HEADER TOXIN 10-OCT-17 6EP0 TITLE ENTEROCOCCUS FAECALIS FIC PROTEIN IN COMPLEX WITH AMP AND CALCIUM ION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIC FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 1351; SOURCE 4 GENE: D350_01176; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR S.VEYRON,J.CHERFILS REVDAT 4 17-JAN-24 6EP0 1 REMARK LINK REVDAT 3 20-MAR-19 6EP0 1 JRNL REVDAT 2 13-FEB-19 6EP0 1 TITLE JRNL REVDAT 1 06-FEB-19 6EP0 0 JRNL AUTH S.VEYRON,G.OLIVA,M.ROLANDO,C.BUCHRIESER,G.PEYROCHE, JRNL AUTH 2 J.CHERFILS JRNL TITL A CA2+-REGULATED DEAMPYLATION SWITCH IN HUMAN AND BACTERIAL JRNL TITL 2 FIC PROTEINS. JRNL REF NAT COMMUN V. 10 1142 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30850593 JRNL DOI 10.1038/S41467-019-09023-1 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1132 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.45 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.13 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2653 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2490 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2530 REMARK 3 BIN R VALUE (WORKING SET) : 0.2468 REMARK 3 BIN FREE R VALUE : 0.2934 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.64 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 123 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3334 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.71470 REMARK 3 B22 (A**2) : -5.71470 REMARK 3 B33 (A**2) : 11.42940 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.347 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.246 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.323 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.243 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3454 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4659 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1281 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 106 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 508 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3454 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 5 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 437 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4158 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.94 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.47 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -10.2369 28.9175 11.0845 REMARK 3 T TENSOR REMARK 3 T11: -0.1414 T22: 0.0067 REMARK 3 T33: -0.0448 T12: -0.0286 REMARK 3 T13: -0.0139 T23: 0.0666 REMARK 3 L TENSOR REMARK 3 L11: 1.5263 L22: 0.6856 REMARK 3 L33: 3.3909 L12: -0.2231 REMARK 3 L13: 1.2650 L23: -0.1636 REMARK 3 S TENSOR REMARK 3 S11: 0.0404 S12: -0.3387 S13: -0.1406 REMARK 3 S21: -0.0269 S22: 0.0738 S23: -0.1180 REMARK 3 S31: 0.0041 S32: -0.2617 S33: -0.1142 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -36.0127 36.6407 23.6857 REMARK 3 T TENSOR REMARK 3 T11: -0.1998 T22: 0.2509 REMARK 3 T33: -0.1526 T12: 0.0178 REMARK 3 T13: -0.0117 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 2.1243 L22: 0.9462 REMARK 3 L33: 1.5562 L12: -0.1567 REMARK 3 L13: -0.3125 L23: -0.0492 REMARK 3 S TENSOR REMARK 3 S11: -0.0938 S12: -0.5442 S13: -0.1230 REMARK 3 S21: -0.0066 S22: 0.0994 S23: 0.1313 REMARK 3 S31: 0.1036 S32: 0.3542 S33: -0.0056 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EP0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200006994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976247 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23042 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 82.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.70 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 17.80 REMARK 200 R MERGE FOR SHELL (I) : 1.14600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5NUW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM TRIS PH 8.0, 100MM NACL, 5MM AMP, REMARK 280 0.2M CALCIUM CHLORIDE, 0.1M HEPES SODIUM SALT PH 7.5, 28% (V/V) REMARK 280 PEG 400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.11950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.48750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.48750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.55975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.48750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.48750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 184.67925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.48750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.48750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.55975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.48750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.48750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 184.67925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 123.11950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 MET A 8 REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 206 O HOH B 401 2.02 REMARK 500 NZ LYS B 34 O ASP B 205 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 101 48.84 -151.46 REMARK 500 GLN B 101 47.14 -141.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 32 OD1 REMARK 620 2 ASP A 63 OD2 90.2 REMARK 620 3 HOH A 455 O 77.2 85.6 REMARK 620 4 ASP B 63 OD1 62.9 80.4 15.5 REMARK 620 5 HOH B 440 O 115.5 93.0 167.2 173.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 306 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 63 OD1 REMARK 620 2 ASP B 63 OD1 32.7 REMARK 620 3 ASP B 63 OD2 31.7 1.9 REMARK 620 4 HOH B 440 O 68.5 61.3 63.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 122 OE1 REMARK 620 2 AMP A 301 O2P 80.3 REMARK 620 3 HOH A 415 O 80.1 107.1 REMARK 620 4 HOH A 418 O 110.4 162.9 63.4 REMARK 620 5 HOH A 419 O 171.7 91.5 103.4 77.8 REMARK 620 6 HOH B 454 O 100.9 99.4 153.1 91.8 79.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 201 O REMARK 620 2 GLU A 201 OE2 67.4 REMARK 620 3 GLU B 201 OE1 81.9 78.1 REMARK 620 4 HOH B 407 O 139.5 150.1 91.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 201 OE1 REMARK 620 2 HOH A 460 O 81.7 REMARK 620 3 GLU B 201 O 70.2 144.0 REMARK 620 4 HOH B 402 O 78.3 139.4 56.6 REMARK 620 5 HOH B 457 O 131.0 92.6 89.4 127.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 122 OE1 REMARK 620 2 GLU B 122 OE2 52.7 REMARK 620 3 AMP B 301 O2P 128.3 85.1 REMARK 620 4 HOH B 403 O 147.3 157.5 81.7 REMARK 620 5 HOH B 411 O 59.2 98.4 171.1 92.3 REMARK 620 6 HOH B 449 O 106.3 78.7 90.3 83.3 82.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5NUW RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN EMPTY STRUCTURE DBREF 6EP0 A 8 207 UNP U6S0Y1 U6S0Y1_ENTFL 1 200 DBREF 6EP0 B 8 207 UNP U6S0Y1 U6S0Y1_ENTFL 1 200 SEQADV 6EP0 MET A 1 UNP U6S0Y1 INITIATING METHIONINE SEQADV 6EP0 HIS A 2 UNP U6S0Y1 EXPRESSION TAG SEQADV 6EP0 HIS A 3 UNP U6S0Y1 EXPRESSION TAG SEQADV 6EP0 HIS A 4 UNP U6S0Y1 EXPRESSION TAG SEQADV 6EP0 HIS A 5 UNP U6S0Y1 EXPRESSION TAG SEQADV 6EP0 HIS A 6 UNP U6S0Y1 EXPRESSION TAG SEQADV 6EP0 HIS A 7 UNP U6S0Y1 EXPRESSION TAG SEQADV 6EP0 ASN A 32 UNP U6S0Y1 LYS 25 CONFLICT SEQADV 6EP0 ARG A 35 UNP U6S0Y1 GLN 28 CONFLICT SEQADV 6EP0 ILE A 45 UNP U6S0Y1 VAL 38 CONFLICT SEQADV 6EP0 VAL A 47 UNP U6S0Y1 ILE 40 CONFLICT SEQADV 6EP0 ARG A 142 UNP U6S0Y1 GLN 135 CONFLICT SEQADV 6EP0 ASN A 150 UNP U6S0Y1 ASP 143 CONFLICT SEQADV 6EP0 ASP A 205 UNP U6S0Y1 GLU 198 CONFLICT SEQADV 6EP0 GLU A 206 UNP U6S0Y1 ASP 199 CONFLICT SEQADV 6EP0 MET B 1 UNP U6S0Y1 INITIATING METHIONINE SEQADV 6EP0 HIS B 2 UNP U6S0Y1 EXPRESSION TAG SEQADV 6EP0 HIS B 3 UNP U6S0Y1 EXPRESSION TAG SEQADV 6EP0 HIS B 4 UNP U6S0Y1 EXPRESSION TAG SEQADV 6EP0 HIS B 5 UNP U6S0Y1 EXPRESSION TAG SEQADV 6EP0 HIS B 6 UNP U6S0Y1 EXPRESSION TAG SEQADV 6EP0 HIS B 7 UNP U6S0Y1 EXPRESSION TAG SEQADV 6EP0 ASN B 32 UNP U6S0Y1 LYS 25 CONFLICT SEQADV 6EP0 ARG B 35 UNP U6S0Y1 GLN 28 CONFLICT SEQADV 6EP0 ILE B 45 UNP U6S0Y1 VAL 38 CONFLICT SEQADV 6EP0 VAL B 47 UNP U6S0Y1 ILE 40 CONFLICT SEQADV 6EP0 ARG B 142 UNP U6S0Y1 GLN 135 CONFLICT SEQADV 6EP0 ASN B 150 UNP U6S0Y1 ASP 143 CONFLICT SEQADV 6EP0 ASP B 205 UNP U6S0Y1 GLU 198 CONFLICT SEQADV 6EP0 GLU B 206 UNP U6S0Y1 ASP 199 CONFLICT SEQRES 1 A 207 MET HIS HIS HIS HIS HIS HIS MET LEU GLU ASN LYS LEU SEQRES 2 A 207 GLY ILE ILE ASN GLN LEU GLU LEU ASN ARG VAL GLU GLU SEQRES 3 A 207 ARG VAL SER LYS GLU ASN ALA LYS ARG LEU TYR ASP SER SEQRES 4 A 207 GLY ASP ILE ASP ARG ILE GLU VAL GLY THR PHE LYS GLY SEQRES 5 A 207 LEU SER TYR ILE HIS ASN TYR LEU PHE GLU ASP ILE TYR SEQRES 6 A 207 GLU PHE ALA GLY LYS VAL ARG SER GLN ASN ILE SER LYS SEQRES 7 A 207 GLY ASN PHE ARG PHE ALA PRO VAL MET TYR LEU GLU ILE SEQRES 8 A 207 ALA LEU GLU HIS ILE ASP LYS MET PRO GLN ARG ASN LEU SEQRES 9 A 207 ASP GLU ILE VAL ALA LYS TYR VAL GLU MET ASN ILE ALA SEQRES 10 A 207 HIS PRO PHE ARG GLU GLY ASN GLY ARG ALA THR ARG ILE SEQRES 11 A 207 TRP LEU ASP LEU ILE LEU LYS LYS GLU LEU LYS ARG VAL SEQRES 12 A 207 VAL ASP TRP ASN LEU ILE ASN LYS GLU ASP TYR LEU SER SEQRES 13 A 207 ALA MET GLU ARG SER PRO VAL LYS ASP LEU GLU ILE LYS SEQRES 14 A 207 TYR LEU ILE SER ASN ALA LEU THR ASP LYS ILE ASN ASP SEQRES 15 A 207 ARG GLU ILE PHE MET LYS GLY ILE ASP ILE SER TYR TYR SEQRES 16 A 207 TYR GLU GLY TYR THR GLU TYR ASN VAL ASP GLU LEU SEQRES 1 B 207 MET HIS HIS HIS HIS HIS HIS MET LEU GLU ASN LYS LEU SEQRES 2 B 207 GLY ILE ILE ASN GLN LEU GLU LEU ASN ARG VAL GLU GLU SEQRES 3 B 207 ARG VAL SER LYS GLU ASN ALA LYS ARG LEU TYR ASP SER SEQRES 4 B 207 GLY ASP ILE ASP ARG ILE GLU VAL GLY THR PHE LYS GLY SEQRES 5 B 207 LEU SER TYR ILE HIS ASN TYR LEU PHE GLU ASP ILE TYR SEQRES 6 B 207 GLU PHE ALA GLY LYS VAL ARG SER GLN ASN ILE SER LYS SEQRES 7 B 207 GLY ASN PHE ARG PHE ALA PRO VAL MET TYR LEU GLU ILE SEQRES 8 B 207 ALA LEU GLU HIS ILE ASP LYS MET PRO GLN ARG ASN LEU SEQRES 9 B 207 ASP GLU ILE VAL ALA LYS TYR VAL GLU MET ASN ILE ALA SEQRES 10 B 207 HIS PRO PHE ARG GLU GLY ASN GLY ARG ALA THR ARG ILE SEQRES 11 B 207 TRP LEU ASP LEU ILE LEU LYS LYS GLU LEU LYS ARG VAL SEQRES 12 B 207 VAL ASP TRP ASN LEU ILE ASN LYS GLU ASP TYR LEU SER SEQRES 13 B 207 ALA MET GLU ARG SER PRO VAL LYS ASP LEU GLU ILE LYS SEQRES 14 B 207 TYR LEU ILE SER ASN ALA LEU THR ASP LYS ILE ASN ASP SEQRES 15 B 207 ARG GLU ILE PHE MET LYS GLY ILE ASP ILE SER TYR TYR SEQRES 16 B 207 TYR GLU GLY TYR THR GLU TYR ASN VAL ASP GLU LEU HET AMP A 301 23 HET CA A 302 1 HET CA A 303 1 HET CA A 304 1 HET CA A 305 1 HET CA A 306 1 HET CL A 307 1 HET AMP B 301 23 HET CA B 302 1 HET CL B 303 1 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 3 AMP 2(C10 H14 N5 O7 P) FORMUL 4 CA 6(CA 2+) FORMUL 9 CL 2(CL 1-) FORMUL 13 HOH *133(H2 O) HELIX 1 AA1 ASN A 17 SER A 39 1 23 HELIX 2 AA2 GLY A 40 ARG A 44 5 5 HELIX 3 AA3 THR A 49 GLU A 62 1 14 HELIX 4 AA4 PRO A 85 MET A 87 5 3 HELIX 5 AA5 TYR A 88 MET A 99 1 12 HELIX 6 AA6 ASN A 103 HIS A 118 1 16 HELIX 7 AA7 GLY A 123 LYS A 141 1 19 HELIX 8 AA8 TRP A 146 ILE A 149 5 4 HELIX 9 AA9 ASN A 150 SER A 161 1 12 HELIX 10 AB1 ASP A 165 ASN A 174 1 10 HELIX 11 AB2 ASP A 182 TYR A 196 1 15 HELIX 12 AB3 ASN A 203 LEU A 207 5 5 HELIX 13 AB4 ASN B 17 SER B 39 1 23 HELIX 14 AB5 GLY B 40 ILE B 45 1 6 HELIX 15 AB6 THR B 49 GLU B 62 1 14 HELIX 16 AB7 PRO B 85 LYS B 98 1 14 HELIX 17 AB8 ASN B 103 HIS B 118 1 16 HELIX 18 AB9 GLY B 123 LYS B 141 1 19 HELIX 19 AC1 TRP B 146 ILE B 149 5 4 HELIX 20 AC2 ASN B 150 SER B 161 1 12 HELIX 21 AC3 ASP B 165 ALA B 175 1 11 HELIX 22 AC4 ASP B 182 GLU B 197 1 16 SHEET 1 AA1 2 SER A 77 LYS A 78 0 SHEET 2 AA1 2 PHE A 81 ARG A 82 -1 O PHE A 81 N LYS A 78 SHEET 1 AA2 2 VAL A 143 VAL A 144 0 SHEET 2 AA2 2 LEU A 176 THR A 177 -1 O THR A 177 N VAL A 143 SHEET 1 AA3 2 SER B 77 LYS B 78 0 SHEET 2 AA3 2 PHE B 81 ARG B 82 -1 O PHE B 81 N LYS B 78 SHEET 1 AA4 2 VAL B 143 VAL B 144 0 SHEET 2 AA4 2 LEU B 176 THR B 177 -1 O THR B 177 N VAL B 143 LINK OD1 ASN A 32 CA CA A 305 1555 1555 2.51 LINK OD2 ASP A 63 CA CA A 305 1555 1555 2.42 LINK OD1 ASP A 63 CA CA A 306 1555 1555 2.73 LINK OE1 GLU A 122 CA CA A 302 1555 1555 2.12 LINK O GLU A 201 CA CA A 303 1555 1555 2.37 LINK OE2 GLU A 201 CA CA A 303 1555 1555 2.30 LINK OE1 GLU A 201 CA CA A 304 1555 1555 2.20 LINK O2P AMP A 301 CA CA A 302 1555 1555 2.35 LINK CA CA A 302 O HOH A 415 1555 1555 2.10 LINK CA CA A 302 O HOH A 418 1555 1555 2.90 LINK CA CA A 302 O HOH A 419 1555 1555 2.13 LINK CA CA A 302 O HOH B 454 1555 1555 2.52 LINK CA CA A 303 OE1 GLU B 201 1555 1555 2.37 LINK CA CA A 303 O HOH B 407 1555 1555 2.32 LINK CA CA A 304 O HOH A 460 1555 1555 2.61 LINK CA CA A 304 O GLU B 201 1555 1555 3.09 LINK CA CA A 304 O HOH B 402 1555 1555 2.03 LINK CA CA A 304 O HOH B 457 1555 1555 2.34 LINK CA CA A 305 O HOH A 455 1555 1555 2.75 LINK CA CA A 305 OD1 ASP B 63 5455 1555 2.89 LINK CA CA A 305 O HOH B 440 1555 5445 2.68 LINK CA CA A 306 OD1 ASP B 63 5455 1555 3.01 LINK CA CA A 306 OD2 ASP B 63 5455 1555 2.63 LINK CA CA A 306 O HOH B 440 1555 5445 2.75 LINK OE1 GLU B 122 CA CA B 302 1555 1555 2.57 LINK OE2 GLU B 122 CA CA B 302 1555 1555 2.38 LINK O2P AMP B 301 CA CA B 302 1555 1555 2.27 LINK CA CA B 302 O HOH B 403 1555 1555 2.15 LINK CA CA B 302 O HOH B 411 1555 1555 2.88 LINK CA CA B 302 O HOH B 449 1555 1555 2.41 SITE 1 AC1 15 LYS A 78 ASN A 115 HIS A 118 GLU A 122 SITE 2 AC1 15 GLY A 123 ASN A 124 GLY A 125 ARG A 129 SITE 3 AC1 15 TYR A 154 MET A 158 GLU A 159 GLU A 197 SITE 4 AC1 15 CA A 302 HOH A 417 HOH A 424 SITE 1 AC2 6 GLU A 122 AMP A 301 HOH A 415 HOH A 418 SITE 2 AC2 6 HOH A 419 HOH B 454 SITE 1 AC3 5 GLU A 201 HOH A 401 HOH A 434 GLU B 201 SITE 2 AC3 5 HOH B 407 SITE 1 AC4 6 ARG A 23 GLU A 201 HOH A 460 GLU B 201 SITE 2 AC4 6 HOH B 402 HOH B 457 SITE 1 AC5 6 ASN A 32 ARG A 35 ASP A 63 HOH A 455 SITE 2 AC5 6 ASP B 63 HOH B 440 SITE 1 AC6 4 ASP A 63 ASN B 32 ASP B 63 HOH B 440 SITE 1 AC7 5 GLY A 123 GLY A 125 ARG A 126 GLU A 197 SITE 2 AC7 5 HOH A 415 SITE 1 AC8 16 LYS B 78 ASN B 115 HIS B 118 GLU B 122 SITE 2 AC8 16 GLY B 123 ASN B 124 GLY B 125 ARG B 129 SITE 3 AC8 16 TYR B 154 MET B 158 GLU B 197 CA B 302 SITE 4 AC8 16 CL B 303 HOH B 403 HOH B 420 HOH B 445 SITE 1 AC9 6 GLU B 122 AMP B 301 CL B 303 HOH B 403 SITE 2 AC9 6 HOH B 411 HOH B 449 SITE 1 AD1 5 GLY B 123 ARG B 126 GLU B 197 AMP B 301 SITE 2 AD1 5 CA B 302 CRYST1 64.975 64.975 246.239 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015391 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015391 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004061 0.00000