HEADER TRANSCRIPTION 16-OCT-17 6EQY TITLE 4TH KOW DOMAIN OF HUMAN HSPT5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION ELONGATION FACTOR SPT5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HSPT5,DRB SENSITIVITY-INDUCING FACTOR 160 KDA SUBUNIT,DSIF COMPND 5 P160,DRB SENSITIVITY-INDUCING FACTOR LARGE SUBUNIT,DSIF LARGE COMPND 6 SUBUNIT,TAT-COTRANSACTIVATOR 1 PROTEIN,TAT-CT1 PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SUPT5H, SPT5, SPT5H; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DSIF. TRANSCRIPTION ELONGATION, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 14 AUTHOR P.K.ZUBER,K.SCHWEIMER,P.ROESCH,B.M.WOEHRL REVDAT 2 08-MAY-19 6EQY 1 REMARK REVDAT 1 17-OCT-18 6EQY 0 JRNL AUTH P.K.ZUBER,L.HAHN,A.REINL,K.SCHWEIMER,S.H.KNAUER, JRNL AUTH 2 M.E.GOTTESMAN,P.ROSCH,B.M.WOHRL JRNL TITL STRUCTURE AND NUCLEIC ACID BINDING PROPERTIES OF KOW DOMAINS JRNL TITL 2 4 AND 6-7 OF HUMAN TRANSCRIPTION ELONGATION FACTOR DSIF. JRNL REF SCI REP V. 8 11660 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 30076330 JRNL DOI 10.1038/S41598-018-30042-3 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EQY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200005691. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : 40 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-99% 13C; U-99% 15N] REMARK 210 KOW4, 20 MM SODIUM PHOSPHATE, 20 REMARK 210 MM SODIUM CHLORIDE, 0.5 MM DTT, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HNCA; 3D REMARK 210 CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D CCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 1000 MHZ REMARK 210 SPECTROMETER MODEL : AVANCEIII REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 120 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 14 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-14 REMARK 465 RES C SSSEQI REMARK 465 ALA A 2 REMARK 465 MET A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 465 THR A 7 REMARK 465 ALA A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 VAL A 11 REMARK 465 ASP A 12 REMARK 465 VAL A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LEU A 107 O PHE A 119 1.52 REMARK 500 O ASN A 45 H GLY A 48 1.55 REMARK 500 O VAL A 32 H LEU A 44 1.57 REMARK 500 O VAL A 85 H GLY A 92 1.57 REMARK 500 H LYS A 84 O VAL A 127 1.57 REMARK 500 O ASP A 81 H ILE A 97 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 17 -164.34 44.02 REMARK 500 1 ALA A 67 100.19 -49.79 REMARK 500 1 SER A 91 -177.86 -50.81 REMARK 500 1 ARG A 102 -144.63 51.19 REMARK 500 2 HIS A 17 -164.41 -114.25 REMARK 500 2 ASN A 64 73.67 -119.54 REMARK 500 2 ALA A 67 82.08 45.20 REMARK 500 2 SER A 91 133.89 -39.03 REMARK 500 2 ARG A 102 -148.02 52.03 REMARK 500 3 HIS A 17 -163.82 -113.49 REMARK 500 3 ARG A 102 -143.00 52.35 REMARK 500 4 HIS A 17 -164.07 -115.41 REMARK 500 4 VAL A 34 -34.20 -130.32 REMARK 500 4 GLU A 39 -32.37 -130.87 REMARK 500 4 MET A 46 -28.34 -39.78 REMARK 500 4 ALA A 67 89.82 -53.05 REMARK 500 4 ASP A 81 -169.47 -163.85 REMARK 500 4 ARG A 98 -61.67 -101.24 REMARK 500 4 ARG A 102 -142.71 47.83 REMARK 500 5 HIS A 17 -162.81 -103.31 REMARK 500 5 ALA A 67 91.26 -51.97 REMARK 500 5 ARG A 102 -143.19 49.85 REMARK 500 6 GLN A 28 10.91 -141.95 REMARK 500 6 ALA A 67 27.44 47.07 REMARK 500 6 ARG A 98 -61.34 -96.84 REMARK 500 7 ARG A 98 -66.01 -93.18 REMARK 500 7 ARG A 102 -83.19 -38.41 REMARK 500 8 HIS A 17 -163.87 -117.39 REMARK 500 8 ALA A 67 98.78 -52.77 REMARK 500 8 SER A 91 -170.81 -61.85 REMARK 500 8 ARG A 102 -87.25 -38.50 REMARK 500 8 SER A 103 31.23 -99.98 REMARK 500 9 HIS A 17 -164.48 -108.95 REMARK 500 9 SER A 91 154.26 -41.36 REMARK 500 9 ARG A 98 -62.02 -95.66 REMARK 500 9 ARG A 102 -143.12 50.06 REMARK 500 10 SER A 91 135.24 -39.06 REMARK 500 11 HIS A 17 -165.32 -106.71 REMARK 500 11 GLN A 28 10.98 -141.42 REMARK 500 11 ASN A 64 106.27 -174.23 REMARK 500 11 ALA A 67 91.50 49.89 REMARK 500 11 ARG A 102 -75.38 -41.35 REMARK 500 12 GLN A 28 10.28 -141.97 REMARK 500 13 HIS A 17 -162.88 -102.37 REMARK 500 13 GLU A 21 98.48 -68.21 REMARK 500 13 ARG A 102 -143.80 51.19 REMARK 500 13 LEU A 112 90.92 43.06 REMARK 500 13 ASN A 115 81.15 176.20 REMARK 500 14 HIS A 17 -163.82 -116.32 REMARK 500 14 GLN A 28 10.52 -141.76 REMARK 500 REMARK 500 THIS ENTRY HAS 61 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 35 0.21 SIDE CHAIN REMARK 500 1 ARG A 38 0.23 SIDE CHAIN REMARK 500 1 ARG A 54 0.31 SIDE CHAIN REMARK 500 1 ARG A 60 0.20 SIDE CHAIN REMARK 500 1 ARG A 65 0.23 SIDE CHAIN REMARK 500 1 ARG A 93 0.25 SIDE CHAIN REMARK 500 1 ARG A 98 0.26 SIDE CHAIN REMARK 500 1 ARG A 102 0.14 SIDE CHAIN REMARK 500 1 ARG A 124 0.31 SIDE CHAIN REMARK 500 2 ARG A 35 0.10 SIDE CHAIN REMARK 500 2 ARG A 38 0.27 SIDE CHAIN REMARK 500 2 ARG A 54 0.13 SIDE CHAIN REMARK 500 2 ARG A 60 0.29 SIDE CHAIN REMARK 500 2 ARG A 65 0.12 SIDE CHAIN REMARK 500 2 ARG A 93 0.30 SIDE CHAIN REMARK 500 2 ARG A 98 0.26 SIDE CHAIN REMARK 500 2 ARG A 102 0.30 SIDE CHAIN REMARK 500 2 ARG A 124 0.27 SIDE CHAIN REMARK 500 3 ARG A 35 0.28 SIDE CHAIN REMARK 500 3 ARG A 38 0.27 SIDE CHAIN REMARK 500 3 ARG A 54 0.14 SIDE CHAIN REMARK 500 3 ARG A 60 0.14 SIDE CHAIN REMARK 500 3 ARG A 65 0.18 SIDE CHAIN REMARK 500 3 ARG A 93 0.24 SIDE CHAIN REMARK 500 3 ARG A 98 0.21 SIDE CHAIN REMARK 500 3 ARG A 102 0.32 SIDE CHAIN REMARK 500 3 ARG A 124 0.31 SIDE CHAIN REMARK 500 4 ARG A 35 0.24 SIDE CHAIN REMARK 500 4 ARG A 38 0.30 SIDE CHAIN REMARK 500 4 ARG A 54 0.32 SIDE CHAIN REMARK 500 4 ARG A 60 0.28 SIDE CHAIN REMARK 500 4 ARG A 65 0.28 SIDE CHAIN REMARK 500 4 ARG A 93 0.31 SIDE CHAIN REMARK 500 4 ARG A 98 0.14 SIDE CHAIN REMARK 500 4 ARG A 102 0.31 SIDE CHAIN REMARK 500 4 ARG A 124 0.19 SIDE CHAIN REMARK 500 5 ARG A 35 0.30 SIDE CHAIN REMARK 500 5 ARG A 38 0.32 SIDE CHAIN REMARK 500 5 ARG A 54 0.16 SIDE CHAIN REMARK 500 5 ARG A 60 0.21 SIDE CHAIN REMARK 500 5 ARG A 65 0.12 SIDE CHAIN REMARK 500 5 ARG A 93 0.19 SIDE CHAIN REMARK 500 5 ARG A 98 0.26 SIDE CHAIN REMARK 500 5 ARG A 102 0.21 SIDE CHAIN REMARK 500 5 ARG A 124 0.18 SIDE CHAIN REMARK 500 6 ARG A 35 0.30 SIDE CHAIN REMARK 500 6 ARG A 38 0.21 SIDE CHAIN REMARK 500 6 ARG A 54 0.32 SIDE CHAIN REMARK 500 6 ARG A 60 0.21 SIDE CHAIN REMARK 500 6 ARG A 65 0.26 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 123 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34184 RELATED DB: BMRB REMARK 900 4TH KOW DOMAIN OF HUMAN HSPT5 DBREF 6EQY A 5 130 UNP O00267 SPT5H_HUMAN 522 647 SEQADV 6EQY ALA A 2 UNP O00267 EXPRESSION TAG SEQADV 6EQY MET A 3 UNP O00267 EXPRESSION TAG SEQADV 6EQY GLY A 4 UNP O00267 EXPRESSION TAG SEQRES 1 A 129 ALA MET GLY SER GLU THR ALA SER GLY VAL ASP VAL GLY SEQRES 2 A 129 GLY GLN HIS GLU TRP GLY GLU LEU VAL GLN LEU ASP PRO SEQRES 3 A 129 GLN THR VAL GLY VAL ILE VAL ARG LEU GLU ARG GLU THR SEQRES 4 A 129 PHE GLN VAL LEU ASN MET TYR GLY LYS VAL VAL THR VAL SEQRES 5 A 129 ARG HIS GLN ALA VAL THR ARG LYS LYS ASP ASN ARG PHE SEQRES 6 A 129 ALA VAL ALA LEU ASP SER GLU GLN ASN ASN ILE HIS VAL SEQRES 7 A 129 LYS ASP ILE VAL LYS VAL ILE ASP GLY PRO HIS SER GLY SEQRES 8 A 129 ARG GLU GLY GLU ILE ARG HIS LEU PHE ARG SER PHE ALA SEQRES 9 A 129 PHE LEU HIS CYS LYS LYS LEU VAL GLU ASN GLY GLY MET SEQRES 10 A 129 PHE VAL CYS LYS THR ARG HIS LEU VAL LEU ALA GLY SHEET 1 AA1 4 LEU A 22 VAL A 23 0 SHEET 2 AA1 4 GLY A 31 LEU A 36 -1 O GLY A 31 N VAL A 23 SHEET 3 AA1 4 PHE A 41 ASN A 45 -1 O LEU A 44 N VAL A 32 SHEET 4 AA1 4 LYS A 49 VAL A 53 -1 O VAL A 53 N PHE A 41 SHEET 1 AA2 2 VAL A 68 ASP A 71 0 SHEET 2 AA2 2 ASN A 75 HIS A 78 -1 O ASN A 75 N ASP A 71 SHEET 1 AA3 5 MET A 118 LYS A 122 0 SHEET 2 AA3 5 PHE A 104 HIS A 108 -1 N LEU A 107 O PHE A 119 SHEET 3 AA3 5 ARG A 93 PHE A 101 -1 N HIS A 99 O PHE A 106 SHEET 4 AA3 5 ASP A 81 VAL A 85 -1 N ASP A 81 O ILE A 97 SHEET 5 AA3 5 LEU A 126 VAL A 127 -1 O VAL A 127 N LYS A 84 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1