HEADER SIGNALING PROTEIN 06-OCT-17 6ENX TITLE ZEBRAFISH SIRT5 IN COMPLEX WITH STALLED BICYCLIC INTERMEDIATE OF TITLE 2 INHIBITORY COMPOUND 10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: REGULATORY PROTEIN SIR2 HOMOLOG 5; COMPND 5 EC: 3.5.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: SIRT5, SI:CH211-121A2.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, PTM, INHIBITOR, SIRTUIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.PANNEK,C.STEEGBORN REVDAT 3 17-JAN-24 6ENX 1 REMARK REVDAT 2 22-NOV-17 6ENX 1 JRNL REVDAT 1 01-NOV-17 6ENX 0 JRNL AUTH N.RAJABI,M.AUTH,K.R.TROELSEN,M.PANNEK,D.P.BHATT,M.FONTENAS, JRNL AUTH 2 M.D.HIRSCHEY,C.STEEGBORN,A.S.MADSEN,C.A.OLSEN JRNL TITL MECHANISM-BASED INHIBITORS OF THE HUMAN SIRTUIN 5 DEACYLASE: JRNL TITL 2 STRUCTURE-ACTIVITY RELATIONSHIP, BIOSTRUCTURAL, AND KINETIC JRNL TITL 3 INSIGHT. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 56 14836 2017 JRNL REFN ESSN 1521-3773 JRNL PMID 29044784 JRNL DOI 10.1002/ANIE.201709050 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1037 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1442 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3690 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2072 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 85 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.18000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : 0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.184 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.995 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2241 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2042 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3050 ; 1.971 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4741 ; 1.162 ; 3.014 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 270 ; 6.200 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;35.337 ;22.660 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 347 ;16.058 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.355 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 328 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2451 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 466 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1077 ; 1.910 ; 2.461 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1078 ; 1.910 ; 2.460 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1345 ; 2.731 ; 3.687 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1346 ; 2.730 ; 3.686 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1164 ; 2.691 ; 2.769 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1162 ; 2.693 ; 2.771 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1704 ; 4.183 ; 4.004 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2471 ; 5.529 ;29.480 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2472 ; 5.528 ;29.473 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6ENX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200006926. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 - 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000030 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20704 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4UTV REMARK 200 REMARK 200 REMARK: SMALL CUBES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG8000 0.2 M MGCL2 0.1 M TRIS/HCL REMARK 280 PH 8.5 0.1 M GLYCINE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.23500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.12500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.23500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.12500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 563 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 28 REMARK 465 MET A 29 REMARK 465 THR A 30 REMARK 465 ARG A 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 564 O HOH A 571 1.80 REMARK 500 O HOH A 506 O HOH A 525 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 527 O HOH A 527 2555 0.95 REMARK 500 N GLY A 184 OE2 GLU A 192 2556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 272 CG - SD - CE ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 90 72.73 -152.47 REMARK 500 SER A 207 16.75 91.04 REMARK 500 CYS A 208 -64.02 -109.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 569 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 570 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A 572 DISTANCE = 7.84 ANGSTROMS REMARK 525 HOH A 573 DISTANCE = 7.90 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 162 SG REMARK 620 2 CYS A 165 SG 102.9 REMARK 620 3 CYS A 203 SG 110.8 117.2 REMARK 620 4 CYS A 208 SG 102.2 117.8 104.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BJW A 303 DBREF 6ENX A 28 298 UNP Q6DHI5 SIR5_DANRE 28 298 SEQRES 1 A 271 LYS MET THR ARG PRO SER SER ASP LEU THR ALA PHE ARG SEQRES 2 A 271 GLU HIS PHE ALA LYS ALA LYS HIS ILE ALA ILE ILE THR SEQRES 3 A 271 GLY ALA GLY VAL SER ALA GLU SER GLY VAL PRO THR PHE SEQRES 4 A 271 ARG GLY PRO GLY GLY PHE TRP ARG LYS TRP GLN ALA GLN SEQRES 5 A 271 ASP LEU ALA THR PRO GLU ALA PHE SER ARG ASP PRO SER SEQRES 6 A 271 LEU VAL TRP GLU PHE TYR HIS TYR ARG ARG GLU VAL MET SEQRES 7 A 271 ARG SER LYS MET PRO ASN PRO ALA HIS LEU ALA ILE ALA SEQRES 8 A 271 GLU CYS GLU ALA ARG LEU GLY GLN GLN GLY ARG SER VAL SEQRES 9 A 271 VAL ILE ILE THR GLN ASN ILE ASP GLU LEU HIS HIS ARG SEQRES 10 A 271 ALA GLY SER LYS HIS VAL TYR GLU ILE HIS GLY SER LEU SEQRES 11 A 271 PHE LYS THR ARG CYS MET SER CYS GLY GLU VAL LYS ALA SEQRES 12 A 271 ASN HIS LYS SER PRO ILE CYS PRO ALA LEU ASP GLY LYS SEQRES 13 A 271 GLY ALA PRO ASP PRO ASN THR LYS GLU ALA ARG ILE PRO SEQRES 14 A 271 VAL GLU LEU LEU PRO ARG CYS GLU ARG LYS SER CYS ASN SEQRES 15 A 271 GLY LEU LEU ARG PRO HIS VAL VAL TRP PHE GLY GLU THR SEQRES 16 A 271 LEU ASP SER ASP ILE LEU THR ALA VAL GLU ARG GLU LEU SEQRES 17 A 271 GLU LYS CYS ASP LEU CYS LEU VAL VAL GLY THR SER SER SEQRES 18 A 271 ILE VAL TYR PRO ALA ALA MET PHE ALA PRO GLN VAL ALA SEQRES 19 A 271 SER ARG GLY VAL PRO VAL ALA GLU PHE ASN MET GLU CYS SEQRES 20 A 271 THR PRO ALA THR GLN ARG PHE LYS TYR HIS PHE GLU GLY SEQRES 21 A 271 PRO CYS GLY SER THR LEU PRO PRO ALA LEU GLU HET ZN A 301 1 HET DMS A 302 4 HET BJW A 303 80 HETNAM ZN ZINC ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM BJW 4-[(2~{R},3~{A}~{R},5~{R},6~{R},6~{A}~{R})-5- HETNAM 2 BJW [[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-3, HETNAM 3 BJW 4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL- HETNAM 4 BJW PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXYMETHYL]-2- HETNAM 5 BJW [[(5~{S})-6-[[(2~{S})-3-(1~{H}-INDOL-3-YL)-1- HETNAM 6 BJW OXIDANYLIDENE-1-(PROPAN-2-YLAMINO)PROPAN-2-YL]AMINO]- HETNAM 7 BJW 6-OXIDANYLIDENE-5-(PHENYLMETHOXYCARBONYLAMINO) HETNAM 8 BJW HEXYL]AMINO]-6-OXIDANYL-3~{A},5,6,6~{A}- HETNAM 9 BJW TETRAHYDROFURO[2,3-D][1,3]OXATHIOL-2-YL]BUTANOIC ACID FORMUL 2 ZN ZN 2+ FORMUL 3 DMS C2 H6 O S FORMUL 4 BJW C48 H64 N10 O19 P2 S FORMUL 5 HOH *173(H2 O) HELIX 1 AA1 ASP A 35 ALA A 46 1 12 HELIX 2 AA2 ALA A 55 GLY A 62 5 8 HELIX 3 AA3 GLY A 71 TRP A 76 1 6 HELIX 4 AA4 GLN A 77 ALA A 82 1 6 HELIX 5 AA5 THR A 83 ASP A 90 1 8 HELIX 6 AA6 ASP A 90 ARG A 106 1 17 HELIX 7 AA7 ASN A 111 GLN A 127 1 17 HELIX 8 AA8 GLU A 140 ALA A 145 1 6 HELIX 9 AA9 CYS A 177 ASP A 181 5 5 HELIX 10 AB1 THR A 190 ARG A 194 5 5 HELIX 11 AB2 PRO A 196 LEU A 200 5 5 HELIX 12 AB3 ASP A 224 CYS A 238 1 15 HELIX 13 AB4 PRO A 252 ALA A 254 5 3 HELIX 14 AB5 MET A 255 SER A 262 1 8 HELIX 15 AB6 ALA A 277 PHE A 281 5 5 HELIX 16 AB7 PRO A 288 LEU A 297 1 10 SHEET 1 AA1 6 VAL A 150 GLU A 152 0 SHEET 2 AA1 6 SER A 130 THR A 135 1 N ILE A 133 O TYR A 151 SHEET 3 AA1 6 HIS A 48 THR A 53 1 N ILE A 49 O SER A 130 SHEET 4 AA1 6 LEU A 240 VAL A 244 1 O LEU A 242 N ILE A 52 SHEET 5 AA1 6 VAL A 267 ASN A 271 1 O PHE A 270 N VAL A 243 SHEET 6 AA1 6 TYR A 283 GLU A 286 1 O PHE A 285 N GLU A 269 SHEET 1 AA2 3 VAL A 168 ALA A 170 0 SHEET 2 AA2 3 GLY A 155 CYS A 162 -1 N THR A 160 O LYS A 169 SHEET 3 AA2 3 LEU A 212 VAL A 216 -1 O ARG A 213 N ARG A 161 LINK SG CYS A 162 ZN ZN A 301 1555 1555 2.32 LINK SG CYS A 165 ZN ZN A 301 1555 1555 2.30 LINK SG CYS A 203 ZN ZN A 301 1555 1555 2.26 LINK SG CYS A 208 ZN ZN A 301 1555 1555 2.29 CISPEP 1 SER A 174 PRO A 175 0 -6.28 CISPEP 2 TYR A 251 PRO A 252 0 2.43 CISPEP 3 TYR A 251 PRO A 252 0 -1.10 SITE 1 AC1 4 CYS A 162 CYS A 165 CYS A 203 CYS A 208 SITE 1 AC2 7 TYR A 251 ALA A 254 PRO A 276 ALA A 277 SITE 2 AC2 7 ARG A 280 BJW A 303 HOH A 457 SITE 1 AC3 38 GLY A 54 ALA A 55 GLY A 56 THR A 65 SITE 2 AC3 38 PHE A 66 ARG A 67 TRP A 73 TYR A 98 SITE 3 AC3 38 ARG A 101 GLN A 136 ILE A 138 HIS A 154 SITE 4 AC3 38 VAL A 217 TRP A 218 PHE A 219 GLY A 220 SITE 5 AC3 38 GLU A 221 GLU A 232 GLY A 245 THR A 246 SITE 6 AC3 38 SER A 247 ILE A 249 VAL A 250 TYR A 251 SITE 7 AC3 38 MET A 255 PHE A 256 GLN A 259 ASN A 271 SITE 8 AC3 38 MET A 272 GLU A 273 PRO A 288 CYS A 289 SITE 9 AC3 38 DMS A 302 HOH A 404 HOH A 415 HOH A 416 SITE 10 AC3 38 HOH A 443 HOH A 452 CRYST1 116.470 38.250 75.550 90.00 122.51 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008586 0.000000 0.005472 0.00000 SCALE2 0.000000 0.026144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015696 0.00000