1 AA1 2 LEU A 363 LYS A 364 0 SHEET 2 AA1 2 ASN A 367 LEU A 368 -1 O ASN A 367 N LYS A 364 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1