HEADER FLAVOPROTEIN 19-OCT-17 6ES9 TITLE METHYLSUCCINYL-COA DEHYDROGENASE OF PARACOCCUS DENITRIFICANS WITH TITLE 2 BOUND FLAVIN ADENINE DINUCLEOTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-COA DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.3.8.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARACOCCUS DENITRIFICANS (STRAIN PD 1222); SOURCE 3 ORGANISM_TAXID: 318586; SOURCE 4 STRAIN: PD 1222; SOURCE 5 GENE: PDEN_2840; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTE849 KEYWDS METHYLSUCCINYL-COA, ACYL-COA DEHYDROGENASE, FLAVIN ADENINE KEYWDS 2 DINUCLEOTIDE, ETHYLMALONYL-COA PATHWAY, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.ZARZYCKI,T.SCHWANDER,T.J.ERB REVDAT 4 17-JAN-24 6ES9 1 REMARK REVDAT 3 13-JUL-22 6ES9 1 AUTHOR REVDAT 2 14-FEB-18 6ES9 1 JRNL REVDAT 1 03-JAN-18 6ES9 0 JRNL AUTH T.SCHWANDER,R.MCLEAN,J.ZARZYCKI,T.J.ERB JRNL TITL STRUCTURAL BASIS FOR SUBSTRATE SPECIFICITY OF JRNL TITL 2 METHYLSUCCINYL-COA DEHYDROGENASE, AN UNUSUAL MEMBER OF THE JRNL TITL 3 ACYL-COA DEHYDROGENASE FAMILY. JRNL REF J. BIOL. CHEM. V. 293 1702 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29275330 JRNL DOI 10.1074/JBC.RA117.000764 REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 249828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 0.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 17.5743 - 3.2951 1.00 18339 148 0.1658 0.1656 REMARK 3 2 3.2951 - 2.6182 1.00 17930 144 0.1765 0.1857 REMARK 3 3 2.6182 - 2.2881 1.00 17793 145 0.1814 0.1842 REMARK 3 4 2.2881 - 2.0792 1.00 17738 142 0.1710 0.1903 REMARK 3 5 2.0792 - 1.9304 1.00 17703 144 0.1680 0.1704 REMARK 3 6 1.9304 - 1.8167 1.00 17618 142 0.1599 0.1948 REMARK 3 7 1.8167 - 1.7258 1.00 17653 142 0.1594 0.1756 REMARK 3 8 1.7258 - 1.6508 1.00 17666 142 0.1648 0.1930 REMARK 3 9 1.6508 - 1.5872 1.00 17582 142 0.1704 0.1676 REMARK 3 10 1.5872 - 1.5325 1.00 17564 142 0.1858 0.2051 REMARK 3 11 1.5325 - 1.4846 1.00 17565 142 0.2019 0.1955 REMARK 3 12 1.4846 - 1.4422 1.00 17580 142 0.2267 0.2563 REMARK 3 13 1.4422 - 1.4042 1.00 17493 141 0.2547 0.2620 REMARK 3 14 1.4042 - 1.3700 1.00 17604 142 0.2755 0.2832 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 8725 REMARK 3 ANGLE : 1.405 11848 REMARK 3 CHIRALITY : 0.098 1298 REMARK 3 PLANARITY : 0.010 1535 REMARK 3 DIHEDRAL : 20.516 3184 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 9.0776 0.3976 -14.9819 REMARK 3 T TENSOR REMARK 3 T11: 0.1000 T22: 0.1013 REMARK 3 T33: 0.1373 T12: -0.0012 REMARK 3 T13: 0.0039 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.1067 L22: 0.1704 REMARK 3 L33: 0.4125 L12: 0.0334 REMARK 3 L13: -0.0205 L23: 0.0340 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: 0.0036 S13: 0.0330 REMARK 3 S21: 0.0024 S22: 0.0081 S23: 0.0133 REMARK 3 S31: -0.0081 S32: -0.0392 S33: -0.0142 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ES9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200007173. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979026 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : TRUNCATE REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 249985 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 17.573 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 1.10300 REMARK 200 R SYM FOR SHELL (I) : 1.10300 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4N5F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 PART PROTEIN SOLUTION (20.0 MG/ML IN REMARK 280 20 MM TRIS-HCL, PH 7.9, 200 MM SODIUM CHLORIDE, 1.5 MM FAD, 3 MM REMARK 280 MESACONYL-COA) + 1 PART BUFFER (0.1 M TRIS-HCL, PH 8.0, 30% W/V REMARK 280 PEG5000 MME, 200 MM LITHIUM SULFATE), VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.79800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.46950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.59650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.46950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.79800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.59650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ASP A 3 REMARK 465 MET A 4 REMARK 465 PRO A 5 REMARK 465 ALA A 6 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ASP B 3 REMARK 465 MET B 4 REMARK 465 PRO B 5 REMARK 465 ALA B 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 21 O HOH B 701 2.10 REMARK 500 O HOH B 1246 O HOH B 1313 2.11 REMARK 500 O HOH A 1092 O HOH A 1231 2.11 REMARK 500 OE1 GLU B 352 O HOH B 702 2.12 REMARK 500 OE1 GLU A 352 O HOH A 701 2.12 REMARK 500 O HOH A 1323 O HOH A 1369 2.13 REMARK 500 O HOH A 1164 O HOH A 1246 2.13 REMARK 500 O TYR B 519 O HOH B 703 2.14 REMARK 500 OG1 THR A 217 OE1 GLU A 254 2.14 REMARK 500 O HOH B 1073 O HOH B 1151 2.14 REMARK 500 O HOH B 1240 O HOH B 1283 2.16 REMARK 500 OE1 GLU A 210 O HOH A 702 2.16 REMARK 500 O HOH B 709 O HOH B 1186 2.16 REMARK 500 O HOH A 901 O HOH A 904 2.17 REMARK 500 O HOH A 720 O HOH A 1172 2.17 REMARK 500 OE2 GLU B 254 O HOH B 704 2.18 REMARK 500 O HOH A 905 O HOH A 959 2.18 REMARK 500 O HOH A 825 O HOH A 1370 2.19 REMARK 500 O HOH B 1071 O HOH B 1214 2.19 REMARK 500 O HOH A 765 O HOH B 921 2.19 REMARK 500 OE2 GLU A 35 O HOH A 703 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 254 N GLU B 254 CA 0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 81 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 81 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 38 NE - CZ - NH1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG B 38 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 73 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 81 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 120 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 333 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 468 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 468 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 PHE B 515 CB - CG - CD2 ANGL. DEV. = 4.2 DEGREES REMARK 500 PHE B 534 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 379 157.37 67.32 REMARK 500 CYS A 484 26.23 -149.34 REMARK 500 ILE A 533 -46.89 -134.69 REMARK 500 VAL B 186 -61.47 -104.25 REMARK 500 LYS B 379 157.45 62.20 REMARK 500 CYS B 484 24.55 -148.18 REMARK 500 ILE B 533 -48.58 -133.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1409 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1410 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A1411 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A1412 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH B1376 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B1377 DISTANCE = 6.69 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 COA A 603 REMARK 610 COA B 603 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 604 DBREF 6ES9 A 1 551 UNP A1B5Y0 A1B5Y0_PARDP 1 551 DBREF 6ES9 B 1 551 UNP A1B5Y0 A1B5Y0_PARDP 1 551 SEQRES 1 A 551 MET LYS ASP MET PRO ALA MET PRO ALA ASP THR PRO SER SEQRES 2 A 551 ALA LEU LEU ALA LEU ALA GLY GLU ALA LEU PRO GLU LEU SEQRES 3 A 551 GLU SER LEU GLN SER ARG ALA THR GLU ALA LEU ARG ALA SEQRES 4 A 551 LEU VAL ALA PRO ALA GLY LYS PRO GLN PRO ALA LEU LEU SEQRES 5 A 551 GLU GLN HIS GLN HIS ALA ALA HIS ALA LEU SER TRP LEU SEQRES 6 A 551 THR THR TYR VAL GLU SER ILE ARG GLN LEU SER GLY TRP SEQRES 7 A 551 ALA GLY ARG LEU ALA GLU ALA GLY ASN LEU GLY ARG ILE SEQRES 8 A 551 GLU ALA LEU ILE LEU GLN ILE GLY LEU GLY GLU TYR LEU SEQRES 9 A 551 GLY GLN ILE ALA GLY GLY ILE PRO MET SER GLN THR GLU SEQRES 10 A 551 PHE ALA ARG LEU SER ASP LEU GLU LEU ASP TRP GLN PRO SEQRES 11 A 551 GLY GLU ALA ALA ALA LYS LEU MET ARG GLY ASN THR ALA SEQRES 12 A 551 PRO ALA ARG ALA GLU LEU ALA ARG LEU MET GLN ASP ASN SEQRES 13 A 551 HIS GLY ARG ALA THR PHE GLY ALA THR GLY LEU ASP GLU SEQRES 14 A 551 ASP LEU GLU MET ILE ARG ASP GLN PHE ARG ARG TYR ALA SEQRES 15 A 551 GLU GLU ARG VAL ILE PRO ASN ALA HIS GLU TRP HIS LEU SEQRES 16 A 551 LYS ASP GLN LEU ILE PRO MET GLU ILE ILE GLU GLU LEU SEQRES 17 A 551 ALA GLU LEU GLY VAL PHE GLY LEU THR ILE PRO GLU GLU SEQRES 18 A 551 PHE GLY GLY LEU GLY LEU SER LYS ALA SER MET VAL VAL SEQRES 19 A 551 VAL THR GLU GLU LEU SER ARG GLY TYR ILE GLY VAL GLY SEQRES 20 A 551 SER LEU GLY THR ARG SER GLU ILE ALA ALA GLU LEU ILE SEQRES 21 A 551 LEU CYS GLY GLY THR GLU ALA GLN LYS ALA LYS TRP LEU SEQRES 22 A 551 PRO GLY LEU ALA SER GLY GLU ILE LEU SER THR ALA VAL SEQRES 23 A 551 PHE THR GLU PRO ASN THR GLY SER ASP LEU GLY SER LEU SEQRES 24 A 551 ARG THR ARG ALA VAL ARG ASP GLY GLU ASP TRP VAL VAL SEQRES 25 A 551 THR GLY ASN LYS THR TRP ILE THR HIS ALA GLN ARG THR SEQRES 26 A 551 HIS VAL MET THR LEU LEU ALA ARG THR ASP PRO GLU THR SEQRES 27 A 551 THR ASP TRP ARG GLY LEU SER MET PHE LEU ALA GLU LYS SEQRES 28 A 551 GLU PRO GLY THR ASP ASP ASP PRO PHE PRO THR PRO GLY SEQRES 29 A 551 MET THR GLY GLY GLU ILE GLU VAL LEU GLY TYR ARG GLY SEQRES 30 A 551 MET LYS GLU TYR GLU LEU GLY PHE ASP GLY PHE ARG ILE SEQRES 31 A 551 LYS GLY GLU ASN LEU LEU GLY GLY GLU PRO GLY ARG GLY SEQRES 32 A 551 PHE LYS GLN LEU MET GLU THR PHE GLU SER ALA ARG ILE SEQRES 33 A 551 GLN THR ALA ALA ARG ALA VAL GLY VAL ALA GLN SER ALA SEQRES 34 A 551 ALA GLU ILE GLY MET ARG TYR ALA VAL ASP ARG LYS GLN SEQRES 35 A 551 PHE GLY LYS SER LEU ILE GLU PHE PRO ARG VAL ALA ASP SEQRES 36 A 551 LYS LEU ALA MET MET ALA VAL GLU ILE MET ILE ALA ARG SEQRES 37 A 551 GLN LEU THR TYR PHE SER ALA TRP GLU LYS ASP HIS GLY SEQRES 38 A 551 ARG ARG CYS ASP LEU GLU ALA GLY MET ALA LYS LEU LEU SEQRES 39 A 551 GLY ALA ARG VAL ALA TRP ALA ALA ALA ASP ASN ALA LEU SEQRES 40 A 551 GLN ILE HIS GLY GLY ASN GLY PHE ALA LEU GLU TYR ALA SEQRES 41 A 551 ILE SER ARG VAL LEU CYS ASP ALA ARG ILE LEU ASN ILE SEQRES 42 A 551 PHE GLU GLY ALA ALA GLU ILE GLN ALA GLN VAL ILE ALA SEQRES 43 A 551 ARG ARG LEU LEU ASP SEQRES 1 B 551 MET LYS ASP MET PRO ALA MET PRO ALA ASP THR PRO SER SEQRES 2 B 551 ALA LEU LEU ALA LEU ALA GLY GLU ALA LEU PRO GLU LEU SEQRES 3 B 551 GLU SER LEU GLN SER ARG ALA THR GLU ALA LEU ARG ALA SEQRES 4 B 551 LEU VAL ALA PRO ALA GLY LYS PRO GLN PRO ALA LEU LEU SEQRES 5 B 551 GLU GLN HIS GLN HIS ALA ALA HIS ALA LEU SER TRP LEU SEQRES 6 B 551 THR THR TYR VAL GLU SER ILE ARG GLN LEU SER GLY TRP SEQRES 7 B 551 ALA GLY ARG LEU ALA GLU ALA GLY ASN LEU GLY ARG ILE SEQRES 8 B 551 GLU ALA LEU ILE LEU GLN ILE GLY LEU GLY GLU TYR LEU SEQRES 9 B 551 GLY GLN ILE ALA GLY GLY ILE PRO MET SER GLN THR GLU SEQRES 10 B 551 PHE ALA ARG LEU SER ASP LEU GLU LEU ASP TRP GLN PRO SEQRES 11 B 551 GLY GLU ALA ALA ALA LYS LEU MET ARG GLY ASN THR ALA SEQRES 12 B 551 PRO ALA ARG ALA GLU LEU ALA ARG LEU MET GLN ASP ASN SEQRES 13 B 551 HIS GLY ARG ALA THR PHE GLY ALA THR GLY LEU ASP GLU SEQRES 14 B 551 ASP LEU GLU MET ILE ARG ASP GLN PHE ARG ARG TYR ALA SEQRES 15 B 551 GLU GLU ARG VAL ILE PRO ASN ALA HIS GLU TRP HIS LEU SEQRES 16 B 551 LYS ASP GLN LEU ILE PRO MET GLU ILE ILE GLU GLU LEU SEQRES 17 B 551 ALA GLU LEU GLY VAL PHE GLY LEU THR ILE PRO GLU GLU SEQRES 18 B 551 PHE GLY GLY LEU GLY LEU SER LYS ALA SER MET VAL VAL SEQRES 19 B 551 VAL THR GLU GLU LEU SER ARG GLY TYR ILE GLY VAL GLY SEQRES 20 B 551 SER LEU GLY THR ARG SER GLU ILE ALA ALA GLU LEU ILE SEQRES 21 B 551 LEU CYS GLY GLY THR GLU ALA GLN LYS ALA LYS TRP LEU SEQRES 22 B 551 PRO GLY LEU ALA SER GLY GLU ILE LEU SER THR ALA VAL SEQRES 23 B 551 PHE THR GLU PRO ASN THR GLY SER ASP LEU GLY SER LEU SEQRES 24 B 551 ARG THR ARG ALA VAL ARG ASP GLY GLU ASP TRP VAL VAL SEQRES 25 B 551 THR GLY ASN LYS THR TRP ILE THR HIS ALA GLN ARG THR SEQRES 26 B 551 HIS VAL MET THR LEU LEU ALA ARG THR ASP PRO GLU THR SEQRES 27 B 551 THR ASP TRP ARG GLY LEU SER MET PHE LEU ALA GLU LYS SEQRES 28 B 551 GLU PRO GLY THR ASP ASP ASP PRO PHE PRO THR PRO GLY SEQRES 29 B 551 MET THR GLY GLY GLU ILE GLU VAL LEU GLY TYR ARG GLY SEQRES 30 B 551 MET LYS GLU TYR GLU LEU GLY PHE ASP GLY PHE ARG ILE SEQRES 31 B 551 LYS GLY GLU ASN LEU LEU GLY GLY GLU PRO GLY ARG GLY SEQRES 32 B 551 PHE LYS GLN LEU MET GLU THR PHE GLU SER ALA ARG ILE SEQRES 33 B 551 GLN THR ALA ALA ARG ALA VAL GLY VAL ALA GLN SER ALA SEQRES 34 B 551 ALA GLU ILE GLY MET ARG TYR ALA VAL ASP ARG LYS GLN SEQRES 35 B 551 PHE GLY LYS SER LEU ILE GLU PHE PRO ARG VAL ALA ASP SEQRES 36 B 551 LYS LEU ALA MET MET ALA VAL GLU ILE MET ILE ALA ARG SEQRES 37 B 551 GLN LEU THR TYR PHE SER ALA TRP GLU LYS ASP HIS GLY SEQRES 38 B 551 ARG ARG CYS ASP LEU GLU ALA GLY MET ALA LYS LEU LEU SEQRES 39 B 551 GLY ALA ARG VAL ALA TRP ALA ALA ALA ASP ASN ALA LEU SEQRES 40 B 551 GLN ILE HIS GLY GLY ASN GLY PHE ALA LEU GLU TYR ALA SEQRES 41 B 551 ILE SER ARG VAL LEU CYS ASP ALA ARG ILE LEU ASN ILE SEQRES 42 B 551 PHE GLU GLY ALA ALA GLU ILE GLN ALA GLN VAL ILE ALA SEQRES 43 B 551 ARG ARG LEU LEU ASP HET SO4 A 601 5 HET SO4 A 602 5 HET COA A 603 27 HET FAD A 604 53 HET SO4 B 601 5 HET SO4 B 602 5 HET COA B 603 27 HET FAD B 604 53 HETNAM SO4 SULFATE ION HETNAM COA COENZYME A HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 SO4 4(O4 S 2-) FORMUL 5 COA 2(C21 H36 N7 O16 P3 S) FORMUL 6 FAD 2(C27 H33 N9 O15 P2) FORMUL 11 HOH *1389(H2 O) HELIX 1 AA1 THR A 11 ALA A 42 1 32 HELIX 2 AA2 GLN A 48 HIS A 55 1 8 HELIX 3 AA3 HIS A 55 ALA A 85 1 31 HELIX 4 AA4 GLY A 89 GLY A 110 1 22 HELIX 5 AA5 ARG A 120 GLU A 125 5 6 HELIX 6 AA6 GLY A 131 ARG A 139 1 9 HELIX 7 AA7 THR A 142 GLN A 154 1 13 HELIX 8 AA8 ASP A 168 VAL A 186 1 19 HELIX 9 AA9 ASN A 189 LYS A 196 1 8 HELIX 10 AB1 PRO A 201 LEU A 211 1 11 HELIX 11 AB2 GLY A 212 LEU A 216 5 5 HELIX 12 AB3 PRO A 219 GLY A 223 5 5 HELIX 13 AB4 SER A 228 TYR A 243 1 16 HELIX 14 AB5 TYR A 243 GLY A 264 1 22 HELIX 15 AB6 THR A 265 SER A 278 1 14 HELIX 16 AB7 ASP A 295 LEU A 299 5 5 HELIX 17 AB8 ASP A 340 ARG A 342 5 3 HELIX 18 AB9 LYS A 391 LEU A 395 5 5 HELIX 19 AC1 ARG A 402 GLU A 409 1 8 HELIX 20 AC2 THR A 410 ARG A 440 1 31 HELIX 21 AC3 PHE A 450 HIS A 480 1 31 HELIX 22 AC4 CYS A 484 GLY A 511 1 28 HELIX 23 AC5 GLY A 512 ALA A 516 5 5 HELIX 24 AC6 TYR A 519 ILE A 530 1 12 HELIX 25 AC7 LEU A 531 ILE A 533 5 3 HELIX 26 AC8 ALA A 537 ASP A 551 1 15 HELIX 27 AC9 MET B 7 ASP B 10 5 4 HELIX 28 AD1 THR B 11 ALA B 42 1 32 HELIX 29 AD2 GLN B 48 HIS B 55 1 8 HELIX 30 AD3 HIS B 55 ALA B 85 1 31 HELIX 31 AD4 GLY B 89 GLY B 110 1 22 HELIX 32 AD5 ARG B 120 GLU B 125 5 6 HELIX 33 AD6 GLY B 131 MET B 138 1 8 HELIX 34 AD7 THR B 142 ASP B 155 1 14 HELIX 35 AD8 ASP B 168 VAL B 186 1 19 HELIX 36 AD9 ASN B 189 LYS B 196 1 8 HELIX 37 AE1 PRO B 201 LEU B 211 1 11 HELIX 38 AE2 GLY B 212 LEU B 216 5 5 HELIX 39 AE3 PRO B 219 GLY B 223 5 5 HELIX 40 AE4 SER B 228 TYR B 243 1 16 HELIX 41 AE5 TYR B 243 GLY B 264 1 22 HELIX 42 AE6 THR B 265 SER B 278 1 14 HELIX 43 AE7 ASP B 295 LEU B 299 5 5 HELIX 44 AE8 ASP B 340 ARG B 342 5 3 HELIX 45 AE9 LYS B 391 LEU B 395 5 5 HELIX 46 AF1 ARG B 402 GLU B 409 1 8 HELIX 47 AF2 THR B 410 ARG B 440 1 31 HELIX 48 AF3 PHE B 450 HIS B 480 1 31 HELIX 49 AF4 CYS B 484 GLY B 511 1 28 HELIX 50 AF5 GLY B 512 ALA B 516 5 5 HELIX 51 AF6 TYR B 519 ILE B 530 1 12 HELIX 52 AF7 LEU B 531 ILE B 533 5 3 HELIX 53 AF8 ALA B 537 ASP B 551 1 15 SHEET 1 AA1 2 ILE A 111 PRO A 112 0 SHEET 2 AA1 2 PHE A 118 ALA A 119 -1 O ALA A 119 N ILE A 111 SHEET 1 AA2 3 SER A 283 VAL A 286 0 SHEET 2 AA2 3 VAL A 327 ARG A 333 1 O THR A 329 N THR A 284 SHEET 3 AA2 3 LEU A 344 GLU A 350 -1 O SER A 345 N ALA A 332 SHEET 1 AA3 4 ARG A 302 ASP A 306 0 SHEET 2 AA3 4 ASP A 309 THR A 320 -1 O THR A 313 N ARG A 302 SHEET 3 AA3 4 GLU A 380 ILE A 390 -1 O LEU A 383 N LYS A 316 SHEET 4 AA3 4 MET A 365 GLU A 369 -1 N THR A 366 O GLY A 384 SHEET 1 AA4 2 LYS A 441 GLN A 442 0 SHEET 2 AA4 2 LYS A 445 SER A 446 -1 O LYS A 445 N GLN A 442 SHEET 1 AA5 2 ILE B 111 PRO B 112 0 SHEET 2 AA5 2 PHE B 118 ALA B 119 -1 O ALA B 119 N ILE B 111 SHEET 1 AA6 3 SER B 283 VAL B 286 0 SHEET 2 AA6 3 VAL B 327 ARG B 333 1 O THR B 329 N THR B 284 SHEET 3 AA6 3 LEU B 344 GLU B 350 -1 O ALA B 349 N MET B 328 SHEET 1 AA7 4 ARG B 302 ASP B 306 0 SHEET 2 AA7 4 ASP B 309 THR B 320 -1 O VAL B 311 N VAL B 304 SHEET 3 AA7 4 GLU B 380 ILE B 390 -1 O LEU B 383 N LYS B 316 SHEET 4 AA7 4 MET B 365 GLU B 369 -1 N GLY B 368 O GLU B 382 SHEET 1 AA8 2 LYS B 441 GLN B 442 0 SHEET 2 AA8 2 LYS B 445 SER B 446 -1 O LYS B 445 N GLN B 442 SITE 1 AC1 8 GLU A 289 PRO A 290 ASN A 291 ARG A 300 SITE 2 AC1 8 ASN A 315 HOH A 732 HOH A 739 HOH A 788 SITE 1 AC2 7 SER A 28 ARG A 32 HOH A 709 THR B 265 SITE 2 AC2 7 GLU B 266 HOH B1068 HOH B1362 SITE 1 AC3 9 GLN A 74 ARG A 81 PHE A 473 TRP A 476 SITE 2 AC3 9 HOH A 706 HOH A 745 HOH A 865 HOH A 924 SITE 3 AC3 9 HOH A 963 SITE 1 AC4 30 GLN A 56 ALA A 285 PHE A 287 THR A 288 SITE 2 AC4 30 GLY A 293 SER A 294 TRP A 318 ILE A 319 SITE 3 AC4 30 THR A 320 GLU A 380 ILE A 533 PHE A 534 SITE 4 AC4 30 ALA A 537 GLU A 539 HOH A 810 HOH A 826 SITE 5 AC4 30 HOH A 846 HOH A 889 HOH A 987 HOH A1016 SITE 6 AC4 30 HOH A1120 ARG B 440 GLN B 442 PHE B 443 SITE 7 AC4 30 LEU B 447 PHE B 450 GLN B 508 ILE B 509 SITE 8 AC4 30 GLY B 511 GLY B 512 SITE 1 AC5 9 GLU B 289 PRO B 290 ASN B 291 ARG B 300 SITE 2 AC5 9 ASN B 315 HOH B 719 HOH B 735 HOH B 794 SITE 3 AC5 9 HOH B 996 SITE 1 AC6 6 THR A 265 GLU A 266 HOH A1048 HOH A1105 SITE 2 AC6 6 HOH A1394 SER B 28 SITE 1 AC7 7 GLN B 74 ARG B 81 PHE B 473 TRP B 476 SITE 2 AC7 7 HOH B 731 HOH B 992 HOH B1127 SITE 1 AC8 30 ARG A 440 GLN A 442 PHE A 443 LEU A 447 SITE 2 AC8 30 PHE A 450 GLN A 508 ILE A 509 GLY A 511 SITE 3 AC8 30 GLY A 512 HOH A 807 GLN B 56 ALA B 285 SITE 4 AC8 30 PHE B 287 THR B 288 GLY B 293 SER B 294 SITE 5 AC8 30 TRP B 318 ILE B 319 THR B 320 ARG B 376 SITE 6 AC8 30 ILE B 533 PHE B 534 ALA B 537 GLU B 539 SITE 7 AC8 30 HOH B 745 HOH B 811 HOH B 869 HOH B 989 SITE 8 AC8 30 HOH B1093 HOH B1095 CRYST1 81.596 105.193 138.939 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012256 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009506 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007197 0.00000