HEADER ISOMERASE 04-OCT-17 6ENG TITLE CRYSTAL STRUCTURE OF THE 43K ATPASE DOMAIN OF ESCHERICHIA COLI GYRASE TITLE 2 B IN COMPLEX WITH AN AMINOCOUMARIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TYPE IIA TOPOISOMERASE SUBUNIT GYRB; COMPND 5 EC: 5.99.1.3; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: FRAGMENT: 43K ATPASE DOMAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: GYRB, ACRB, COU, HIMB, HISU, NALC, PARA, PCBA, B3699, JW5625; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TOPOISOMERASE, GYRASE B-AMINOCOUMARIN COMPLEX, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.VANDEN BROECK,A.G.MCEWEN,V.LAMOUR REVDAT 3 17-JAN-24 6ENG 1 LINK REVDAT 2 08-MAY-19 6ENG 1 JRNL REVDAT 1 10-APR-19 6ENG 0 JRNL AUTH A.VANDEN BROECK,A.G.MCEWEN,Y.CHEBARO,N.POTIER,V.LAMOUR JRNL TITL STRUCTURAL BASIS FOR DNA GYRASE INTERACTION WITH COUMERMYCIN JRNL TITL 2 A1. JRNL REF J.MED.CHEM. V. 62 4225 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 30920824 JRNL DOI 10.1021/ACS.JMEDCHEM.8B01928 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 43589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2180 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.36 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.14 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2601 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2508 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2471 REMARK 3 BIN R VALUE (WORKING SET) : 0.2497 REMARK 3 BIN FREE R VALUE : 0.2689 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 130 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5821 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 16.26420 REMARK 3 B22 (A**2) : -1.53110 REMARK 3 B33 (A**2) : -14.73310 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.341 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.294 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.231 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.276 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.228 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6130 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8306 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2203 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 164 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 959 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6130 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 791 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7102 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.17 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.83 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.88 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 25 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|12 - A|31 } REMARK 3 ORIGIN FOR THE GROUP (A): -7.3216 23.2210 2.3613 REMARK 3 T TENSOR REMARK 3 T11: -0.0736 T22: 0.0547 REMARK 3 T33: 0.0628 T12: -0.0035 REMARK 3 T13: 0.0493 T23: -0.0760 REMARK 3 L TENSOR REMARK 3 L11: 2.5680 L22: 3.4281 REMARK 3 L33: 2.9072 L12: 1.5221 REMARK 3 L13: -2.8184 L23: 2.1641 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: -0.0397 S13: 0.2866 REMARK 3 S21: -0.0066 S22: 0.1053 S23: 0.0965 REMARK 3 S31: -0.2443 S32: 0.0588 S33: -0.1283 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|32 - A|77 } REMARK 3 ORIGIN FOR THE GROUP (A): 0.4853 8.0796 -8.4818 REMARK 3 T TENSOR REMARK 3 T11: -0.1454 T22: 0.0485 REMARK 3 T33: 0.0043 T12: -0.0283 REMARK 3 T13: 0.0459 T23: 0.0424 REMARK 3 L TENSOR REMARK 3 L11: 3.0975 L22: 3.9347 REMARK 3 L33: 3.0846 L12: 0.6411 REMARK 3 L13: 2.1398 L23: 0.0567 REMARK 3 S TENSOR REMARK 3 S11: -0.0357 S12: -0.0669 S13: -0.0184 REMARK 3 S21: -0.2865 S22: 0.0877 S23: -0.2483 REMARK 3 S31: -0.1420 S32: -0.0539 S33: -0.0519 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|78 - A|127 } REMARK 3 ORIGIN FOR THE GROUP (A): -9.4597 18.9690 -11.8420 REMARK 3 T TENSOR REMARK 3 T11: -0.1567 T22: 0.0883 REMARK 3 T33: 0.0630 T12: 0.0039 REMARK 3 T13: -0.0342 T23: 0.0851 REMARK 3 L TENSOR REMARK 3 L11: 0.3235 L22: 4.1705 REMARK 3 L33: 0.8227 L12: 0.3934 REMARK 3 L13: -0.2739 L23: -0.1678 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: 0.1357 S13: 0.3612 REMARK 3 S21: -0.1265 S22: 0.1549 S23: 0.5196 REMARK 3 S31: -0.3243 S32: -0.1545 S33: -0.1236 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|128 - A|178 } REMARK 3 ORIGIN FOR THE GROUP (A): 4.6313 19.5900 -13.2318 REMARK 3 T TENSOR REMARK 3 T11: -0.1714 T22: -0.0966 REMARK 3 T33: -0.0078 T12: -0.1100 REMARK 3 T13: 0.0386 T23: 0.0882 REMARK 3 L TENSOR REMARK 3 L11: 5.1296 L22: 4.4306 REMARK 3 L33: 0.4149 L12: -0.0289 REMARK 3 L13: 0.0085 L23: -1.4216 REMARK 3 S TENSOR REMARK 3 S11: -0.2468 S12: 0.4495 S13: 0.5337 REMARK 3 S21: -0.4543 S22: 0.1461 S23: -0.5403 REMARK 3 S31: -0.3856 S32: 0.3708 S33: 0.1008 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|179 - A|219 } REMARK 3 ORIGIN FOR THE GROUP (A): 5.0059 0.1470 -4.2675 REMARK 3 T TENSOR REMARK 3 T11: -0.2119 T22: 0.0547 REMARK 3 T33: 0.0393 T12: 0.0496 REMARK 3 T13: 0.0554 T23: 0.0758 REMARK 3 L TENSOR REMARK 3 L11: 1.1716 L22: 5.6464 REMARK 3 L33: 2.3779 L12: -1.3777 REMARK 3 L13: -1.3719 L23: -0.6611 REMARK 3 S TENSOR REMARK 3 S11: -0.0957 S12: -0.1119 S13: 0.0525 REMARK 3 S21: 0.0570 S22: -0.1381 S23: -0.5426 REMARK 3 S31: 0.1030 S32: -0.0682 S33: 0.2338 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|220 - A|260 } REMARK 3 ORIGIN FOR THE GROUP (A): -8.9082 -15.6070 -2.4790 REMARK 3 T TENSOR REMARK 3 T11: -0.1145 T22: -0.0357 REMARK 3 T33: -0.0800 T12: 0.0076 REMARK 3 T13: 0.0145 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 4.6299 L22: 4.2584 REMARK 3 L33: 7.2838 L12: 2.6016 REMARK 3 L13: 2.6735 L23: -0.5254 REMARK 3 S TENSOR REMARK 3 S11: -0.0514 S12: -0.0759 S13: 0.1139 REMARK 3 S21: -0.0037 S22: 0.1172 S23: -0.1853 REMARK 3 S31: 0.5306 S32: 0.1651 S33: -0.0658 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|261 - A|276 } REMARK 3 ORIGIN FOR THE GROUP (A): -11.6476 -6.5268 4.7519 REMARK 3 T TENSOR REMARK 3 T11: -0.1609 T22: 0.0734 REMARK 3 T33: 0.0194 T12: -0.0079 REMARK 3 T13: 0.0495 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 0.0350 L22: 4.0999 REMARK 3 L33: 1.2197 L12: 0.5578 REMARK 3 L13: 0.0302 L23: 0.6279 REMARK 3 S TENSOR REMARK 3 S11: 0.1496 S12: -0.1837 S13: 0.4993 REMARK 3 S21: 0.2297 S22: -0.1871 S23: 0.0834 REMARK 3 S31: 0.1194 S32: -0.2154 S33: 0.0375 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { A|277 - A|304 } REMARK 3 ORIGIN FOR THE GROUP (A): -23.2170 -20.1097 2.9084 REMARK 3 T TENSOR REMARK 3 T11: -0.0042 T22: -0.0759 REMARK 3 T33: 0.1434 T12: -0.1520 REMARK 3 T13: -0.0012 T23: 0.0792 REMARK 3 L TENSOR REMARK 3 L11: 0.9710 L22: 1.6165 REMARK 3 L33: 0.5410 L12: 2.7443 REMARK 3 L13: -0.8015 L23: 0.0831 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: 0.0181 S13: 0.1260 REMARK 3 S21: 0.2702 S22: 0.0812 S23: 0.0825 REMARK 3 S31: 0.5400 S32: -0.5334 S33: -0.0842 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { A|315 - A|328 } REMARK 3 ORIGIN FOR THE GROUP (A): -14.5288 -10.5955 1.1911 REMARK 3 T TENSOR REMARK 3 T11: -0.1718 T22: -0.0554 REMARK 3 T33: 0.0755 T12: -0.0697 REMARK 3 T13: 0.0108 T23: -0.0702 REMARK 3 L TENSOR REMARK 3 L11: 5.0210 L22: 1.5560 REMARK 3 L33: 2.7659 L12: -0.7358 REMARK 3 L13: -0.7346 L23: -0.1730 REMARK 3 S TENSOR REMARK 3 S11: 0.0205 S12: -0.0076 S13: 0.1550 REMARK 3 S21: 0.2792 S22: -0.0693 S23: 0.1018 REMARK 3 S31: 0.2589 S32: -0.0753 S33: 0.0488 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { A|329 - A|341 } REMARK 3 ORIGIN FOR THE GROUP (A): -20.1240 5.1434 1.4734 REMARK 3 T TENSOR REMARK 3 T11: -0.1822 T22: 0.0360 REMARK 3 T33: 0.2848 T12: 0.0231 REMARK 3 T13: 0.0375 T23: 0.1010 REMARK 3 L TENSOR REMARK 3 L11: 1.8462 L22: 2.6082 REMARK 3 L33: 1.0986 L12: -2.8490 REMARK 3 L13: -0.7777 L23: 0.2077 REMARK 3 S TENSOR REMARK 3 S11: 0.0609 S12: -0.0374 S13: 0.0926 REMARK 3 S21: -0.0049 S22: -0.0730 S23: 0.2208 REMARK 3 S31: -0.1736 S32: -0.1101 S33: 0.0121 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: { A|342 - A|364 } REMARK 3 ORIGIN FOR THE GROUP (A): -21.4562 -16.5632 -5.8636 REMARK 3 T TENSOR REMARK 3 T11: -0.1225 T22: 0.0127 REMARK 3 T33: -0.0315 T12: -0.1520 REMARK 3 T13: -0.1037 T23: 0.1103 REMARK 3 L TENSOR REMARK 3 L11: 3.4405 L22: 0.0512 REMARK 3 L33: 3.4084 L12: -0.2063 REMARK 3 L13: 0.1180 L23: -0.9572 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: 0.2738 S13: 0.3414 REMARK 3 S21: -0.2113 S22: 0.1448 S23: 0.2496 REMARK 3 S31: 0.5433 S32: -0.5368 S33: -0.1314 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: { A|365 - A|392 } REMARK 3 ORIGIN FOR THE GROUP (A): -17.3357 -27.7865 16.4587 REMARK 3 T TENSOR REMARK 3 T11: -0.0689 T22: 0.0062 REMARK 3 T33: 0.0281 T12: -0.1516 REMARK 3 T13: -0.1207 T23: 0.0584 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.5720 REMARK 3 L33: 0.1438 L12: -0.2840 REMARK 3 L13: 1.0443 L23: -2.9079 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: -0.2647 S13: -0.0164 REMARK 3 S21: -0.0456 S22: 0.0706 S23: 0.0681 REMARK 3 S31: 0.0426 S32: -0.0665 S33: -0.0561 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: { B|15 - B|31 } REMARK 3 ORIGIN FOR THE GROUP (A): -17.4491 24.3115 -57.7791 REMARK 3 T TENSOR REMARK 3 T11: -0.0490 T22: 0.3028 REMARK 3 T33: -0.2888 T12: -0.1520 REMARK 3 T13: 0.0319 T23: 0.1319 REMARK 3 L TENSOR REMARK 3 L11: 1.0860 L22: 2.8216 REMARK 3 L33: 2.1293 L12: 1.5618 REMARK 3 L13: -2.8762 L23: -0.6026 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: 0.1283 S13: 0.1209 REMARK 3 S21: -0.0626 S22: -0.0433 S23: -0.0028 REMARK 3 S31: -0.1682 S32: 0.0006 S33: 0.0263 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: { B|32 - B|77 } REMARK 3 ORIGIN FOR THE GROUP (A): -24.8595 10.6959 -45.2508 REMARK 3 T TENSOR REMARK 3 T11: -0.2198 T22: 0.1321 REMARK 3 T33: -0.1012 T12: -0.0242 REMARK 3 T13: 0.0582 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 2.3279 L22: 4.0956 REMARK 3 L33: 1.9870 L12: 0.9556 REMARK 3 L13: -2.0170 L23: 2.4457 REMARK 3 S TENSOR REMARK 3 S11: -0.0571 S12: 0.3142 S13: 0.0868 REMARK 3 S21: 0.3376 S22: 0.0649 S23: 0.3125 REMARK 3 S31: -0.0364 S32: 0.5276 S33: -0.0078 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: { B|78 - B|127 } REMARK 3 ORIGIN FOR THE GROUP (A): -14.4861 21.3507 -41.4066 REMARK 3 T TENSOR REMARK 3 T11: -0.2175 T22: 0.2676 REMARK 3 T33: -0.1313 T12: -0.1520 REMARK 3 T13: 0.0803 T23: -0.1009 REMARK 3 L TENSOR REMARK 3 L11: 1.7570 L22: 6.6300 REMARK 3 L33: 0.0470 L12: 2.9104 REMARK 3 L13: 0.6793 L23: -2.6109 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: 0.1197 S13: 0.2064 REMARK 3 S21: -0.0083 S22: 0.1674 S23: -0.3216 REMARK 3 S31: -0.1685 S32: 0.3813 S33: -0.1286 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: { B|128 - B|178 } REMARK 3 ORIGIN FOR THE GROUP (A): -28.5007 22.2913 -40.6733 REMARK 3 T TENSOR REMARK 3 T11: -0.1970 T22: -0.1451 REMARK 3 T33: -0.0130 T12: -0.0731 REMARK 3 T13: 0.0857 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 6.8680 L22: 4.5960 REMARK 3 L33: 2.2253 L12: 0.4671 REMARK 3 L13: 0.9309 L23: 2.1118 REMARK 3 S TENSOR REMARK 3 S11: -0.2387 S12: -0.0649 S13: 0.5255 REMARK 3 S21: 0.2972 S22: 0.1794 S23: 0.5437 REMARK 3 S31: -0.5360 S32: 0.2986 S33: 0.0593 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: { B|179 - B|219 } REMARK 3 ORIGIN FOR THE GROUP (A): -29.1980 2.7016 -49.5582 REMARK 3 T TENSOR REMARK 3 T11: -0.2547 T22: 0.0648 REMARK 3 T33: 0.0119 T12: -0.0236 REMARK 3 T13: 0.0784 T23: -0.0570 REMARK 3 L TENSOR REMARK 3 L11: 2.4296 L22: 6.8130 REMARK 3 L33: 3.1241 L12: -0.0124 REMARK 3 L13: 0.6843 L23: 1.6064 REMARK 3 S TENSOR REMARK 3 S11: -0.0506 S12: 0.0282 S13: 0.0168 REMARK 3 S21: 0.0543 S22: -0.2289 S23: 0.3001 REMARK 3 S31: 0.3153 S32: 0.1656 S33: 0.2795 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: { B|220 - B|260 } REMARK 3 ORIGIN FOR THE GROUP (A): -15.0369 -13.1323 -51.1472 REMARK 3 T TENSOR REMARK 3 T11: -0.1654 T22: 0.0069 REMARK 3 T33: -0.0354 T12: 0.0079 REMARK 3 T13: -0.0133 T23: -0.0370 REMARK 3 L TENSOR REMARK 3 L11: 3.9166 L22: 5.8909 REMARK 3 L33: 3.4147 L12: -0.9850 REMARK 3 L13: -0.4081 L23: 1.7996 REMARK 3 S TENSOR REMARK 3 S11: -0.1019 S12: -0.1001 S13: 0.1713 REMARK 3 S21: 0.2809 S22: 0.1622 S23: -0.1060 REMARK 3 S31: 0.4952 S32: -0.2382 S33: -0.0603 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: { B|261 - B|276 } REMARK 3 ORIGIN FOR THE GROUP (A): -12.3919 -4.0056 -58.4981 REMARK 3 T TENSOR REMARK 3 T11: -0.2194 T22: 0.0778 REMARK 3 T33: 0.1765 T12: -0.0506 REMARK 3 T13: 0.0190 T23: -0.0938 REMARK 3 L TENSOR REMARK 3 L11: 0.0030 L22: 3.1500 REMARK 3 L33: 1.5790 L12: -0.1227 REMARK 3 L13: 0.0673 L23: -2.1478 REMARK 3 S TENSOR REMARK 3 S11: 0.1344 S12: -0.0013 S13: 0.5203 REMARK 3 S21: -0.3220 S22: -0.1203 S23: 0.0999 REMARK 3 S31: 0.2287 S32: 0.1713 S33: -0.0141 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: { B|277 - B|302 } REMARK 3 ORIGIN FOR THE GROUP (A): -0.9281 -16.5207 -56.2758 REMARK 3 T TENSOR REMARK 3 T11: -0.1213 T22: -0.0419 REMARK 3 T33: 0.1520 T12: 0.1426 REMARK 3 T13: -0.0406 T23: -0.1502 REMARK 3 L TENSOR REMARK 3 L11: 2.3676 L22: 0.5140 REMARK 3 L33: 0.0000 L12: -2.3171 REMARK 3 L13: 0.3032 L23: 1.2987 REMARK 3 S TENSOR REMARK 3 S11: 0.1372 S12: -0.3133 S13: 0.2334 REMARK 3 S21: -0.0275 S22: 0.1853 S23: -0.0549 REMARK 3 S31: 0.5275 S32: 0.5307 S33: -0.3225 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: { B|303 - B|316 } REMARK 3 ORIGIN FOR THE GROUP (A): 1.0940 -21.2778 -65.0233 REMARK 3 T TENSOR REMARK 3 T11: -0.1006 T22: 0.1164 REMARK 3 T33: 0.1849 T12: 0.0912 REMARK 3 T13: -0.0388 T23: 0.0522 REMARK 3 L TENSOR REMARK 3 L11: 0.9614 L22: 0.3929 REMARK 3 L33: 0.0000 L12: 0.9158 REMARK 3 L13: -0.6619 L23: -0.0568 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: 0.0431 S13: 0.0075 REMARK 3 S21: 0.0331 S22: 0.0091 S23: -0.0356 REMARK 3 S31: -0.1599 S32: -0.0722 S33: -0.0181 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: { B|317 - B|328 } REMARK 3 ORIGIN FOR THE GROUP (A): -10.1835 -6.6092 -53.2433 REMARK 3 T TENSOR REMARK 3 T11: -0.2974 T22: -0.0352 REMARK 3 T33: 0.0233 T12: 0.0059 REMARK 3 T13: 0.0084 T23: -0.0644 REMARK 3 L TENSOR REMARK 3 L11: 1.1018 L22: 0.5260 REMARK 3 L33: 3.4861 L12: -2.8207 REMARK 3 L13: -1.6929 L23: 0.3336 REMARK 3 S TENSOR REMARK 3 S11: 0.0668 S12: -0.1638 S13: 0.1161 REMARK 3 S21: -0.2154 S22: -0.0512 S23: 0.0626 REMARK 3 S31: 0.0911 S32: 0.1070 S33: -0.0157 REMARK 3 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: { B|329 - B|341 } REMARK 3 ORIGIN FOR THE GROUP (A): -4.4525 7.7391 -55.3861 REMARK 3 T TENSOR REMARK 3 T11: -0.2565 T22: -0.0374 REMARK 3 T33: 0.3005 T12: -0.0473 REMARK 3 T13: -0.0136 T23: -0.1520 REMARK 3 L TENSOR REMARK 3 L11: 1.9790 L22: 2.5573 REMARK 3 L33: 0.0006 L12: 2.8723 REMARK 3 L13: -0.5025 L23: 0.6863 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: 0.0205 S13: 0.0719 REMARK 3 S21: -0.0291 S22: -0.0361 S23: -0.1719 REMARK 3 S31: -0.1462 S32: 0.0815 S33: 0.0083 REMARK 3 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: { B|342 - B|364 } REMARK 3 ORIGIN FOR THE GROUP (A): -2.5214 -13.7321 -47.6421 REMARK 3 T TENSOR REMARK 3 T11: -0.1383 T22: 0.0613 REMARK 3 T33: 0.0177 T12: 0.1467 REMARK 3 T13: -0.1520 T23: -0.1519 REMARK 3 L TENSOR REMARK 3 L11: 2.4233 L22: 0.7225 REMARK 3 L33: 1.0554 L12: -2.8914 REMARK 3 L13: -0.3937 L23: 1.1647 REMARK 3 S TENSOR REMARK 3 S11: -0.0417 S12: -0.2775 S13: 0.2677 REMARK 3 S21: 0.1447 S22: 0.1348 S23: -0.1991 REMARK 3 S31: 0.3973 S32: 0.5353 S33: -0.0930 REMARK 3 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: { B|365 - B|393 } REMARK 3 ORIGIN FOR THE GROUP (A): -6.1431 -24.4741 -71.6326 REMARK 3 T TENSOR REMARK 3 T11: -0.1821 T22: -0.0039 REMARK 3 T33: 0.1312 T12: 0.1520 REMARK 3 T13: 0.0014 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 2.0018 L22: 0.2614 REMARK 3 L33: 1.2347 L12: -1.1148 REMARK 3 L13: 1.3824 L23: 1.2749 REMARK 3 S TENSOR REMARK 3 S11: 0.0700 S12: 0.4138 S13: 0.0337 REMARK 3 S21: 0.1573 S22: -0.1490 S23: -0.2349 REMARK 3 S31: 0.1847 S32: -0.0023 S33: 0.0790 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ENG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200006834. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97779 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43688 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 33.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 6.258 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.23 REMARK 200 R MERGE FOR SHELL (I) : 1.26300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1EI1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3350, 0.2M NAH2PO4, PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.91500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.88000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.03500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.88000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.91500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.03500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 SER A 4 REMARK 465 TYR A 5 REMARK 465 ASP A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 ILE A 10 REMARK 465 LYS A 11 REMARK 465 LYS A 305 REMARK 465 ALA A 306 REMARK 465 LYS A 307 REMARK 465 VAL A 308 REMARK 465 SER A 309 REMARK 465 ALA A 310 REMARK 465 THR A 311 REMARK 465 GLY A 312 REMARK 465 ASP A 313 REMARK 465 ASP A 314 REMARK 465 ARG A 393 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 SER B 4 REMARK 465 TYR B 5 REMARK 465 ASP B 6 REMARK 465 SER B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 ILE B 10 REMARK 465 LYS B 11 REMARK 465 VAL B 12 REMARK 465 LEU B 13 REMARK 465 LYS B 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 HIS B 116 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 393 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 98 -64.02 -29.87 REMARK 500 ASN A 107 105.12 -51.41 REMARK 500 LEU A 115 -51.14 -120.83 REMARK 500 ASN A 178 -66.75 64.59 REMARK 500 ASN A 272 -12.48 72.74 REMARK 500 SER A 342 100.28 -49.89 REMARK 500 ASN B 178 -57.70 69.12 REMARK 500 ASN B 272 -18.63 77.73 REMARK 500 THR B 311 -67.77 -126.66 REMARK 500 SER B 342 95.50 -53.68 REMARK 500 ASN B 364 78.08 -117.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 681 DISTANCE = 5.99 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 406 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 102 O REMARK 620 2 LYS A 103 O 76.6 REMARK 620 3 ASP A 105 O 72.1 85.3 REMARK 620 4 HOH A 543 O 123.7 56.6 74.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 408 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 242 O REMARK 620 2 HOH A 640 O 77.0 REMARK 620 3 HOH A 682 O 84.4 158.9 REMARK 620 4 HOH A 689 O 157.8 82.2 117.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 407 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 271 O REMARK 620 2 HOH A 589 O 98.5 REMARK 620 3 HOH A 599 O 134.8 85.2 REMARK 620 4 HOH A 621 O 92.0 86.5 133.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 274 O REMARK 620 2 THR A 336 O 146.2 REMARK 620 3 LYS A 337 O 70.9 76.4 REMARK 620 4 ASP A 338 OD1 88.8 79.7 84.6 REMARK 620 5 HOH A 695 O 106.8 106.2 176.5 98.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BHW B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 405 DBREF 6ENG A 1 393 UNP P0AES6 GYRB_ECOLI 1 393 DBREF 6ENG B 1 393 UNP P0AES6 GYRB_ECOLI 1 393 SEQADV 6ENG GLY A -2 UNP P0AES6 EXPRESSION TAG SEQADV 6ENG PRO A -1 UNP P0AES6 EXPRESSION TAG SEQADV 6ENG HIS A 0 UNP P0AES6 EXPRESSION TAG SEQADV 6ENG GLY B -2 UNP P0AES6 EXPRESSION TAG SEQADV 6ENG PRO B -1 UNP P0AES6 EXPRESSION TAG SEQADV 6ENG HIS B 0 UNP P0AES6 EXPRESSION TAG SEQRES 1 A 396 GLY PRO HIS MET SER ASN SER TYR ASP SER SER SER ILE SEQRES 2 A 396 LYS VAL LEU LYS GLY LEU ASP ALA VAL ARG LYS ARG PRO SEQRES 3 A 396 GLY MET TYR ILE GLY ASP THR ASP ASP GLY THR GLY LEU SEQRES 4 A 396 HIS HIS MET VAL PHE GLU VAL VAL ASP ASN ALA ILE ASP SEQRES 5 A 396 GLU ALA LEU ALA GLY HIS CYS LYS GLU ILE ILE VAL THR SEQRES 6 A 396 ILE HIS ALA ASP ASN SER VAL SER VAL GLN ASP ASP GLY SEQRES 7 A 396 ARG GLY ILE PRO THR GLY ILE HIS PRO GLU GLU GLY VAL SEQRES 8 A 396 SER ALA ALA GLU VAL ILE MET THR VAL LEU HIS ALA GLY SEQRES 9 A 396 GLY LYS PHE ASP ASP ASN SER TYR LYS VAL SER GLY GLY SEQRES 10 A 396 LEU HIS GLY VAL GLY VAL SER VAL VAL ASN ALA LEU SER SEQRES 11 A 396 GLN LYS LEU GLU LEU VAL ILE GLN ARG GLU GLY LYS ILE SEQRES 12 A 396 HIS ARG GLN ILE TYR GLU HIS GLY VAL PRO GLN ALA PRO SEQRES 13 A 396 LEU ALA VAL THR GLY GLU THR GLU LYS THR GLY THR MET SEQRES 14 A 396 VAL ARG PHE TRP PRO SER LEU GLU THR PHE THR ASN VAL SEQRES 15 A 396 THR GLU PHE GLU TYR GLU ILE LEU ALA LYS ARG LEU ARG SEQRES 16 A 396 GLU LEU SER PHE LEU ASN SER GLY VAL SER ILE ARG LEU SEQRES 17 A 396 ARG ASP LYS ARG ASP GLY LYS GLU ASP HIS PHE HIS TYR SEQRES 18 A 396 GLU GLY GLY ILE LYS ALA PHE VAL GLU TYR LEU ASN LYS SEQRES 19 A 396 ASN LYS THR PRO ILE HIS PRO ASN ILE PHE TYR PHE SER SEQRES 20 A 396 THR GLU LYS ASP GLY ILE GLY VAL GLU VAL ALA LEU GLN SEQRES 21 A 396 TRP ASN ASP GLY PHE GLN GLU ASN ILE TYR CYS PHE THR SEQRES 22 A 396 ASN ASN ILE PRO GLN ARG ASP GLY GLY THR HIS LEU ALA SEQRES 23 A 396 GLY PHE ARG ALA ALA MET THR ARG THR LEU ASN ALA TYR SEQRES 24 A 396 MET ASP LYS GLU GLY TYR SER LYS LYS ALA LYS VAL SER SEQRES 25 A 396 ALA THR GLY ASP ASP ALA ARG GLU GLY LEU ILE ALA VAL SEQRES 26 A 396 VAL SER VAL LYS VAL PRO ASP PRO LYS PHE SER SER GLN SEQRES 27 A 396 THR LYS ASP LYS LEU VAL SER SER GLU VAL LYS SER ALA SEQRES 28 A 396 VAL GLU GLN GLN MET ASN GLU LEU LEU ALA GLU TYR LEU SEQRES 29 A 396 LEU GLU ASN PRO THR ASP ALA LYS ILE VAL VAL GLY LYS SEQRES 30 A 396 ILE ILE ASP ALA ALA ARG ALA ARG GLU ALA ALA ARG ARG SEQRES 31 A 396 ALA ARG GLU MET THR ARG SEQRES 1 B 396 GLY PRO HIS MET SER ASN SER TYR ASP SER SER SER ILE SEQRES 2 B 396 LYS VAL LEU LYS GLY LEU ASP ALA VAL ARG LYS ARG PRO SEQRES 3 B 396 GLY MET TYR ILE GLY ASP THR ASP ASP GLY THR GLY LEU SEQRES 4 B 396 HIS HIS MET VAL PHE GLU VAL VAL ASP ASN ALA ILE ASP SEQRES 5 B 396 GLU ALA LEU ALA GLY HIS CYS LYS GLU ILE ILE VAL THR SEQRES 6 B 396 ILE HIS ALA ASP ASN SER VAL SER VAL GLN ASP ASP GLY SEQRES 7 B 396 ARG GLY ILE PRO THR GLY ILE HIS PRO GLU GLU GLY VAL SEQRES 8 B 396 SER ALA ALA GLU VAL ILE MET THR VAL LEU HIS ALA GLY SEQRES 9 B 396 GLY LYS PHE ASP ASP ASN SER TYR LYS VAL SER GLY GLY SEQRES 10 B 396 LEU HIS GLY VAL GLY VAL SER VAL VAL ASN ALA LEU SER SEQRES 11 B 396 GLN LYS LEU GLU LEU VAL ILE GLN ARG GLU GLY LYS ILE SEQRES 12 B 396 HIS ARG GLN ILE TYR GLU HIS GLY VAL PRO GLN ALA PRO SEQRES 13 B 396 LEU ALA VAL THR GLY GLU THR GLU LYS THR GLY THR MET SEQRES 14 B 396 VAL ARG PHE TRP PRO SER LEU GLU THR PHE THR ASN VAL SEQRES 15 B 396 THR GLU PHE GLU TYR GLU ILE LEU ALA LYS ARG LEU ARG SEQRES 16 B 396 GLU LEU SER PHE LEU ASN SER GLY VAL SER ILE ARG LEU SEQRES 17 B 396 ARG ASP LYS ARG ASP GLY LYS GLU ASP HIS PHE HIS TYR SEQRES 18 B 396 GLU GLY GLY ILE LYS ALA PHE VAL GLU TYR LEU ASN LYS SEQRES 19 B 396 ASN LYS THR PRO ILE HIS PRO ASN ILE PHE TYR PHE SER SEQRES 20 B 396 THR GLU LYS ASP GLY ILE GLY VAL GLU VAL ALA LEU GLN SEQRES 21 B 396 TRP ASN ASP GLY PHE GLN GLU ASN ILE TYR CYS PHE THR SEQRES 22 B 396 ASN ASN ILE PRO GLN ARG ASP GLY GLY THR HIS LEU ALA SEQRES 23 B 396 GLY PHE ARG ALA ALA MET THR ARG THR LEU ASN ALA TYR SEQRES 24 B 396 MET ASP LYS GLU GLY TYR SER LYS LYS ALA LYS VAL SER SEQRES 25 B 396 ALA THR GLY ASP ASP ALA ARG GLU GLY LEU ILE ALA VAL SEQRES 26 B 396 VAL SER VAL LYS VAL PRO ASP PRO LYS PHE SER SER GLN SEQRES 27 B 396 THR LYS ASP LYS LEU VAL SER SER GLU VAL LYS SER ALA SEQRES 28 B 396 VAL GLU GLN GLN MET ASN GLU LEU LEU ALA GLU TYR LEU SEQRES 29 B 396 LEU GLU ASN PRO THR ASP ALA LYS ILE VAL VAL GLY LYS SEQRES 30 B 396 ILE ILE ASP ALA ALA ARG ALA ARG GLU ALA ALA ARG ARG SEQRES 31 B 396 ALA ARG GLU MET THR ARG HET PO4 A 401 5 HET PO4 A 402 5 HET PG4 A 403 13 HET CL A 404 1 HET NA A 405 1 HET K A 406 1 HET K A 407 1 HET K A 408 1 HET BHW B 401 80 HET PO4 B 402 5 HET PO4 B 403 5 HET PO4 B 404 5 HET CL B 405 1 HETNAM PO4 PHOSPHATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM K POTASSIUM ION HETNAM BHW COUMERMYCIN A1 FORMUL 3 PO4 5(O4 P 3-) FORMUL 5 PG4 C8 H18 O5 FORMUL 6 CL 2(CL 1-) FORMUL 7 NA NA 1+ FORMUL 8 K 3(K 1+) FORMUL 11 BHW C55 H59 N5 O20 FORMUL 16 HOH *390(H2 O) HELIX 1 AA1 LEU A 16 ARG A 22 1 7 HELIX 2 AA2 ARG A 22 GLY A 28 1 7 HELIX 3 AA3 GLY A 33 ASP A 49 1 17 HELIX 4 AA4 SER A 89 VAL A 97 1 9 HELIX 5 AA5 HIS A 99 ASP A 105 1 7 HELIX 6 AA6 GLY A 119 LEU A 126 1 8 HELIX 7 AA7 GLU A 183 LEU A 197 1 15 HELIX 8 AA8 GLY A 220 ASN A 230 1 11 HELIX 9 AA9 GLY A 279 GLU A 300 1 22 HELIX 10 AB1 SER A 343 ASN A 364 1 22 HELIX 11 AB2 ASN A 364 THR A 392 1 29 HELIX 12 AB3 LEU B 16 ARG B 22 1 7 HELIX 13 AB4 PRO B 23 GLY B 28 1 6 HELIX 14 AB5 GLY B 33 ALA B 53 1 21 HELIX 15 AB6 SER B 89 VAL B 97 1 9 HELIX 16 AB7 HIS B 99 ASP B 105 1 7 HELIX 17 AB8 GLY B 119 LEU B 126 1 8 HELIX 18 AB9 GLU B 183 LEU B 197 1 15 HELIX 19 AC1 GLY B 220 ASN B 230 1 11 HELIX 20 AC2 GLY B 279 GLY B 301 1 23 HELIX 21 AC3 SER B 303 SER B 309 1 7 HELIX 22 AC4 SER B 342 ASN B 364 1 23 HELIX 23 AC5 ASN B 364 MET B 391 1 28 SHEET 1 AA1 3 VAL A 149 PRO A 150 0 SHEET 2 AA1 3 LYS A 139 GLU A 146 -1 N GLU A 146 O VAL A 149 SHEET 3 AA1 3 ALA A 155 GLU A 159 -1 O ALA A 155 N ARG A 142 SHEET 1 AA2 8 VAL A 149 PRO A 150 0 SHEET 2 AA2 8 LYS A 139 GLU A 146 -1 N GLU A 146 O VAL A 149 SHEET 3 AA2 8 SER A 127 ARG A 136 -1 N ILE A 134 O HIS A 141 SHEET 4 AA2 8 GLY A 164 PRO A 171 -1 O ARG A 168 N GLU A 131 SHEET 5 AA2 8 VAL A 69 GLN A 72 -1 N VAL A 69 O PHE A 169 SHEET 6 AA2 8 GLU A 58 ILE A 63 -1 N ILE A 60 O GLN A 72 SHEET 7 AA2 8 SER A 202 ASP A 207 1 O ARG A 204 N VAL A 61 SHEET 8 AA2 8 GLU A 213 PHE A 216 -1 O PHE A 216 N ILE A 203 SHEET 1 AA3 5 PHE A 241 LYS A 247 0 SHEET 2 AA3 5 ILE A 250 TRP A 258 -1 O VAL A 252 N THR A 245 SHEET 3 AA3 5 LEU A 319 LYS A 326 -1 O SER A 324 N GLU A 253 SHEET 4 AA3 5 ASN A 265 THR A 270 1 N TYR A 267 O VAL A 323 SHEET 5 AA3 5 ILE A 273 PRO A 274 -1 O ILE A 273 N THR A 270 SHEET 1 AA4 3 VAL B 149 PRO B 150 0 SHEET 2 AA4 3 LYS B 139 GLU B 146 -1 N GLU B 146 O VAL B 149 SHEET 3 AA4 3 ALA B 155 GLU B 159 -1 O GLY B 158 N ILE B 140 SHEET 1 AA5 8 VAL B 149 PRO B 150 0 SHEET 2 AA5 8 LYS B 139 GLU B 146 -1 N GLU B 146 O VAL B 149 SHEET 3 AA5 8 SER B 127 ARG B 136 -1 N LEU B 130 O TYR B 145 SHEET 4 AA5 8 GLY B 164 PRO B 171 -1 O TRP B 170 N LYS B 129 SHEET 5 AA5 8 VAL B 69 ASP B 73 -1 N ASP B 73 O THR B 165 SHEET 6 AA5 8 GLU B 58 ILE B 63 -1 N ILE B 60 O GLN B 72 SHEET 7 AA5 8 SER B 202 ASP B 207 1 O SER B 202 N ILE B 59 SHEET 8 AA5 8 GLU B 213 PHE B 216 -1 O PHE B 216 N ILE B 203 SHEET 1 AA6 5 PHE B 241 LYS B 247 0 SHEET 2 AA6 5 ILE B 250 TRP B 258 -1 O VAL B 252 N THR B 245 SHEET 3 AA6 5 LEU B 319 LYS B 326 -1 O SER B 324 N GLU B 253 SHEET 4 AA6 5 ASN B 265 THR B 270 1 N TYR B 267 O ALA B 321 SHEET 5 AA6 5 ILE B 273 GLN B 275 -1 O ILE B 273 N THR B 270 LINK O GLY A 102 K K A 406 1555 1555 3.01 LINK O LYS A 103 K K A 406 1555 1555 2.98 LINK O ASP A 105 K K A 406 1555 1555 3.01 LINK O TYR A 242 K K A 408 1555 1555 2.95 LINK O ASN A 271 K K A 407 1555 1555 2.76 LINK O PRO A 274 NA NA A 405 1555 1555 2.82 LINK O THR A 336 NA NA A 405 1555 1555 2.89 LINK O LYS A 337 NA NA A 405 1555 1555 3.00 LINK OD1 ASP A 338 NA NA A 405 1555 1555 3.14 LINK NA NA A 405 O HOH A 695 1555 1555 2.31 LINK K K A 406 O HOH A 543 1555 1555 2.76 LINK K K A 407 O HOH A 589 1555 1555 2.86 LINK K K A 407 O HOH A 599 1555 1555 2.45 LINK K K A 407 O HOH A 621 1555 1555 2.76 LINK K K A 408 O HOH A 640 1555 1555 2.63 LINK K K A 408 O HOH A 682 1555 1555 2.56 LINK K K A 408 O HOH A 689 1555 1555 3.08 SITE 1 AC1 3 ARG A 192 TYR A 228 LYS A 231 SITE 1 AC2 5 HIS A 64 ARG A 168 LYS A 208 HOH A 514 SITE 2 AC2 5 HOH A 531 SITE 1 AC3 8 GLU A 264 ASN A 265 ILE A 266 TYR A 267 SITE 2 AC3 8 CYS A 268 ARG A 276 LEU A 282 HOH A 557 SITE 1 AC4 2 ARG A 204 HIS A 215 SITE 1 AC5 6 ILE A 273 PRO A 274 THR A 336 LYS A 337 SITE 2 AC5 6 ASP A 338 HOH A 695 SITE 1 AC6 4 GLY A 102 LYS A 103 ASP A 105 HOH A 543 SITE 1 AC7 5 ASN A 271 ILE A 273 HOH A 589 HOH A 599 SITE 2 AC7 5 HOH A 621 SITE 1 AC8 4 TYR A 242 HOH A 640 HOH A 682 HOH A 689 SITE 1 AC9 33 ASN A 46 GLU A 50 VAL A 71 ASP A 73 SITE 2 AC9 33 ARG A 76 GLY A 77 ILE A 78 ILE A 94 SITE 3 AC9 33 GLY A 101 PHE A 104 ASP A 105 LYS A 110 SITE 4 AC9 33 VAL A 120 ARG A 136 VAL B 43 ASN B 46 SITE 5 AC9 33 GLU B 50 VAL B 71 ASP B 73 ARG B 76 SITE 6 AC9 33 GLY B 77 ILE B 78 ILE B 94 GLY B 101 SITE 7 AC9 33 PHE B 104 ASP B 105 LYS B 110 VAL B 120 SITE 8 AC9 33 ARG B 136 THR B 165 HOH B 524 HOH B 557 SITE 9 AC9 33 HOH B 608 SITE 1 AD1 3 ARG B 192 TYR B 228 LYS B 231 SITE 1 AD2 7 HIS B 64 ARG B 168 LYS B 208 HOH B 506 SITE 2 AD2 7 HOH B 548 HOH B 560 HOH B 603 SITE 1 AD3 2 LYS B 223 TYR B 242 SITE 1 AD4 2 ARG B 204 HIS B 215 CRYST1 47.830 128.070 159.760 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020907 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007808 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006259 0.00000