HEADER RNA BINDING PROTEIN 03-OCT-17 6EMT TITLE CRYSTAL STRUCTURE OF DUAL SPECIFIC TRM10 CONSTRUCT FROM THERMOCOCCUS TITLE 2 KODAKARAENSIS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE(9)-/ADENINE(9)-N1)-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRNA(M1G9/M1A9)-METHYLTRANSFERASE,TRNA(M1G9/M1A9)MTASE; COMPND 5 EC: 2.1.1.218,2.1.1.221; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_COMMON: PYROCOCCUS KODAKARAENSIS; SOURCE 4 ORGANISM_TAXID: 311400; SOURCE 5 GENE: TK0422; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET 28B KEYWDS TRM10, DUAL SPECIFICITY ENZYMES, SPOUT, MTASES, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.K.SINGH,W.VERSEES REVDAT 3 17-JAN-24 6EMT 1 REMARK REVDAT 2 25-JUL-18 6EMT 1 JRNL REVDAT 1 13-JUN-18 6EMT 0 JRNL AUTH R.K.SINGH,A.FELLER,M.ROOVERS,D.VAN ELDER,L.WAUTERS, JRNL AUTH 2 L.DROOGMANS,W.VERSEES JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSIS OF THE DUAL-SPECIFICITY JRNL TITL 2 TRM10 ENZYME FROMTHERMOCOCCUS KODAKARAENSISPROMPTS JRNL TITL 3 RECONSIDERATION OF ITS CATALYTIC MECHANISM. JRNL REF RNA V. 24 1080 2018 JRNL REFN ESSN 1469-9001 JRNL PMID 29848639 JRNL DOI 10.1261/RNA.064345.117 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.363 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 22807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.998 REMARK 3 FREE R VALUE TEST SET COUNT : 1140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6613 - 3.5876 1.00 2968 157 0.1713 0.1837 REMARK 3 2 3.5876 - 2.8477 1.00 2746 144 0.1810 0.1963 REMARK 3 3 2.8477 - 2.4877 1.00 2725 144 0.2066 0.2319 REMARK 3 4 2.4877 - 2.2603 1.00 2682 141 0.2001 0.2146 REMARK 3 5 2.2603 - 2.0983 1.00 2675 141 0.2165 0.2127 REMARK 3 6 2.0983 - 1.9746 1.00 2658 140 0.2162 0.2463 REMARK 3 7 1.9746 - 1.8757 1.00 2628 138 0.2476 0.2888 REMARK 3 8 1.8757 - 1.7940 0.98 2585 135 0.3115 0.3015 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.211 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.732 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1423 REMARK 3 ANGLE : 0.515 1907 REMARK 3 CHIRALITY : 0.044 202 REMARK 3 PLANARITY : 0.002 245 REMARK 3 DIHEDRAL : 13.537 834 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0186 -23.2541 15.3543 REMARK 3 T TENSOR REMARK 3 T11: 0.3432 T22: 0.3715 REMARK 3 T33: 0.3436 T12: 0.0970 REMARK 3 T13: -0.0358 T23: -0.0485 REMARK 3 L TENSOR REMARK 3 L11: 5.8436 L22: 2.3421 REMARK 3 L33: 5.1261 L12: -1.1454 REMARK 3 L13: 2.5299 L23: -1.7172 REMARK 3 S TENSOR REMARK 3 S11: -0.3243 S12: -0.7024 S13: 0.3210 REMARK 3 S21: 0.1991 S22: 0.3203 S23: 0.4348 REMARK 3 S31: 0.3891 S32: -0.5677 S33: -0.1048 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9219 -28.0232 8.3721 REMARK 3 T TENSOR REMARK 3 T11: 0.2170 T22: 0.1781 REMARK 3 T33: 0.2295 T12: 0.0244 REMARK 3 T13: -0.0592 T23: -0.0255 REMARK 3 L TENSOR REMARK 3 L11: 5.5101 L22: 3.3862 REMARK 3 L33: 6.1570 L12: 0.8050 REMARK 3 L13: -2.4805 L23: -2.2464 REMARK 3 S TENSOR REMARK 3 S11: -0.1883 S12: 0.1851 S13: 0.0548 REMARK 3 S21: -0.3199 S22: 0.0318 S23: -0.1273 REMARK 3 S31: 0.3165 S32: 0.1863 S33: 0.1652 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6547 -29.5727 5.8971 REMARK 3 T TENSOR REMARK 3 T11: 0.2749 T22: 0.2811 REMARK 3 T33: 0.2876 T12: -0.0458 REMARK 3 T13: -0.0915 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 3.1092 L22: 4.3343 REMARK 3 L33: 9.1285 L12: -1.8472 REMARK 3 L13: -1.5079 L23: -2.4886 REMARK 3 S TENSOR REMARK 3 S11: -0.1593 S12: 0.1029 S13: -0.1809 REMARK 3 S21: -0.6019 S22: 0.1539 S23: 0.2760 REMARK 3 S31: 0.5195 S32: -0.3542 S33: 0.2545 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4581 -23.8552 8.0658 REMARK 3 T TENSOR REMARK 3 T11: 0.2336 T22: 0.2356 REMARK 3 T33: 0.2159 T12: 0.0231 REMARK 3 T13: -0.0527 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 5.5967 L22: 7.0560 REMARK 3 L33: 4.7949 L12: -1.8214 REMARK 3 L13: 2.5070 L23: -1.1041 REMARK 3 S TENSOR REMARK 3 S11: -0.1059 S12: -0.0362 S13: 0.0961 REMARK 3 S21: -0.1985 S22: 0.0098 S23: 0.3683 REMARK 3 S31: -0.1736 S32: -0.4099 S33: 0.0417 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8542 -11.1576 20.6225 REMARK 3 T TENSOR REMARK 3 T11: 0.6120 T22: 0.4628 REMARK 3 T33: 0.4545 T12: 0.0959 REMARK 3 T13: -0.1906 T23: -0.0529 REMARK 3 L TENSOR REMARK 3 L11: 3.9405 L22: 8.0067 REMARK 3 L33: 3.5029 L12: 4.4464 REMARK 3 L13: -2.2591 L23: -0.1198 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: -0.2128 S13: 1.2283 REMARK 3 S21: 0.1638 S22: -0.2045 S23: 0.4265 REMARK 3 S31: -1.2575 S32: -0.4106 S33: 0.0733 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4629 -15.9908 8.9279 REMARK 3 T TENSOR REMARK 3 T11: 0.4212 T22: 0.2576 REMARK 3 T33: 0.3405 T12: 0.0153 REMARK 3 T13: -0.1065 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 2.8426 L22: 5.7809 REMARK 3 L33: 5.6127 L12: -3.7787 REMARK 3 L13: 2.2344 L23: -1.2592 REMARK 3 S TENSOR REMARK 3 S11: -0.0778 S12: 0.0199 S13: 0.6044 REMARK 3 S21: -0.2948 S22: -0.2651 S23: -0.5279 REMARK 3 S31: -1.0158 S32: 0.1956 S33: 0.3794 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9653 -15.4637 17.0306 REMARK 3 T TENSOR REMARK 3 T11: 0.4165 T22: 0.1965 REMARK 3 T33: 0.4184 T12: 0.0037 REMARK 3 T13: -0.1127 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 3.5730 L22: 2.3759 REMARK 3 L33: 5.9162 L12: 0.6526 REMARK 3 L13: 2.9426 L23: 0.5695 REMARK 3 S TENSOR REMARK 3 S11: -0.2683 S12: 0.0511 S13: 0.6593 REMARK 3 S21: -0.2735 S22: -0.0214 S23: -0.2043 REMARK 3 S31: -0.8673 S32: 0.1823 S33: 0.2563 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 259 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6501 -21.3255 29.2165 REMARK 3 T TENSOR REMARK 3 T11: 0.4129 T22: 0.4310 REMARK 3 T33: 0.3430 T12: 0.0095 REMARK 3 T13: -0.1087 T23: -0.1045 REMARK 3 L TENSOR REMARK 3 L11: 2.1927 L22: 3.7157 REMARK 3 L33: 2.9253 L12: -0.0911 REMARK 3 L13: 2.1232 L23: -0.9132 REMARK 3 S TENSOR REMARK 3 S11: -0.0818 S12: -0.2705 S13: 0.1429 REMARK 3 S21: -0.0703 S22: 0.1036 S23: -0.0122 REMARK 3 S31: 0.5066 S32: -0.2019 S33: 0.0042 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EMT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200006732. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0-6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 2015-10-15 REMARK 200 DATA SCALING SOFTWARE : XDS 2015-10-15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22813 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.794 REMARK 200 RESOLUTION RANGE LOW (A) : 47.645 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 37.90 REMARK 200 R MERGE (I) : 0.09092 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 36.50 REMARK 200 R MERGE FOR SHELL (I) : 2.36100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: SPOUT DOMAIN OF PDB ID 6EMS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG 3350, 8% V/V TASCIMATE, PH REMARK 280 5.0, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.83667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 135.67333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 101.75500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 169.59167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.91833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.83667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 135.67333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 169.59167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 101.75500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.91833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 408 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 96 REMARK 465 THR A 207 REMARK 465 GLY A 208 REMARK 465 GLY A 209 REMARK 465 ASN A 210 REMARK 465 LYS A 211 REMARK 465 LYS A 212 REMARK 465 LYS A 213 REMARK 465 THR A 214 REMARK 465 THR A 215 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 97 CG OD1 OD2 REMARK 470 ASP A 206 OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 134 -129.88 -124.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 311 DBREF 6EMT A 97 272 UNP Q5JD38 TRM10_THEKO 97 272 SEQADV 6EMT MET A -19 UNP Q5JD38 INITIATING METHIONINE SEQADV 6EMT GLY A -18 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMT SER A -17 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMT SER A -16 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMT HIS A -15 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMT HIS A -14 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMT HIS A -13 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMT HIS A -12 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMT HIS A -11 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMT HIS A -10 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMT SER A -9 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMT SER A -8 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMT GLY A -7 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMT LEU A -6 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMT VAL A -5 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMT PRO A -4 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMT ARG A -3 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMT GLY A -2 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMT SER A -1 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMT HIS A 0 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMT MET A 96 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMT ALA A 120 UNP Q5JD38 CYS 120 ENGINEERED MUTATION SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET ASP TRP PRO TYR PHE SEQRES 3 A 197 ILE ILE ASP LEU TYR HIS TRP ASP LYS HIS THR GLN LYS SEQRES 4 A 197 GLU LYS GLY LYS ILE ALA LEU GLN VAL ASN GLN SER TYR SEQRES 5 A 197 GLY LEU LEU ARG ASP TYR PHE THR GLY SER GLU LEU ALA SEQRES 6 A 197 VAL THR TRP ALA ASN GLU GLU PHE ARG GLU MET PHE HIS SEQRES 7 A 197 GLY PRO LEU ASP ARG ILE THR THR TYR GLY GLY PRO THR SEQRES 8 A 197 SER GLU PHE LEU LYS GLU ASN GLY ILE ASN GLU VAL VAL SEQRES 9 A 197 LEU LEU ASP PRO TRP ALA GLU GLU VAL LEU SER GLU LYS SEQRES 10 A 197 ASP PHE ASP VAL LYS ALA PHE ILE ILE GLY GLY ILE VAL SEQRES 11 A 197 ASP THR GLY GLY ASN LYS LYS LYS THR THR PRO LYS ILE SEQRES 12 A 197 GLY GLU GLU LEU GLU SER ALA GLY ILE LYS VAL ARG ARG SEQRES 13 A 197 ARG LYS ILE VAL LEU ARG GLY ASP VAL VAL GLY VAL PRO SEQRES 14 A 197 ASP ARG ILE ASN ARG ILE LEU GLY ILE ILE LEU LYS MET SEQRES 15 A 197 MET VAL GLU GLY LYS SER MET ASP GLU ALA VAL TYR GLU SEQRES 16 A 197 MET GLN HET ACT A 301 4 HET ACT A 302 4 HET ACT A 303 4 HET ACT A 304 4 HET ACT A 305 4 HET ACT A 306 4 HET ACT A 307 4 HET ACT A 308 4 HET GOL A 309 6 HET GOL A 310 6 HET TRS A 311 8 HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 2 ACT 8(C2 H3 O2 1-) FORMUL 10 GOL 2(C3 H8 O3) FORMUL 12 TRS C4 H12 N O3 1+ FORMUL 13 HOH *113(H2 O) HELIX 1 AA1 HIS A 107 HIS A 111 5 5 HELIX 2 AA2 THR A 112 PHE A 134 1 23 HELIX 3 AA3 ASN A 145 GLU A 150 1 6 HELIX 4 AA4 PRO A 165 ASN A 173 1 9 HELIX 5 AA5 SER A 190 PHE A 194 5 5 HELIX 6 AA6 LYS A 217 ALA A 225 1 9 HELIX 7 AA7 ARG A 246 VAL A 259 1 14 HELIX 8 AA8 SER A 263 MET A 271 1 9 SHEET 1 AA1 7 THR A 160 THR A 161 0 SHEET 2 AA1 7 LEU A 139 THR A 142 1 N LEU A 139 O THR A 160 SHEET 3 AA1 7 TYR A 100 ASP A 104 1 N ILE A 103 O ALA A 140 SHEET 4 AA1 7 ALA A 198 GLY A 202 1 O PHE A 199 N ILE A 102 SHEET 5 AA1 7 GLU A 177 LEU A 181 1 N VAL A 179 O ILE A 200 SHEET 6 AA1 7 LYS A 228 LYS A 233 1 O ARG A 230 N VAL A 178 SHEET 7 AA1 7 GLU A 187 VAL A 188 1 N GLU A 187 O LYS A 233 SITE 1 AC1 4 ARG A 131 PRO A 155 ASP A 157 ARG A 158 SITE 1 AC2 1 TRP A 98 SITE 1 AC3 5 LEU A 121 ASN A 124 ASP A 132 MET A 151 SITE 2 AC3 5 HIS A 153 SITE 1 AC4 3 GLY A 163 ARG A 237 HOH A 472 SITE 1 AC5 3 GLU A 168 GLU A 270 HOH A 425 SITE 1 AC6 2 PHE A 152 GLY A 154 SITE 1 AC7 5 SER A 137 ASP A 157 ILE A 159 THR A 160 SITE 2 AC7 5 HOH A 459 SITE 1 AC8 4 LYS A 228 VAL A 229 ARG A 232 HOH A 434 SITE 1 AC9 3 THR A 161 GLU A 172 ASN A 173 SITE 1 AD1 8 ASP A 104 TYR A 106 TRP A 143 PRO A 165 SITE 2 AD1 8 THR A 166 SER A 167 ILE A 218 HOH A 410 SITE 1 AD2 5 GLN A 122 GLN A 125 ARG A 246 ASN A 248 SITE 2 AD2 5 ARG A 249 CRYST1 62.262 62.262 203.510 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016061 0.009273 0.000000 0.00000 SCALE2 0.000000 0.018546 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004914 0.00000