HEADER TRANSCRIPTION 03-OCT-17 6EMR TITLE SOLUTION STRUCTURE OF THE LEDGF/P75 IBD - IWS1 (AA 446-548) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PC4 AND SFRS1-INTERACTING PROTEIN,PROTEIN IWS1 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CLL-ASSOCIATED ANTIGEN KW-7,DENSE FINE SPECKLES 70 KDA COMPND 5 PROTEIN,DFS 70,LENS EPITHELIUM-DERIVED GROWTH FACTOR,TRANSCRIPTIONAL COMPND 6 COACTIVATOR P75/P52,IWS1-LIKE PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PSIP1, DFS70, LEDGF, PSIP2, IWS1, IWS1L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-PROTEIN COMPLEX, EPIGENETICS, LEUKEMIA, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 40 AUTHOR V.VEVERKA REVDAT 4 14-JUN-23 6EMR 1 REMARK REVDAT 3 08-MAY-19 6EMR 1 REMARK REVDAT 2 01-AUG-18 6EMR 1 JRNL REVDAT 1 25-JUL-18 6EMR 0 JRNL AUTH S.SHARMA,K.CERMAKOVA,J.DE RIJCK,J.DEMEULEMEESTER,M.FABRY, JRNL AUTH 2 S.EL ASHKAR,S.VAN BELLE,M.LEPSIK,P.TESINA,V.DUCHOSLAV, JRNL AUTH 3 P.NOVAK,M.HUBALEK,P.SRB,F.CHRIST,P.REZACOVA,H.C.HODGES, JRNL AUTH 4 Z.DEBYSER,V.VEVERKA JRNL TITL AFFINITY SWITCHING OF THE LEDGF/P75 IBD INTERACTOME IS JRNL TITL 2 GOVERNED BY KINASE-DEPENDENT PHOSPHORYLATION. JRNL REF PROC. NATL. ACAD. SCI. V. 115 E7053 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29997176 JRNL DOI 10.1073/PNAS.1803909115 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EMR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200006831. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : ARBITRARY PA REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] LEDGF/P75 REMARK 210 IBD-IWS1, 50 MM TRIS, 150 MM REMARK 210 SODIUM CHLORIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D HNCO; 3D HCCH REMARK 210 -TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 40 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 8 ARG A 405 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 11 ARG A 547 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 15 ARG A 372 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 17 ARG A 405 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 22 ARG A 354 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 27 ARG A 405 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 31 ARG A 372 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 33 ARG A 351 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 33 ARG A 405 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 34 ARG A 372 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 37 ARG A 351 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 37 ARG A 405 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 39 ARG A 351 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 39 ARG A 405 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 40 ARG A 351 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 369 78.02 -102.32 REMARK 500 1 GLN A 384 43.24 -72.02 REMARK 500 1 ASP A 433 -116.00 38.68 REMARK 500 1 THR A 437 50.49 31.42 REMARK 500 1 LYS A 451 76.14 -107.55 REMARK 500 1 SER A 463 38.80 -86.33 REMARK 500 1 ASN A 467 -112.73 -153.62 REMARK 500 1 GLU A 468 -61.45 -109.92 REMARK 500 1 GLU A 498 10.17 -65.49 REMARK 500 1 LYS A 500 -175.73 58.77 REMARK 500 1 LYS A 506 130.05 78.11 REMARK 500 1 SER A 511 6.07 -150.78 REMARK 500 1 MET A 523 -14.62 -141.15 REMARK 500 2 ALA A 341 30.18 -140.23 REMARK 500 2 ALA A 342 -106.02 55.29 REMARK 500 2 HIS A 393 44.07 -140.50 REMARK 500 2 SER A 434 143.32 68.18 REMARK 500 2 ILE A 436 31.60 -92.05 REMARK 500 2 ASN A 441 37.01 -145.90 REMARK 500 2 LYS A 442 78.91 -109.49 REMARK 500 2 GLU A 499 88.36 51.20 REMARK 500 3 GLN A 384 44.03 -75.87 REMARK 500 3 PHE A 406 94.12 -68.19 REMARK 500 3 ILE A 436 -72.88 -57.97 REMARK 500 3 THR A 437 99.72 -164.60 REMARK 500 3 GLU A 455 55.42 -154.91 REMARK 500 3 LYS A 456 34.09 -79.28 REMARK 500 3 PHE A 459 110.11 -34.75 REMARK 500 3 GLU A 486 -130.21 -83.94 REMARK 500 3 GLU A 497 54.70 -108.34 REMARK 500 3 LYS A 506 134.45 67.54 REMARK 500 3 SER A 511 -41.02 -163.39 REMARK 500 3 LYS A 518 77.04 62.23 REMARK 500 3 SER A 527 -68.39 -146.78 REMARK 500 4 ALA A 341 -158.90 66.43 REMARK 500 4 LEU A 363 30.01 -92.43 REMARK 500 4 ASN A 367 -33.69 -143.31 REMARK 500 4 LEU A 368 74.58 51.21 REMARK 500 4 GLN A 384 43.74 -77.71 REMARK 500 4 HIS A 393 42.17 -105.31 REMARK 500 4 PHE A 406 96.74 -63.54 REMARK 500 4 THR A 437 103.26 -36.29 REMARK 500 4 VAL A 439 49.80 -81.29 REMARK 500 4 ASN A 441 179.42 67.16 REMARK 500 4 LYS A 442 158.31 69.37 REMARK 500 4 GLU A 455 41.84 -101.71 REMARK 500 4 ASP A 457 46.53 -76.01 REMARK 500 4 SER A 463 160.49 69.10 REMARK 500 4 GLU A 464 9.25 56.68 REMARK 500 4 GLU A 479 -109.18 54.79 REMARK 500 REMARK 500 THIS ENTRY HAS 538 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34182 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE LEDGF/P75 IBD - IWS1 (AA 446-548) COMPLEX DBREF 6EMR A 345 441 UNP O75475 PSIP1_HUMAN 345 441 DBREF 6EMR A 442 548 UNP Q96ST2 IWS1_HUMAN 239 341 SEQADV 6EMR SER A 339 UNP O75475 EXPRESSION TAG SEQADV 6EMR ASN A 340 UNP O75475 EXPRESSION TAG SEQADV 6EMR ALA A 341 UNP O75475 EXPRESSION TAG SEQADV 6EMR ALA A 342 UNP O75475 EXPRESSION TAG SEQADV 6EMR SER A 343 UNP O75475 EXPRESSION TAG SEQADV 6EMR TRP A 344 UNP O75475 EXPRESSION TAG SEQRES 1 A 206 SER ASN ALA ALA SER TRP GLU THR SER MET ASP SER ARG SEQRES 2 A 206 LEU GLN ARG ILE HIS ALA GLU ILE LYS ASN SER LEU LYS SEQRES 3 A 206 ILE ASP ASN LEU ASP VAL ASN ARG CYS ILE GLU ALA LEU SEQRES 4 A 206 ASP GLU LEU ALA SER LEU GLN VAL THR MET GLN GLN ALA SEQRES 5 A 206 GLN LYS HIS THR GLU MET ILE THR THR LEU LYS LYS ILE SEQRES 6 A 206 ARG ARG PHE LYS VAL SER GLN VAL ILE MET GLU LYS SER SEQRES 7 A 206 THR MET LEU TYR ASN LYS PHE LYS ASN MET PHE LEU VAL SEQRES 8 A 206 GLY GLU GLY ASP SER VAL ILE THR GLN VAL LEU ASN LYS SEQRES 9 A 206 GLU LEU SER ASP LYS LYS ASN GLU GLU LYS ASP LEU PHE SEQRES 10 A 206 GLY SER ASP SER GLU SER GLY ASN GLU GLU GLU ASN LEU SEQRES 11 A 206 ILE ALA ASP ILE PHE GLY GLU SER GLY ASP GLU GLU GLU SEQRES 12 A 206 GLU GLU PHE THR GLY PHE ASN GLN GLU ASP LEU GLU GLU SEQRES 13 A 206 GLU LYS GLY GLU THR GLN VAL LYS GLU ALA GLU ASP SER SEQRES 14 A 206 ASP SER ASP ASP ASN ILE LYS ARG GLY LYS HIS MET ASP SEQRES 15 A 206 PHE LEU SER ASP PHE GLU MET MET LEU GLN ARG LYS LYS SEQRES 16 A 206 SER MET SER GLY LYS ARG ARG ARG ASN ARG ASP HELIX 1 AA1 SER A 347 SER A 362 1 16 HELIX 2 AA2 ASP A 369 LEU A 383 1 15 HELIX 3 AA3 THR A 386 GLN A 391 1 6 HELIX 4 AA4 HIS A 393 ARG A 404 1 12 HELIX 5 AA5 SER A 409 LEU A 428 1 20 HELIX 6 AA6 GLU A 468 PHE A 477 1 10 HELIX 7 AA7 GLY A 481 GLU A 485 5 5 HELIX 8 AA8 ASN A 492 LEU A 496 5 5 HELIX 9 AA9 SER A 511 ASN A 516 1 6 HELIX 10 AB1 SER A 527 SER A 540 1 14 SHEET 1 AA1 2 LEU A 363 LYS A 364 0 SHEET 2 AA1 2 ASN A 367 LEU A 368 -1 O ASN A 367 N LYS A 364 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1