HEADER TRANSFERASE 18-OCT-17 6ERK TITLE CRYSTAL STRUCTURE OF DIAMINOPELARGONIC ACID AMINOTRANSFERASE FROM TITLE 2 PSYCHROBACTER CRYOHALOLENTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.6.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSYCHROBACTER CRYOHALOLENTIS K5; SOURCE 3 ORGANISM_TAXID: 335284; SOURCE 4 GENE: PCRYO_0361; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIAMINOPELARGONIC ACID, AMINOTRANSFERASE, PLP, TRANSAMINASE, KEYWDS 2 PSYCHROPHILIC, DIMER, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.BOYKO,A.Y.NIKOLAEVA,E.Y.BEZSUDNOVA,T.N.STEKHANOVA,T.V.RAKITINA, AUTHOR 2 V.O.POPOV REVDAT 3 17-JAN-24 6ERK 1 REMARK REVDAT 2 07-NOV-18 6ERK 1 JRNL REVDAT 1 26-SEP-18 6ERK 0 JRNL AUTH E.Y.BEZSUDNOVA,T.N.STEKHANOVA,A.V.POPINAKO,T.V.RAKITINA, JRNL AUTH 2 A.Y.NIKOLAEVA,K.M.BOYKO,V.O.POPOV JRNL TITL DIAMINOPELARGONIC ACID TRANSAMINASE FROM PSYCHROBACTER JRNL TITL 2 CRYOHALOLENTIS IS ACTIVE TOWARDS (S)-(-)-1-PHENYLETHYLAMINE, JRNL TITL 3 ALDEHYDES AND ALPHA-DIKETONES. JRNL REF APPL. MICROBIOL. BIOTECHNOL. V. 102 9621 2018 JRNL REFN ESSN 1432-0614 JRNL PMID 30178202 JRNL DOI 10.1007/S00253-018-9310-0 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 136275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 7082 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6402 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 742 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.72000 REMARK 3 B22 (A**2) : -4.94000 REMARK 3 B33 (A**2) : 0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.28000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.016 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.015 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.743 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6ERK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200007103. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 143372 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 70.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.83600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 1QJ5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE 0.1M PH 6.1; POTASSIUM REMARK 280 SODIUM TARTRATE 0.2M; AMMONIUM SULFATE 1.6M, LIQUID DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 91.03450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.95500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 91.03450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.95500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 ASP A -16 REMARK 465 LYS A -15 REMARK 465 ILE A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 PRO A 159 REMARK 465 ILE A 160 REMARK 465 ASN A 161 REMARK 465 GLY A 162 REMARK 465 MET A 163 REMARK 465 HIS A 164 REMARK 465 SER A 165 REMARK 465 LEU A 166 REMARK 465 TYR A 167 REMARK 465 GLY A 168 REMARK 465 ASP A 431 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 ASP B -16 REMARK 465 LYS B -15 REMARK 465 ILE B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 PRO B 159 REMARK 465 ILE B 160 REMARK 465 ASN B 161 REMARK 465 GLY B 162 REMARK 465 MET B 163 REMARK 465 HIS B 164 REMARK 465 SER B 165 REMARK 465 LEU B 166 REMARK 465 TYR B 167 REMARK 465 GLY B 168 REMARK 465 LYS B 169 REMARK 465 GLN B 170 REMARK 465 LEU B 171 REMARK 465 LYS B 430 REMARK 465 ASP B 431 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CE REMARK 470 LYS A 132 CD CE NZ REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 MET A 173 CG SD CE REMARK 470 LYS A 206 CE NZ REMARK 470 GLN A 300 CD OE1 NE2 REMARK 470 TYR A 303 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR B 3 OG1 CG2 REMARK 470 LYS B 132 CD CE NZ REMARK 470 MET B 173 CG SD CE REMARK 470 LYS B 206 CG CD CE NZ REMARK 470 TYR B 303 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE B 380 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP B 15 CG TRP B 15 CD1 0.096 REMARK 500 TYR B 18 N TYR B 18 CA 0.140 REMARK 500 ASP B 333 N ASP B 333 CA 0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 32 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 GLY A 357 C - N - CA ANGL. DEV. = 19.6 DEGREES REMARK 500 GLY A 357 C - N - CA ANGL. DEV. = 15.7 DEGREES REMARK 500 MET A 402 CG - SD - CE ANGL. DEV. = 15.8 DEGREES REMARK 500 ARG B 133 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 VAL B 156 CG1 - CB - CG2 ANGL. DEV. = -10.0 DEGREES REMARK 500 MET B 182 CG - SD - CE ANGL. DEV. = -15.1 DEGREES REMARK 500 ARG B 292 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 LEU B 317 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 ASP B 333 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG B 337 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 MET B 402 CG - SD - CE ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 54 -14.05 87.15 REMARK 500 LYS A 75 -62.35 -97.29 REMARK 500 MET A 76 133.41 -170.88 REMARK 500 ILE A 215 -48.96 73.31 REMARK 500 LYS A 276 -98.42 53.26 REMARK 500 TYR A 303 77.78 -118.16 REMARK 500 ASN A 315 121.75 -35.88 REMARK 500 SER B 20 171.77 -50.72 REMARK 500 TRP B 54 -14.32 86.89 REMARK 500 LYS B 75 -60.50 -92.96 REMARK 500 GLN B 174 -169.96 -129.99 REMARK 500 ILE B 215 -48.72 71.86 REMARK 500 LYS B 276 -99.90 51.65 REMARK 500 TYR B 303 77.30 -119.23 REMARK 500 ASN B 315 123.01 -38.19 REMARK 500 ASP B 333 69.95 65.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 963 DISTANCE = 5.84 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PLP B 501 and LYS B REMARK 800 276 DBREF 6ERK A 1 431 UNP Q1QDV8 Q1QDV8_PSYCK 1 431 DBREF 6ERK B 1 431 UNP Q1QDV8 Q1QDV8_PSYCK 1 431 SEQADV 6ERK MET A -19 UNP Q1QDV8 INITIATING METHIONINE SEQADV 6ERK GLY A -18 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK SER A -17 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK ASP A -16 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK LYS A -15 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK ILE A -14 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK HIS A -13 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK HIS A -12 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK HIS A -11 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK HIS A -10 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK HIS A -9 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK HIS A -8 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK GLU A -7 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK ASN A -6 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK LEU A -5 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK TYR A -4 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK PHE A -3 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK GLN A -2 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK GLY A -1 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK HIS A 0 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK MET B -19 UNP Q1QDV8 INITIATING METHIONINE SEQADV 6ERK GLY B -18 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK SER B -17 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK ASP B -16 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK LYS B -15 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK ILE B -14 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK HIS B -13 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK HIS B -12 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK HIS B -11 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK HIS B -10 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK HIS B -9 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK HIS B -8 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK GLU B -7 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK ASN B -6 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK LEU B -5 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK TYR B -4 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK PHE B -3 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK GLN B -2 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK GLY B -1 UNP Q1QDV8 EXPRESSION TAG SEQADV 6ERK HIS B 0 UNP Q1QDV8 EXPRESSION TAG SEQRES 1 A 451 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 451 ASN LEU TYR PHE GLN GLY HIS MET THR THR VAL SER THR SEQRES 3 A 451 ASN ASP PHE ASP GLN GLN HIS LEU TRP HIS PRO TYR ALA SEQRES 4 A 451 SER LEU PRO PRO THR TYR PRO ASN ILE VAL ILE ASP ARG SEQRES 5 A 451 ALA GLU GLY ILE TYR ILE VAL THR GLU ASP GLY THR ARG SEQRES 6 A 451 LEU ILE ASP GLY MET SER SER TRP TRP ALA SER VAL HIS SEQRES 7 A 451 GLY TYR ASN HIS PRO LYS LEU ASN ALA ALA MET ILE GLU SEQRES 8 A 451 GLN LEU GLY LYS MET ALA HIS VAL MET PHE GLY GLY LEU SEQRES 9 A 451 THR HIS GLN PRO ALA ILE ASP LEU GLY LYS LYS LEU LEU SEQRES 10 A 451 SER ILE VAL PRO ALA GLY LEU ASP ALA ILE PHE TYR ALA SEQRES 11 A 451 ASP SER GLY SER ILE ALA VAL GLU VAL ALA LEU LYS MET SEQRES 12 A 451 ALA LEU GLN TYR GLN ILE ALA ALA LYS ARG PRO SER LYS SEQRES 13 A 451 CYS GLN PHE ALA SER THR HIS SER GLY TYR TYR GLY ASP SEQRES 14 A 451 THR TRP HIS ALA MET SER VAL CYS ASP PRO ILE ASN GLY SEQRES 15 A 451 MET HIS SER LEU TYR GLY LYS GLN LEU PRO MET GLN HIS SEQRES 16 A 451 PHE VAL ALA ALA PRO PRO MET GLY PHE GLU ARG ASP LEU SEQRES 17 A 451 THR GLN SER GLU ARG GLU ALA LEU THR GLU PHE PHE VAL SEQRES 18 A 451 LYS ASN SER ASP LYS LEU ALA GLY PHE ILE ILE GLU PRO SEQRES 19 A 451 ILE ILE GLN GLY ALA GLY GLY MET ARG PHE TYR SER PRO SEQRES 20 A 451 GLN TYR LEU GLN LEU LEU ARG LYS LEU CYS ASP GLU TYR SEQRES 21 A 451 ASP VAL LEU LEU ILE ALA ASP GLU ILE ALA THR GLY PHE SEQRES 22 A 451 GLY ARG SER GLY LYS LEU PHE ALA CYS GLU HIS ALA ALA SEQRES 23 A 451 ILE SER PRO ASP ILE MET THR ILE GLY LYS ALA LEU THR SEQRES 24 A 451 GLY GLY TYR MET THR PHE ALA ALA THR LEU SER THR ARG SEQRES 25 A 451 GLU ILE ALA ASP THR ILE SER GLN SER ASP TYR PRO ALA SEQRES 26 A 451 LEU MET HIS GLY PRO THR PHE MET GLY ASN PRO LEU ALA SEQRES 27 A 451 CYS ALA VAL ALA CYS ALA SER ILE ASP LEU ILE VAL SER SEQRES 28 A 451 TYR ASP ILE GLU ALA ARG THR GLU ASN MET GLN ALA ILE SEQRES 29 A 451 MET ASN GLU GLN LEU ALA PRO ALA VAL SER LEU GLU GLY SEQRES 30 A 451 VAL LYS GLU VAL ARG CYS LEU GLY ALA VAL ALA VAL ILE SEQRES 31 A 451 GLU LEU ASN GLU ALA VAL ASP MET PRO ILE PHE GLN THR SEQRES 32 A 451 LEU LEU ILE ASN ASN GLY ILE TRP VAL ARG PRO PHE GLY SEQRES 33 A 451 LYS LEU VAL TYR ILE MET PRO PRO TYR VAL ILE THR ASP SEQRES 34 A 451 ASP GLU LEU THR THR LEU CYS GLN ALA LEU LEU LYS VAL SEQRES 35 A 451 VAL SER SER TYR LEU THR ARG LYS ASP SEQRES 1 B 451 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 B 451 ASN LEU TYR PHE GLN GLY HIS MET THR THR VAL SER THR SEQRES 3 B 451 ASN ASP PHE ASP GLN GLN HIS LEU TRP HIS PRO TYR ALA SEQRES 4 B 451 SER LEU PRO PRO THR TYR PRO ASN ILE VAL ILE ASP ARG SEQRES 5 B 451 ALA GLU GLY ILE TYR ILE VAL THR GLU ASP GLY THR ARG SEQRES 6 B 451 LEU ILE ASP GLY MET SER SER TRP TRP ALA SER VAL HIS SEQRES 7 B 451 GLY TYR ASN HIS PRO LYS LEU ASN ALA ALA MET ILE GLU SEQRES 8 B 451 GLN LEU GLY LYS MET ALA HIS VAL MET PHE GLY GLY LEU SEQRES 9 B 451 THR HIS GLN PRO ALA ILE ASP LEU GLY LYS LYS LEU LEU SEQRES 10 B 451 SER ILE VAL PRO ALA GLY LEU ASP ALA ILE PHE TYR ALA SEQRES 11 B 451 ASP SER GLY SER ILE ALA VAL GLU VAL ALA LEU LYS MET SEQRES 12 B 451 ALA LEU GLN TYR GLN ILE ALA ALA LYS ARG PRO SER LYS SEQRES 13 B 451 CYS GLN PHE ALA SER THR HIS SER GLY TYR TYR GLY ASP SEQRES 14 B 451 THR TRP HIS ALA MET SER VAL CYS ASP PRO ILE ASN GLY SEQRES 15 B 451 MET HIS SER LEU TYR GLY LYS GLN LEU PRO MET GLN HIS SEQRES 16 B 451 PHE VAL ALA ALA PRO PRO MET GLY PHE GLU ARG ASP LEU SEQRES 17 B 451 THR GLN SER GLU ARG GLU ALA LEU THR GLU PHE PHE VAL SEQRES 18 B 451 LYS ASN SER ASP LYS LEU ALA GLY PHE ILE ILE GLU PRO SEQRES 19 B 451 ILE ILE GLN GLY ALA GLY GLY MET ARG PHE TYR SER PRO SEQRES 20 B 451 GLN TYR LEU GLN LEU LEU ARG LYS LEU CYS ASP GLU TYR SEQRES 21 B 451 ASP VAL LEU LEU ILE ALA ASP GLU ILE ALA THR GLY PHE SEQRES 22 B 451 GLY ARG SER GLY LYS LEU PHE ALA CYS GLU HIS ALA ALA SEQRES 23 B 451 ILE SER PRO ASP ILE MET THR ILE GLY LYS ALA LEU THR SEQRES 24 B 451 GLY GLY TYR MET THR PHE ALA ALA THR LEU SER THR ARG SEQRES 25 B 451 GLU ILE ALA ASP THR ILE SER GLN SER ASP TYR PRO ALA SEQRES 26 B 451 LEU MET HIS GLY PRO THR PHE MET GLY ASN PRO LEU ALA SEQRES 27 B 451 CYS ALA VAL ALA CYS ALA SER ILE ASP LEU ILE VAL SER SEQRES 28 B 451 TYR ASP ILE GLU ALA ARG THR GLU ASN MET GLN ALA ILE SEQRES 29 B 451 MET ASN GLU GLN LEU ALA PRO ALA VAL SER LEU GLU GLY SEQRES 30 B 451 VAL LYS GLU VAL ARG CYS LEU GLY ALA VAL ALA VAL ILE SEQRES 31 B 451 GLU LEU ASN GLU ALA VAL ASP MET PRO ILE PHE GLN THR SEQRES 32 B 451 LEU LEU ILE ASN ASN GLY ILE TRP VAL ARG PRO PHE GLY SEQRES 33 B 451 LYS LEU VAL TYR ILE MET PRO PRO TYR VAL ILE THR ASP SEQRES 34 B 451 ASP GLU LEU THR THR LEU CYS GLN ALA LEU LEU LYS VAL SEQRES 35 B 451 VAL SER SER TYR LEU THR ARG LYS ASP HET SO4 A 501 5 HET EDO A 502 4 HET GOL A 503 6 HET PLP A 504 15 HET PLP B 501 15 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 SO4 O4 S 2- FORMUL 4 EDO C2 H6 O2 FORMUL 5 GOL C3 H8 O3 FORMUL 6 PLP 2(C8 H10 N O6 P) FORMUL 8 HOH *742(H2 O) HELIX 1 AA1 ASN A 7 LEU A 14 1 8 HELIX 2 AA2 MET A 50 ALA A 55 1 6 HELIX 3 AA3 HIS A 62 GLY A 74 1 13 HELIX 4 AA4 GLN A 87 VAL A 100 1 14 HELIX 5 AA5 SER A 112 ALA A 131 1 20 HELIX 6 AA6 THR A 150 SER A 155 1 6 HELIX 7 AA7 THR A 189 SER A 204 1 16 HELIX 8 AA8 SER A 226 TYR A 240 1 15 HELIX 9 AA9 PHE A 260 ALA A 265 5 6 HELIX 10 AB1 GLY A 275 GLY A 280 5 6 HELIX 11 AB2 ARG A 292 GLN A 300 1 9 HELIX 12 AB3 ASN A 315 TYR A 332 1 18 HELIX 13 AB4 ASP A 333 ALA A 350 1 18 HELIX 14 AB5 PRO A 351 LEU A 355 5 5 HELIX 15 AB6 ASP A 377 ILE A 386 1 10 HELIX 16 AB7 THR A 408 LYS A 430 1 23 HELIX 17 AB8 ASN B 7 LEU B 14 1 8 HELIX 18 AB9 MET B 50 ALA B 55 1 6 HELIX 19 AC1 HIS B 62 GLY B 74 1 13 HELIX 20 AC2 GLN B 87 VAL B 100 1 14 HELIX 21 AC3 SER B 112 ALA B 131 1 20 HELIX 22 AC4 THR B 150 SER B 155 1 6 HELIX 23 AC5 THR B 189 SER B 204 1 16 HELIX 24 AC6 SER B 226 ASP B 241 1 16 HELIX 25 AC7 PHE B 260 ALA B 265 5 6 HELIX 26 AC8 GLY B 275 GLY B 280 5 6 HELIX 27 AC9 ARG B 292 GLN B 300 1 9 HELIX 28 AD1 ASN B 315 TYR B 332 1 18 HELIX 29 AD2 ASP B 333 ALA B 350 1 18 HELIX 30 AD3 PRO B 351 LEU B 355 5 5 HELIX 31 AD4 ASP B 377 THR B 383 1 7 HELIX 32 AD5 LEU B 384 ASN B 388 5 5 HELIX 33 AD6 THR B 408 LEU B 427 1 20 SHEET 1 AA1 5 ILE A 390 TRP A 391 0 SHEET 2 AA1 5 ARG A 45 ASP A 48 1 N ILE A 47 O TRP A 391 SHEET 3 AA1 5 TYR A 37 THR A 40 -1 N ILE A 38 O LEU A 46 SHEET 4 AA1 5 ILE A 28 GLU A 34 -1 N ARG A 32 O VAL A 39 SHEET 5 AA1 5 LEU B 84 HIS B 86 1 O THR B 85 N ILE A 30 SHEET 1 AA2 5 LEU A 84 HIS A 86 0 SHEET 2 AA2 5 ILE B 28 GLU B 34 1 O ILE B 30 N THR A 85 SHEET 3 AA2 5 TYR B 37 THR B 40 -1 O VAL B 39 N ARG B 32 SHEET 4 AA2 5 ARG B 45 ASP B 48 -1 O LEU B 46 N ILE B 38 SHEET 5 AA2 5 ILE B 390 TRP B 391 1 O TRP B 391 N ILE B 47 SHEET 1 AA3 7 LEU A 104 ALA A 110 0 SHEET 2 AA3 7 ALA A 286 THR A 291 -1 O SER A 290 N ASP A 105 SHEET 3 AA3 7 ILE A 271 ILE A 274 -1 N MET A 272 O LEU A 289 SHEET 4 AA3 7 LEU A 243 ASP A 247 1 N ALA A 246 O ILE A 271 SHEET 5 AA3 7 LEU A 207 ILE A 212 1 N PHE A 210 O ILE A 245 SHEET 6 AA3 7 GLN A 138 THR A 142 1 N GLN A 138 O ALA A 208 SHEET 7 AA3 7 HIS A 175 VAL A 177 1 O HIS A 175 N PHE A 139 SHEET 1 AA4 2 ILE A 216 GLN A 217 0 SHEET 2 AA4 2 ARG A 223 PHE A 224 -1 O ARG A 223 N GLN A 217 SHEET 1 AA5 3 VAL A 358 LEU A 364 0 SHEET 2 AA5 3 VAL A 367 LEU A 372 -1 O VAL A 369 N ARG A 362 SHEET 3 AA5 3 LEU A 398 ILE A 401 -1 O VAL A 399 N ILE A 370 SHEET 1 AA6 7 LEU B 104 ALA B 110 0 SHEET 2 AA6 7 ALA B 286 THR B 291 -1 O SER B 290 N ASP B 105 SHEET 3 AA6 7 ILE B 271 ILE B 274 -1 N MET B 272 O LEU B 289 SHEET 4 AA6 7 LEU B 243 ASP B 247 1 N ALA B 246 O ILE B 271 SHEET 5 AA6 7 LEU B 207 ILE B 212 1 N PHE B 210 O ILE B 245 SHEET 6 AA6 7 GLN B 138 THR B 142 1 N GLN B 138 O ALA B 208 SHEET 7 AA6 7 HIS B 175 VAL B 177 1 O HIS B 175 N PHE B 139 SHEET 1 AA7 2 ILE B 216 GLN B 217 0 SHEET 2 AA7 2 ARG B 223 PHE B 224 -1 O ARG B 223 N GLN B 217 SHEET 1 AA8 3 VAL B 358 LEU B 364 0 SHEET 2 AA8 3 VAL B 367 LEU B 372 -1 O GLU B 371 N GLU B 360 SHEET 3 AA8 3 LEU B 398 ILE B 401 -1 O VAL B 399 N ILE B 370 LINK NZ LYS A 276 C4A PLP A 504 1555 1555 1.32 LINK NZ LYS B 276 C4A PLP B 501 1555 1555 1.30 CISPEP 1 LEU A 21 PRO A 22 0 -2.46 CISPEP 2 LEU B 21 PRO B 22 0 -8.06 SITE 1 AC1 5 TYR A 332 ASP A 333 ARG A 337 HOH A 632 SITE 2 AC1 5 HOH A 638 SITE 1 AC2 6 LYS A 94 HOH A 767 ASN B 7 ASP B 8 SITE 2 AC2 6 PHE B 9 HOH B 807 SITE 1 AC3 5 ARG A 337 VAL A 406 HOH A 605 HOH A 639 SITE 2 AC3 5 HOH A 838 SITE 1 AC4 14 GLY A 113 SER A 114 TYR A 146 TYR A 147 SITE 2 AC4 14 GLU A 213 ASP A 247 ILE A 249 ALA A 250 SITE 3 AC4 14 LYS A 276 HOH A 618 HOH A 749 THR B 311 SITE 4 AC4 14 HOH B 603 HOH B 608 SITE 1 AC5 22 THR A 311 HOH A 633 TRP B 53 ALA B 55 SITE 2 AC5 22 GLY B 113 SER B 114 TYR B 146 TYR B 147 SITE 3 AC5 22 GLY B 148 ASP B 247 ILE B 249 ALA B 250 SITE 4 AC5 22 GLY B 275 ALA B 277 LEU B 278 THR B 279 SITE 5 AC5 22 GLY B 281 HOH B 618 HOH B 619 HOH B 662 SITE 6 AC5 22 HOH B 763 HOH B 799 CRYST1 182.069 67.910 118.070 90.00 128.81 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005492 0.000000 0.004418 0.00000 SCALE2 0.000000 0.014725 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010869 0.00000