HEADER HYDROLASE 10-OCT-17 6EOM TITLE STRUCTURE OF DPP III FROM CALDITHRIX ABYSSI COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUTT/NUDIX FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPTIDASE FAMILY M49; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALDITHRIX ABYSSI DSM 13497; SOURCE 3 ORGANISM_TAXID: 880073; SOURCE 4 GENE: CABYS_2252, CALAB_3349; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-21A(+) KEYWDS CALDITHRIX ABYSSI, METALLOPEPTIDASE, DIPEPTIDYL PEPTIDASE III, DPP KEYWDS 2 III, ZINC-HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.SABLJIC REVDAT 1 07-MAR-18 6EOM 0 JRNL AUTH I.SABLJIC,M.TOMIN,M.MATOVINA,I.SUCEC,A.TOMASIC PAIC,A.TOMIC, JRNL AUTH 2 M.ABRAMIC,S.TOMIC JRNL TITL THE FIRST DIPEPTIDYL PEPTIDASE III FROM A THERMOPHILE: JRNL TITL 2 STRUCTURAL BASIS FOR THERMAL STABILITY AND REDUCED ACTIVITY. JRNL REF PLOS ONE V. 13 92488 2018 JRNL REFN ESSN 1932-6203 JRNL PMID 29420664 JRNL DOI 10.1371/JOURNAL.PONE.0192488 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 36872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1858 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0138 - 4.9421 1.00 2867 177 0.1780 0.1804 REMARK 3 2 4.9421 - 3.9232 1.00 2734 155 0.1570 0.1576 REMARK 3 3 3.9232 - 3.4275 1.00 2738 122 0.1854 0.2459 REMARK 3 4 3.4275 - 3.1142 1.00 2691 165 0.2149 0.2738 REMARK 3 5 3.1142 - 2.8910 1.00 2701 133 0.2343 0.2906 REMARK 3 6 2.8910 - 2.7205 1.00 2694 117 0.2384 0.2666 REMARK 3 7 2.7205 - 2.5843 1.00 2668 144 0.2428 0.2960 REMARK 3 8 2.5843 - 2.4718 1.00 2691 133 0.2479 0.2738 REMARK 3 9 2.4718 - 2.3767 1.00 2646 143 0.2566 0.3106 REMARK 3 10 2.3767 - 2.2947 1.00 2689 132 0.2497 0.2771 REMARK 3 11 2.2947 - 2.2229 1.00 2643 158 0.2710 0.3583 REMARK 3 12 2.2229 - 2.1594 1.00 2650 130 0.2721 0.3187 REMARK 3 13 2.1594 - 2.1025 0.98 2602 149 0.2948 0.3528 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4386 REMARK 3 ANGLE : 0.448 5911 REMARK 3 CHIRALITY : 0.039 632 REMARK 3 PLANARITY : 0.004 774 REMARK 3 DIHEDRAL : 15.790 2660 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 32:250)) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6951 5.8159 -33.5787 REMARK 3 T TENSOR REMARK 3 T11: 0.2713 T22: 0.2235 REMARK 3 T33: 0.3745 T12: 0.0012 REMARK 3 T13: 0.0555 T23: 0.0527 REMARK 3 L TENSOR REMARK 3 L11: 0.7417 L22: 1.5198 REMARK 3 L33: 1.3070 L12: 0.3611 REMARK 3 L13: 0.1394 L23: 0.4928 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: 0.0197 S13: -0.0309 REMARK 3 S21: -0.1207 S22: 0.0030 S23: -0.0659 REMARK 3 S31: 0.0235 S32: 0.0212 S33: 0.0134 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 251:342)) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4871 3.2078 -12.0325 REMARK 3 T TENSOR REMARK 3 T11: 0.2315 T22: 0.2827 REMARK 3 T33: 0.4205 T12: -0.0308 REMARK 3 T13: 0.0063 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.4273 L22: 3.2256 REMARK 3 L33: 3.8057 L12: -1.1813 REMARK 3 L13: 1.2871 L23: -3.5325 REMARK 3 S TENSOR REMARK 3 S11: -0.0330 S12: 0.0309 S13: 0.1673 REMARK 3 S21: 0.1194 S22: -0.1916 S23: -0.4549 REMARK 3 S31: -0.1143 S32: 0.3041 S33: 0.1785 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 343:540)) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6560 -9.2353 -6.5260 REMARK 3 T TENSOR REMARK 3 T11: 0.2052 T22: 0.2630 REMARK 3 T33: 0.3072 T12: -0.0311 REMARK 3 T13: 0.0275 T23: 0.0429 REMARK 3 L TENSOR REMARK 3 L11: 3.0007 L22: 1.8887 REMARK 3 L33: 0.8523 L12: -1.4213 REMARK 3 L13: 0.0470 L23: -0.1522 REMARK 3 S TENSOR REMARK 3 S11: 0.0187 S12: 0.0690 S13: 0.1658 REMARK 3 S21: -0.0121 S22: 0.0135 S23: 0.0304 REMARK 3 S31: -0.0275 S32: -0.1083 S33: -0.0342 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 541:555)) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7771 14.5112 -24.5240 REMARK 3 T TENSOR REMARK 3 T11: 0.2700 T22: 0.3027 REMARK 3 T33: 0.3604 T12: 0.0349 REMARK 3 T13: 0.0574 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 6.6676 L22: 4.2765 REMARK 3 L33: 2.5937 L12: 5.3244 REMARK 3 L13: -2.4427 L23: -2.1562 REMARK 3 S TENSOR REMARK 3 S11: -0.4007 S12: 0.0980 S13: -0.0430 REMARK 3 S21: -0.5172 S22: 0.2461 S23: -0.2158 REMARK 3 S31: 0.2403 S32: -0.0290 S33: 0.1596 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EOM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200006458. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.27050 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36965 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.81900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: SE-MET LABELED PROTEIN SOLVED USING MAD METODE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5, 25% PEG 3,350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.73600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.48650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.27450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.48650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.73600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.27450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ARG A 3 REMARK 465 ILE A 4 REMARK 465 LEU A 5 REMARK 465 LEU A 6 REMARK 465 VAL A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 THR A 10 REMARK 465 LEU A 11 REMARK 465 VAL A 12 REMARK 465 PHE A 13 REMARK 465 LEU A 14 REMARK 465 GLY A 15 REMARK 465 ALA A 16 REMARK 465 ILE A 17 REMARK 465 ALA A 18 REMARK 465 CYS A 19 REMARK 465 GLN A 20 REMARK 465 ARG A 21 REMARK 465 LYS A 22 REMARK 465 GLU A 23 REMARK 465 GLU A 24 REMARK 465 ASN A 25 REMARK 465 LYS A 26 REMARK 465 THR A 27 REMARK 465 GLU A 28 REMARK 465 MET A 29 REMARK 465 VAL A 30 REMARK 465 LYS A 31 REMARK 465 ASN A 556 REMARK 465 SER A 557 REMARK 465 ASN A 558 REMARK 465 LEU A 559 REMARK 465 GLU A 560 REMARK 465 HIS A 561 REMARK 465 HIS A 562 REMARK 465 HIS A 563 REMARK 465 HIS A 564 REMARK 465 HIS A 565 REMARK 465 HIS A 566 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 VAL A 263 CG1 CG2 REMARK 470 GLU A 264 CG CD OE1 OE2 REMARK 470 LYS A 267 CG CD CE NZ REMARK 470 LEU A 268 CG CD1 CD2 REMARK 470 LYS A 269 CB CG CD CE NZ REMARK 470 GLU A 296 CG CD OE1 OE2 REMARK 470 ARG A 327 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 332 CG CD CE NZ REMARK 470 LYS A 401 CD CE NZ REMARK 470 GLU A 458 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ALA A 605 N LYS A 606 1.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 114 56.08 -148.54 REMARK 500 ALA A 129 -119.49 53.02 REMARK 500 TYR A 239 -70.51 -142.51 REMARK 500 LEU A 350 -59.94 -126.22 REMARK 500 LYS A 404 -126.75 61.35 REMARK 500 ASP A 543 -142.71 -143.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1034 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A1035 DISTANCE = 6.46 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ALA A 605 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 607 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 311 O REMARK 620 2 ALA A 313 O 103.9 REMARK 620 3 VAL A 315 O 100.3 88.8 REMARK 620 4 HOH A 949 O 135.6 83.1 123.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 379 NE2 REMARK 620 2 HIS A 383 NE2 95.5 REMARK 620 3 GLU A 412 OE1 87.4 117.9 REMARK 620 4 GLU A 412 OE2 150.7 86.8 66.1 REMARK 620 5 HOH A 955 O 100.2 117.1 123.2 104.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ALA A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LYS A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 607 DBREF 6EOM A 1 558 UNP H1XW48 H1XW48_9BACT 1 558 SEQADV 6EOM ARG A 21 UNP H1XW48 LYS 21 CONFLICT SEQADV 6EOM LEU A 559 UNP H1XW48 EXPRESSION TAG SEQADV 6EOM GLU A 560 UNP H1XW48 EXPRESSION TAG SEQADV 6EOM HIS A 561 UNP H1XW48 EXPRESSION TAG SEQADV 6EOM HIS A 562 UNP H1XW48 EXPRESSION TAG SEQADV 6EOM HIS A 563 UNP H1XW48 EXPRESSION TAG SEQADV 6EOM HIS A 564 UNP H1XW48 EXPRESSION TAG SEQADV 6EOM HIS A 565 UNP H1XW48 EXPRESSION TAG SEQADV 6EOM HIS A 566 UNP H1XW48 EXPRESSION TAG SEQRES 1 A 566 MET LYS ARG ILE LEU LEU VAL LEU LEU THR LEU VAL PHE SEQRES 2 A 566 LEU GLY ALA ILE ALA CYS GLN ARG LYS GLU GLU ASN LYS SEQRES 3 A 566 THR GLU MET VAL LYS LEU LYS ARG MET ILE ALA GLN PHE SEQRES 4 A 566 ALA PRO THR GLU ILE LYS TYR ASP HIS SER LEU LEU ASP SEQRES 5 A 566 GLU ARG LYS GLN LYS VAL VAL GLU ASN LEU TYR ARG ALA SEQRES 6 A 566 ALA LYS ILE MET ASP GLU ILE PHE LEU ASP GLN VAL TYR SEQRES 7 A 566 SER LYS ASN PHE GLU ILE ARG GLU GLN LEU ARG ALA SER SEQRES 8 A 566 SER ASP PRO LEU ASP GLN LEU ARG LEU GLU TYR PHE THR SEQRES 9 A 566 ILE MET PHE GLY PRO PHE ASP ARG LEU ASN HIS ASP LYS SEQRES 10 A 566 PRO PHE ILE GLY ASN THR PRO LYS PRO LYS GLY ALA ASN SEQRES 11 A 566 PHE TYR PRO PRO ASP MET THR ARG GLU GLU PHE GLU ASN SEQRES 12 A 566 TRP LEU LYS ALA HIS PRO GLU ASP GLU ALA ALA PHE THR SEQRES 13 A 566 SER GLU PHE THR VAL ILE ARG ARG GLN ASP GLY LYS LEU SEQRES 14 A 566 VAL ALA ILE PRO TYR SER GLU TYR TYR LYS GLU TYR LEU SEQRES 15 A 566 THR ARG ALA ALA ASP TYR LEU LYS LYS ALA ALA GLU PHE SEQRES 16 A 566 ALA ASP ASN PRO SER LEU LYS LYS TYR LEU GLN LEU ARG SEQRES 17 A 566 ALA GLU ALA PHE LEU ASN ASN ASP TYR TYR GLU SER ASP SEQRES 18 A 566 LEU ALA TRP MET ASP LEU ASN ASP HIS THR ILE GLU VAL SEQRES 19 A 566 VAL ILE GLY PRO TYR GLU VAL TYR GLU ASP LYS LEU PHE SEQRES 20 A 566 ASN TYR LYS ALA ALA PHE GLU ALA PHE ILE THR LEU ARG SEQRES 21 A 566 ASP PRO VAL GLU SER ALA LYS LEU LYS LYS PHE VAL GLY SEQRES 22 A 566 TYR LEU ASP GLU MET GLU LYS ASN LEU PRO ILE PRO ASP SEQRES 23 A 566 ALA TYR LYS ASN PHE ASN ARG GLY SER GLU SER PRO MET SEQRES 24 A 566 VAL VAL VAL GLN GLU VAL PHE SER ALA GLY ASP THR LYS SEQRES 25 A 566 ALA GLY VAL GLN THR LEU ALA PHE ASN LEU PRO ASN ASP SEQRES 26 A 566 GLU ARG VAL ARG GLU ALA LYS GLY SER LYS LYS VAL MET SEQRES 27 A 566 LEU LYS ASN ILE HIS GLU ALA LYS PHE ASP LYS LEU LEU SEQRES 28 A 566 LYS PRO ILE ALA GLU LYS VAL LEU PHE ALA GLU GLN LEU SEQRES 29 A 566 PRO LEU VAL THR PHE GLU GLY PHE PHE ASN HIS THR LEU SEQRES 30 A 566 MET HIS GLU ILE SER HIS GLY LEU GLY PRO GLY LYS ILE SEQRES 31 A 566 VAL LEU ASN GLY ARG GLN THR GLU VAL LYS LYS GLU LEU SEQRES 32 A 566 LYS GLU THR TYR SER SER ILE GLU GLU CYS LYS ALA ASP SEQRES 33 A 566 VAL LEU GLY MET TYR ASN ASN LEU PHE MET ILE GLU LYS SEQRES 34 A 566 GLY VAL TYR PRO PRO GLU PHE GLU LYS GLN ILE TYR VAL SEQRES 35 A 566 THR PHE LEU ALA GLY ILE PHE ARG THR ILE ARG PHE GLY SEQRES 36 A 566 ILE ASN GLU ALA HIS GLY ALA GLY ASN ALA VAL ILE PHE SEQRES 37 A 566 ASN TYR LEU LEU GLU LYS GLY ALA TYR GLN PHE ASP PRO SEQRES 38 A 566 ALA ALA HIS ARG VAL LYS VAL ASN PHE GLU LYS ILE LYS SEQRES 39 A 566 ASP GLY VAL ARG ASP LEU ALA ASN LYS VAL LEU THR ILE SEQRES 40 A 566 GLN ALA GLN GLY ASP TYR MET ALA ALA LYS ASN LEU LEU SEQRES 41 A 566 GLU THR TYR ALA VAL GLU SER GLU PRO ILE MET ILE MET SEQRES 42 A 566 ARG ALA ARG LEU GLN GLU LEU PRO VAL ASP ILE LYS PRO SEQRES 43 A 566 ILE PHE GLN ILE GLU LYS GLU LEU GLY ASN SER ASN LEU SEQRES 44 A 566 GLU HIS HIS HIS HIS HIS HIS HET ZN A 601 1 HET CL A 602 1 HET EDO A 603 4 HET EDO A 604 4 HET ALA A 605 5 HET LYS A 606 10 HET NA A 607 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ALA ALANINE HETNAM LYS LYSINE HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 CL CL 1- FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 ALA C3 H7 N O2 FORMUL 7 LYS C6 H15 N2 O2 1+ FORMUL 8 NA NA 1+ FORMUL 9 HOH *335(H2 O) HELIX 1 AA1 LEU A 32 ALA A 37 1 6 HELIX 2 AA2 ASP A 47 LEU A 51 5 5 HELIX 3 AA3 ASP A 52 TYR A 78 1 27 HELIX 4 AA4 LYS A 80 SER A 91 1 12 HELIX 5 AA5 ASP A 93 PHE A 107 1 15 HELIX 6 AA6 THR A 137 HIS A 148 1 12 HELIX 7 AA7 ASP A 151 THR A 156 1 6 HELIX 8 AA8 TYR A 174 TYR A 178 1 5 HELIX 9 AA9 TYR A 178 ALA A 196 1 19 HELIX 10 AB1 ASN A 198 ASN A 215 1 18 HELIX 11 AB2 TYR A 217 ASP A 226 1 10 HELIX 12 AB3 ASP A 261 LYS A 269 1 9 HELIX 13 AB4 PHE A 271 GLY A 273 5 3 HELIX 14 AB5 TYR A 274 ASN A 281 1 8 HELIX 15 AB6 PRO A 285 LYS A 289 5 5 HELIX 16 AB7 THR A 311 ALA A 313 5 3 HELIX 17 AB8 ASP A 325 LYS A 332 1 8 HELIX 18 AB9 LYS A 340 LEU A 350 1 11 HELIX 19 AC1 LEU A 350 LEU A 359 1 10 HELIX 20 AC2 GLN A 363 VAL A 367 5 5 HELIX 21 AC3 THR A 368 GLY A 384 1 17 HELIX 22 AC4 VAL A 399 LYS A 404 1 6 HELIX 23 AC5 THR A 406 LYS A 429 1 24 HELIX 24 AC6 GLU A 435 ILE A 452 1 18 HELIX 25 AC7 ARG A 453 GLY A 455 5 3 HELIX 26 AC8 GLU A 458 LYS A 474 1 17 HELIX 27 AC9 LYS A 492 GLN A 510 1 19 HELIX 28 AD1 ASP A 512 ALA A 524 1 13 HELIX 29 AD2 SER A 527 LEU A 537 1 11 HELIX 30 AD3 GLN A 549 GLY A 555 1 7 SHEET 1 AA1 2 PHE A 39 ILE A 44 0 SHEET 2 AA1 2 ASP A 543 PHE A 548 1 O LYS A 545 N ALA A 40 SHEET 1 AA2 2 THR A 160 GLN A 165 0 SHEET 2 AA2 2 LYS A 168 PRO A 173 -1 O ILE A 172 N VAL A 161 SHEET 1 AA3 5 ILE A 232 PRO A 238 0 SHEET 2 AA3 5 PHE A 253 ARG A 260 -1 O PHE A 256 N VAL A 235 SHEET 3 AA3 5 MET A 299 GLY A 309 -1 O VAL A 305 N ILE A 257 SHEET 4 AA3 5 LYS A 335 LEU A 339 1 O MET A 338 N VAL A 302 SHEET 5 AA3 5 ALA A 319 LEU A 322 -1 N LEU A 322 O LYS A 335 SHEET 1 AA4 2 LYS A 389 LEU A 392 0 SHEET 2 AA4 2 ARG A 395 GLU A 398 -1 O THR A 397 N ILE A 390 SHEET 1 AA5 2 TYR A 477A ASP A 480 0 SHEET 2 AA5 2 ARG A 485 VAL A 488 -1 O ARG A 485 N ASP A 480 LINK O THR A 311 NA NA A 607 1555 1555 2.43 LINK O ALA A 313 NA NA A 607 1555 1555 2.31 LINK O VAL A 315 NA NA A 607 1555 1555 2.41 LINK NE2 HIS A 379 ZN ZN A 601 1555 1555 2.03 LINK NE2 HIS A 383 ZN ZN A 601 1555 1555 2.03 LINK OE1 GLU A 412 ZN ZN A 601 1555 1555 2.00 LINK OE2 GLU A 412 ZN ZN A 601 1555 1555 2.01 LINK ZN ZN A 601 O HOH A 955 1555 1555 2.08 LINK NA NA A 607 O HOH A 949 1555 1555 2.41 CISPEP 1 LEU A 322 PRO A 323 0 -3.59 SITE 1 AC1 4 HIS A 379 HIS A 383 GLU A 412 HOH A 955 SITE 1 AC2 4 LYS A 55 LEU A 201 THR A 231 ILE A 232 SITE 1 AC3 5 TYR A 177 TYR A 178 TYR A 181 HOH A 812 SITE 2 AC3 5 HOH A 823 SITE 1 AC4 4 GLU A 53 PRO A 124 PRO A 126 PRO A 134 SITE 1 AC5 4 LEU A 318 ALA A 319 LYS A 606 HOH A 938 SITE 1 AC6 7 VAL A 315 THR A 317 LEU A 318 LYS A 346 SITE 2 AC6 7 ARG A 450 ALA A 605 HOH A 721 SITE 1 AC7 5 ASP A 310 THR A 311 ALA A 313 VAL A 315 SITE 2 AC7 5 HOH A 949 CRYST1 51.472 90.549 132.973 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019428 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011044 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007520 0.00000