HEADER HYDROLASE 12-OCT-17 6EQH TITLE CRYSTAL STRUCTURE OF A POLYETHYLENE TEREPHTHALATE DEGRADING HYDROLASE TITLE 2 FROM IDEONELLA SAKAIENSIS IN SPACEGROUP C2221 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(ETHYLENE TEREPHTHALATE) HYDROLASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PETASE; COMPND 5 EC: 3.1.1.101; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: IDEONELLA SAKAIENSIS (STRAIN 201-F6); SOURCE 3 ORGANISM_TAXID: 1547922; SOURCE 4 GENE: ISF6_4831; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C41 KEYWDS PETASE, PET DEGRADATION, A/B HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.P.AUSTIN,M.D.ALLEN,C.W.JOHNSON,G.T.BECKHAM,J.E.MCGEEHAN REVDAT 4 17-JAN-24 6EQH 1 REMARK REVDAT 3 16-MAY-18 6EQH 1 JRNL REVDAT 2 02-MAY-18 6EQH 1 JRNL REVDAT 1 25-APR-18 6EQH 0 JRNL AUTH H.P.AUSTIN,M.D.ALLEN,B.S.DONOHOE,N.A.RORRER,F.L.KEARNS, JRNL AUTH 2 R.L.SILVEIRA,B.C.POLLARD,G.DOMINICK,R.DUMAN,K.EL OMARI, JRNL AUTH 3 V.MYKHAYLYK,A.WAGNER,W.E.MICHENER,A.AMORE,M.S.SKAF, JRNL AUTH 4 M.F.CROWLEY,A.W.THORNE,C.W.JOHNSON,H.L.WOODCOCK, JRNL AUTH 5 J.E.MCGEEHAN,G.T.BECKHAM JRNL TITL CHARACTERIZATION AND ENGINEERING OF A PLASTIC-DEGRADING JRNL TITL 2 AROMATIC POLYESTERASE. JRNL REF PROC. NATL. ACAD. SCI. V. 115 E4350 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29666242 JRNL DOI 10.1073/PNAS.1718804115 REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 139743 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 6926 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6930 - 4.9072 0.99 4708 263 0.1676 0.1779 REMARK 3 2 4.9072 - 3.8958 1.00 4529 244 0.1305 0.1568 REMARK 3 3 3.8958 - 3.4035 1.00 4488 261 0.1409 0.1368 REMARK 3 4 3.4035 - 3.0924 1.00 4476 207 0.1555 0.1682 REMARK 3 5 3.0924 - 2.8708 1.00 4515 219 0.1616 0.1757 REMARK 3 6 2.8708 - 2.7016 1.00 4443 236 0.1670 0.1810 REMARK 3 7 2.7016 - 2.5663 1.00 4456 224 0.1648 0.1922 REMARK 3 8 2.5663 - 2.4546 1.00 4426 245 0.1678 0.1767 REMARK 3 9 2.4546 - 2.3601 1.00 4430 224 0.1685 0.1771 REMARK 3 10 2.3601 - 2.2787 1.00 4423 222 0.1625 0.1693 REMARK 3 11 2.2787 - 2.2074 1.00 4424 235 0.1674 0.1806 REMARK 3 12 2.2074 - 2.1443 1.00 4430 239 0.1695 0.1893 REMARK 3 13 2.1443 - 2.0879 1.00 4410 225 0.1747 0.2173 REMARK 3 14 2.0879 - 2.0370 1.00 4409 227 0.1748 0.1811 REMARK 3 15 2.0370 - 1.9906 1.00 4434 214 0.1709 0.1852 REMARK 3 16 1.9906 - 1.9483 1.00 4412 213 0.1776 0.2081 REMARK 3 17 1.9483 - 1.9093 1.00 4415 221 0.1945 0.2056 REMARK 3 18 1.9093 - 1.8733 1.00 4391 215 0.1983 0.2403 REMARK 3 19 1.8733 - 1.8398 1.00 4436 213 0.1924 0.2388 REMARK 3 20 1.8398 - 1.8086 1.00 4389 213 0.2019 0.2097 REMARK 3 21 1.8086 - 1.7795 1.00 4420 232 0.1990 0.2519 REMARK 3 22 1.7795 - 1.7521 1.00 4358 223 0.2086 0.2394 REMARK 3 23 1.7521 - 1.7263 1.00 4421 230 0.2284 0.2409 REMARK 3 24 1.7263 - 1.7020 1.00 4360 217 0.2328 0.2624 REMARK 3 25 1.7020 - 1.6790 1.00 4385 256 0.2486 0.2687 REMARK 3 26 1.6790 - 1.6572 1.00 4378 233 0.2575 0.2796 REMARK 3 27 1.6572 - 1.6365 1.00 4357 250 0.2756 0.2922 REMARK 3 28 1.6365 - 1.6168 1.00 4404 222 0.2956 0.3425 REMARK 3 29 1.6168 - 1.5980 1.00 4304 257 0.3052 0.3275 REMARK 3 30 1.5980 - 1.5800 0.99 4386 246 0.3457 0.3455 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5995 REMARK 3 ANGLE : 0.826 8186 REMARK 3 CHIRALITY : 0.055 904 REMARK 3 PLANARITY : 0.006 1081 REMARK 3 DIHEDRAL : 2.607 4831 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EQH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200007062. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 139895 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 49.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.74200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6EQD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M MGSO4, 0.1 M MES, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.56150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.56150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.35100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 117.06700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.35100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 117.06700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.56150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.35100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 117.06700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 82.56150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.35100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 117.06700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 457 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 519 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 581 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 PHE A 3 REMARK 465 PRO A 4 REMARK 465 ARG A 5 REMARK 465 ALA A 6 REMARK 465 SER A 7 REMARK 465 ARG A 8 REMARK 465 LEU A 9 REMARK 465 MET A 10 REMARK 465 GLN A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 VAL A 14 REMARK 465 LEU A 15 REMARK 465 GLY A 16 REMARK 465 GLY A 17 REMARK 465 LEU A 18 REMARK 465 MET A 19 REMARK 465 ALA A 20 REMARK 465 VAL A 21 REMARK 465 SER A 22 REMARK 465 ALA A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 THR A 26 REMARK 465 ALA A 27 REMARK 465 GLN A 28 REMARK 465 GLU A 292 REMARK 465 HIS A 293 REMARK 465 HIS A 294 REMARK 465 HIS A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 PHE B 3 REMARK 465 PRO B 4 REMARK 465 ARG B 5 REMARK 465 ALA B 6 REMARK 465 SER B 7 REMARK 465 ARG B 8 REMARK 465 LEU B 9 REMARK 465 MET B 10 REMARK 465 GLN B 11 REMARK 465 ALA B 12 REMARK 465 ALA B 13 REMARK 465 VAL B 14 REMARK 465 LEU B 15 REMARK 465 GLY B 16 REMARK 465 GLY B 17 REMARK 465 LEU B 18 REMARK 465 MET B 19 REMARK 465 ALA B 20 REMARK 465 VAL B 21 REMARK 465 SER B 22 REMARK 465 ALA B 23 REMARK 465 ALA B 24 REMARK 465 ALA B 25 REMARK 465 THR B 26 REMARK 465 ALA B 27 REMARK 465 GLN B 28 REMARK 465 HIS B 293 REMARK 465 HIS B 294 REMARK 465 HIS B 295 REMARK 465 HIS B 296 REMARK 465 HIS B 297 REMARK 465 HIS B 298 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 PHE C 3 REMARK 465 PRO C 4 REMARK 465 ARG C 5 REMARK 465 ALA C 6 REMARK 465 SER C 7 REMARK 465 ARG C 8 REMARK 465 LEU C 9 REMARK 465 MET C 10 REMARK 465 GLN C 11 REMARK 465 ALA C 12 REMARK 465 ALA C 13 REMARK 465 VAL C 14 REMARK 465 LEU C 15 REMARK 465 GLY C 16 REMARK 465 GLY C 17 REMARK 465 LEU C 18 REMARK 465 MET C 19 REMARK 465 ALA C 20 REMARK 465 VAL C 21 REMARK 465 SER C 22 REMARK 465 ALA C 23 REMARK 465 ALA C 24 REMARK 465 ALA C 25 REMARK 465 THR C 26 REMARK 465 ALA C 27 REMARK 465 GLN C 28 REMARK 465 LEU C 291 REMARK 465 GLU C 292 REMARK 465 HIS C 293 REMARK 465 HIS C 294 REMARK 465 HIS C 295 REMARK 465 HIS C 296 REMARK 465 HIS C 297 REMARK 465 HIS C 298 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 325 O HOH C 539 1.80 REMARK 500 O HOH A 544 O HOH A 564 1.81 REMARK 500 O HOH C 479 O HOH C 521 1.83 REMARK 500 O HOH A 366 O HOH A 535 1.84 REMARK 500 O HOH A 425 O HOH A 566 1.88 REMARK 500 O HOH A 303 O HOH A 540 1.88 REMARK 500 N ARG C 59 O HOH C 301 1.89 REMARK 500 O HOH A 366 O HOH B 565 1.95 REMARK 500 O HOH A 494 O HOH A 581 1.98 REMARK 500 O HOH C 415 O HOH C 561 2.00 REMARK 500 O HOH B 338 O HOH B 524 2.00 REMARK 500 O HOH B 364 O HOH B 533 2.01 REMARK 500 O HOH C 414 O HOH C 488 2.06 REMARK 500 OE2 GLU B 204 O HOH B 301 2.08 REMARK 500 O HOH A 459 O HOH A 467 2.08 REMARK 500 O HOH C 447 O HOH C 544 2.08 REMARK 500 O HOH A 592 O HOH A 627 2.09 REMARK 500 O HOH A 367 O HOH A 573 2.09 REMARK 500 O HOH B 370 O HOH B 598 2.10 REMARK 500 O HOH A 392 O HOH A 548 2.10 REMARK 500 O HOH C 497 O HOH C 526 2.11 REMARK 500 O HOH C 465 O HOH C 575 2.11 REMARK 500 O HOH B 490 O HOH B 493 2.11 REMARK 500 O HOH C 301 O HOH C 520 2.12 REMARK 500 O HOH B 526 O HOH B 614 2.12 REMARK 500 O HOH C 338 O HOH C 549 2.13 REMARK 500 O HOH C 305 O HOH C 343 2.13 REMARK 500 O HOH A 573 O HOH A 603 2.13 REMARK 500 OE1 GLN C 119 O HOH C 302 2.14 REMARK 500 O HOH C 392 O HOH C 537 2.14 REMARK 500 O HOH A 480 O HOH A 619 2.14 REMARK 500 O HOH B 501 O HOH B 609 2.15 REMARK 500 O HOH A 301 O HOH A 552 2.16 REMARK 500 O HOH B 378 O HOH B 607 2.16 REMARK 500 O HOH A 302 O HOH A 371 2.16 REMARK 500 O HOH B 409 O HOH B 620 2.17 REMARK 500 O HOH C 331 O HOH C 500 2.18 REMARK 500 N THR B 29 O HOH B 302 2.18 REMARK 500 O HOH B 485 O HOH B 580 2.18 REMARK 500 O HOH B 303 O HOH B 566 2.19 REMARK 500 OG SER C 121 O HOH C 303 2.19 REMARK 500 O HOH B 315 O HOH B 403 2.19 REMARK 500 O HOH A 559 O HOH A 587 2.19 REMARK 500 O HOH B 452 O HOH B 478 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 504 O HOH A 504 3757 2.02 REMARK 500 O HOH A 608 O HOH A 627 3757 2.08 REMARK 500 O HOH C 561 O HOH C 597 3856 2.09 REMARK 500 O HOH B 304 O HOH B 346 8477 2.11 REMARK 500 O HOH A 592 O HOH A 608 3757 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 53 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 53 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 88 -3.02 69.85 REMARK 500 SER A 160 -122.71 64.89 REMARK 500 ALA A 183 55.19 39.34 REMARK 500 SER A 214 -86.16 -132.78 REMARK 500 THR B 88 -0.45 71.18 REMARK 500 SER B 160 -123.10 66.39 REMARK 500 SER B 214 -86.07 -133.96 REMARK 500 THR C 88 -0.96 70.79 REMARK 500 SER C 160 -120.35 63.08 REMARK 500 SER C 214 -86.28 -138.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 642 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B 643 DISTANCE = 6.43 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6EQD RELATED DB: PDB REMARK 900 ORIGINAL PETASE STRUCTURE DBREF1 6EQH A 1 290 UNP PETH_IDESA DBREF2 6EQH A A0A0K8P6T7 1 290 DBREF1 6EQH B 1 290 UNP PETH_IDESA DBREF2 6EQH B A0A0K8P6T7 1 290 DBREF1 6EQH C 1 290 UNP PETH_IDESA DBREF2 6EQH C A0A0K8P6T7 1 290 SEQADV 6EQH LEU A 291 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH GLU A 292 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH HIS A 293 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH HIS A 294 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH HIS A 295 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH HIS A 296 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH HIS A 297 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH HIS A 298 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH LEU B 291 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH GLU B 292 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH HIS B 293 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH HIS B 294 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH HIS B 295 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH HIS B 296 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH HIS B 297 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH HIS B 298 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH LEU C 291 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH GLU C 292 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH HIS C 293 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH HIS C 294 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH HIS C 295 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH HIS C 296 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH HIS C 297 UNP A0A0K8P6T EXPRESSION TAG SEQADV 6EQH HIS C 298 UNP A0A0K8P6T EXPRESSION TAG SEQRES 1 A 298 MET ASN PHE PRO ARG ALA SER ARG LEU MET GLN ALA ALA SEQRES 2 A 298 VAL LEU GLY GLY LEU MET ALA VAL SER ALA ALA ALA THR SEQRES 3 A 298 ALA GLN THR ASN PRO TYR ALA ARG GLY PRO ASN PRO THR SEQRES 4 A 298 ALA ALA SER LEU GLU ALA SER ALA GLY PRO PHE THR VAL SEQRES 5 A 298 ARG SER PHE THR VAL SER ARG PRO SER GLY TYR GLY ALA SEQRES 6 A 298 GLY THR VAL TYR TYR PRO THR ASN ALA GLY GLY THR VAL SEQRES 7 A 298 GLY ALA ILE ALA ILE VAL PRO GLY TYR THR ALA ARG GLN SEQRES 8 A 298 SER SER ILE LYS TRP TRP GLY PRO ARG LEU ALA SER HIS SEQRES 9 A 298 GLY PHE VAL VAL ILE THR ILE ASP THR ASN SER THR LEU SEQRES 10 A 298 ASP GLN PRO SER SER ARG SER SER GLN GLN MET ALA ALA SEQRES 11 A 298 LEU ARG GLN VAL ALA SER LEU ASN GLY THR SER SER SER SEQRES 12 A 298 PRO ILE TYR GLY LYS VAL ASP THR ALA ARG MET GLY VAL SEQRES 13 A 298 MET GLY TRP SER MET GLY GLY GLY GLY SER LEU ILE SER SEQRES 14 A 298 ALA ALA ASN ASN PRO SER LEU LYS ALA ALA ALA PRO GLN SEQRES 15 A 298 ALA PRO TRP ASP SER SER THR ASN PHE SER SER VAL THR SEQRES 16 A 298 VAL PRO THR LEU ILE PHE ALA CYS GLU ASN ASP SER ILE SEQRES 17 A 298 ALA PRO VAL ASN SER SER ALA LEU PRO ILE TYR ASP SER SEQRES 18 A 298 MET SER ARG ASN ALA LYS GLN PHE LEU GLU ILE ASN GLY SEQRES 19 A 298 GLY SER HIS SER CYS ALA ASN SER GLY ASN SER ASN GLN SEQRES 20 A 298 ALA LEU ILE GLY LYS LYS GLY VAL ALA TRP MET LYS ARG SEQRES 21 A 298 PHE MET ASP ASN ASP THR ARG TYR SER THR PHE ALA CYS SEQRES 22 A 298 GLU ASN PRO ASN SER THR ARG VAL SER ASP PHE ARG THR SEQRES 23 A 298 ALA ASN CYS SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 298 MET ASN PHE PRO ARG ALA SER ARG LEU MET GLN ALA ALA SEQRES 2 B 298 VAL LEU GLY GLY LEU MET ALA VAL SER ALA ALA ALA THR SEQRES 3 B 298 ALA GLN THR ASN PRO TYR ALA ARG GLY PRO ASN PRO THR SEQRES 4 B 298 ALA ALA SER LEU GLU ALA SER ALA GLY PRO PHE THR VAL SEQRES 5 B 298 ARG SER PHE THR VAL SER ARG PRO SER GLY TYR GLY ALA SEQRES 6 B 298 GLY THR VAL TYR TYR PRO THR ASN ALA GLY GLY THR VAL SEQRES 7 B 298 GLY ALA ILE ALA ILE VAL PRO GLY TYR THR ALA ARG GLN SEQRES 8 B 298 SER SER ILE LYS TRP TRP GLY PRO ARG LEU ALA SER HIS SEQRES 9 B 298 GLY PHE VAL VAL ILE THR ILE ASP THR ASN SER THR LEU SEQRES 10 B 298 ASP GLN PRO SER SER ARG SER SER GLN GLN MET ALA ALA SEQRES 11 B 298 LEU ARG GLN VAL ALA SER LEU ASN GLY THR SER SER SER SEQRES 12 B 298 PRO ILE TYR GLY LYS VAL ASP THR ALA ARG MET GLY VAL SEQRES 13 B 298 MET GLY TRP SER MET GLY GLY GLY GLY SER LEU ILE SER SEQRES 14 B 298 ALA ALA ASN ASN PRO SER LEU LYS ALA ALA ALA PRO GLN SEQRES 15 B 298 ALA PRO TRP ASP SER SER THR ASN PHE SER SER VAL THR SEQRES 16 B 298 VAL PRO THR LEU ILE PHE ALA CYS GLU ASN ASP SER ILE SEQRES 17 B 298 ALA PRO VAL ASN SER SER ALA LEU PRO ILE TYR ASP SER SEQRES 18 B 298 MET SER ARG ASN ALA LYS GLN PHE LEU GLU ILE ASN GLY SEQRES 19 B 298 GLY SER HIS SER CYS ALA ASN SER GLY ASN SER ASN GLN SEQRES 20 B 298 ALA LEU ILE GLY LYS LYS GLY VAL ALA TRP MET LYS ARG SEQRES 21 B 298 PHE MET ASP ASN ASP THR ARG TYR SER THR PHE ALA CYS SEQRES 22 B 298 GLU ASN PRO ASN SER THR ARG VAL SER ASP PHE ARG THR SEQRES 23 B 298 ALA ASN CYS SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 298 MET ASN PHE PRO ARG ALA SER ARG LEU MET GLN ALA ALA SEQRES 2 C 298 VAL LEU GLY GLY LEU MET ALA VAL SER ALA ALA ALA THR SEQRES 3 C 298 ALA GLN THR ASN PRO TYR ALA ARG GLY PRO ASN PRO THR SEQRES 4 C 298 ALA ALA SER LEU GLU ALA SER ALA GLY PRO PHE THR VAL SEQRES 5 C 298 ARG SER PHE THR VAL SER ARG PRO SER GLY TYR GLY ALA SEQRES 6 C 298 GLY THR VAL TYR TYR PRO THR ASN ALA GLY GLY THR VAL SEQRES 7 C 298 GLY ALA ILE ALA ILE VAL PRO GLY TYR THR ALA ARG GLN SEQRES 8 C 298 SER SER ILE LYS TRP TRP GLY PRO ARG LEU ALA SER HIS SEQRES 9 C 298 GLY PHE VAL VAL ILE THR ILE ASP THR ASN SER THR LEU SEQRES 10 C 298 ASP GLN PRO SER SER ARG SER SER GLN GLN MET ALA ALA SEQRES 11 C 298 LEU ARG GLN VAL ALA SER LEU ASN GLY THR SER SER SER SEQRES 12 C 298 PRO ILE TYR GLY LYS VAL ASP THR ALA ARG MET GLY VAL SEQRES 13 C 298 MET GLY TRP SER MET GLY GLY GLY GLY SER LEU ILE SER SEQRES 14 C 298 ALA ALA ASN ASN PRO SER LEU LYS ALA ALA ALA PRO GLN SEQRES 15 C 298 ALA PRO TRP ASP SER SER THR ASN PHE SER SER VAL THR SEQRES 16 C 298 VAL PRO THR LEU ILE PHE ALA CYS GLU ASN ASP SER ILE SEQRES 17 C 298 ALA PRO VAL ASN SER SER ALA LEU PRO ILE TYR ASP SER SEQRES 18 C 298 MET SER ARG ASN ALA LYS GLN PHE LEU GLU ILE ASN GLY SEQRES 19 C 298 GLY SER HIS SER CYS ALA ASN SER GLY ASN SER ASN GLN SEQRES 20 C 298 ALA LEU ILE GLY LYS LYS GLY VAL ALA TRP MET LYS ARG SEQRES 21 C 298 PHE MET ASP ASN ASP THR ARG TYR SER THR PHE ALA CYS SEQRES 22 C 298 GLU ASN PRO ASN SER THR ARG VAL SER ASP PHE ARG THR SEQRES 23 C 298 ALA ASN CYS SER LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 4 HOH *990(H2 O) HELIX 1 AA1 THR A 39 ALA A 45 1 7 HELIX 2 AA2 ARG A 90 LYS A 95 5 6 HELIX 3 AA3 TRP A 96 SER A 103 1 8 HELIX 4 AA4 GLN A 119 GLY A 139 1 21 HELIX 5 AA5 SER A 160 ASN A 173 1 14 HELIX 6 AA6 SER A 214 MET A 222 1 9 HELIX 7 AA7 ASN A 246 ASP A 263 1 18 HELIX 8 AA8 ASP A 265 ARG A 267 5 3 HELIX 9 AA9 TYR A 268 GLU A 274 1 7 HELIX 10 AB1 THR B 39 ALA B 45 1 7 HELIX 11 AB2 ARG B 90 LYS B 95 5 6 HELIX 12 AB3 TRP B 96 SER B 103 1 8 HELIX 13 AB4 GLN B 119 GLY B 139 1 21 HELIX 14 AB5 SER B 160 ASN B 173 1 14 HELIX 15 AB6 SER B 214 MET B 222 1 9 HELIX 16 AB7 ASN B 246 ASP B 263 1 18 HELIX 17 AB8 ASP B 265 ARG B 267 5 3 HELIX 18 AB9 TYR B 268 GLU B 274 1 7 HELIX 19 AC1 THR C 39 ALA C 45 1 7 HELIX 20 AC2 ARG C 90 LYS C 95 5 6 HELIX 21 AC3 TRP C 96 SER C 103 1 8 HELIX 22 AC4 GLN C 119 GLY C 139 1 21 HELIX 23 AC5 SER C 160 ASN C 173 1 14 HELIX 24 AC6 PRO C 210 SER C 213 5 4 HELIX 25 AC7 SER C 214 MET C 222 1 9 HELIX 26 AC8 ASN C 246 ASP C 263 1 18 HELIX 27 AC9 ASP C 265 ARG C 267 5 3 HELIX 28 AD1 TYR C 268 GLU C 274 1 7 SHEET 1 AA1 6 VAL A 52 THR A 56 0 SHEET 2 AA1 6 ALA A 65 PRO A 71 -1 O VAL A 68 N PHE A 55 SHEET 3 AA1 6 VAL A 107 ASP A 112 -1 O VAL A 108 N TYR A 69 SHEET 4 AA1 6 VAL A 78 VAL A 84 1 N ILE A 81 O ILE A 109 SHEET 5 AA1 6 VAL A 149 TRP A 159 1 O ASP A 150 N VAL A 78 SHEET 6 AA1 6 ALA A 178 GLN A 182 1 O GLN A 182 N GLY A 158 SHEET 1 AA2 3 THR A 198 CYS A 203 0 SHEET 2 AA2 3 LYS A 227 ILE A 232 1 O GLN A 228 N ILE A 200 SHEET 3 AA2 3 VAL A 281 ALA A 287 -1 O ARG A 285 N PHE A 229 SHEET 1 AA3 6 VAL B 52 THR B 56 0 SHEET 2 AA3 6 ALA B 65 PRO B 71 -1 O VAL B 68 N PHE B 55 SHEET 3 AA3 6 VAL B 107 ASP B 112 -1 O VAL B 108 N TYR B 69 SHEET 4 AA3 6 VAL B 78 VAL B 84 1 N ILE B 81 O ILE B 109 SHEET 5 AA3 6 VAL B 149 GLY B 158 1 O ASP B 150 N VAL B 78 SHEET 6 AA3 6 ALA B 178 ALA B 179 1 O ALA B 178 N VAL B 156 SHEET 1 AA4 3 THR B 198 CYS B 203 0 SHEET 2 AA4 3 LYS B 227 ILE B 232 1 O ILE B 232 N ALA B 202 SHEET 3 AA4 3 VAL B 281 ALA B 287 -1 O ARG B 285 N PHE B 229 SHEET 1 AA5 6 VAL C 52 THR C 56 0 SHEET 2 AA5 6 ALA C 65 PRO C 71 -1 O VAL C 68 N PHE C 55 SHEET 3 AA5 6 VAL C 107 ASP C 112 -1 O VAL C 108 N TYR C 69 SHEET 4 AA5 6 VAL C 78 VAL C 84 1 N ILE C 81 O ILE C 109 SHEET 5 AA5 6 VAL C 149 TRP C 159 1 O ASP C 150 N VAL C 78 SHEET 6 AA5 6 ALA C 178 GLN C 182 1 O GLN C 182 N GLY C 158 SHEET 1 AA6 3 THR C 198 CYS C 203 0 SHEET 2 AA6 3 LYS C 227 ILE C 232 1 O ILE C 232 N ALA C 202 SHEET 3 AA6 3 VAL C 281 ALA C 287 -1 O ARG C 285 N PHE C 229 SSBOND 1 CYS A 203 CYS A 239 1555 1555 2.06 SSBOND 2 CYS A 273 CYS A 289 1555 1555 2.04 SSBOND 3 CYS B 203 CYS B 239 1555 1555 2.07 SSBOND 4 CYS B 273 CYS B 289 1555 1555 2.03 SSBOND 5 CYS C 203 CYS C 239 1555 1555 2.06 SSBOND 6 CYS C 273 CYS C 289 1555 1555 2.06 CRYST1 52.702 234.134 165.123 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018975 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006056 0.00000