HEADER HYDROLASE 22-OCT-17 6ESL TITLE CRYSTAL STRUCTURE OF THE LEGIONELLA PNEUMOPPILA LAPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIAL LEUCYL AMINOPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.11.10; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 GENE: ERS253249_01626, LPYMG_03046; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINOPEPTIDASE, LEGIONELLA PNEUMOPHILA, VIRULENCE FACTOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.RICHARDSON,J.A.GARNETT REVDAT 3 17-JAN-24 6ESL 1 LINK REVDAT 2 02-MAY-18 6ESL 1 JRNL REVDAT 1 04-APR-18 6ESL 0 JRNL AUTH R.C.WHITE,F.F.GUNDERSON,J.Y.TYSON,K.H.RICHARDSON, JRNL AUTH 2 T.J.PORTLOCK,J.A.GARNETT,N.P.CIANCIOTTO JRNL TITL TYPE II SECRETION-DEPENDENT AMINOPEPTIDASE LAPA AND JRNL TITL 2 ACYLTRANSFERASE PLAC ARE REDUNDANT FOR NUTRIENT ACQUISITION JRNL TITL 3 DURINGLEGIONELLA PNEUMOPHILAINTRACELLULAR INFECTION OF JRNL TITL 4 AMOEBAS. JRNL REF MBIO V. 9 2018 JRNL REFN ESSN 2150-7511 JRNL PMID 29666285 JRNL DOI 10.1128/MBIO.00528-18 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 99.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 62722 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3366 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4479 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.3770 REMARK 3 BIN FREE R VALUE SET COUNT : 255 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5682 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : -0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.961 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5838 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5256 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7924 ; 2.045 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12237 ; 1.152 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 716 ; 6.425 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 269 ;36.971 ;24.981 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 986 ;15.826 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.079 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 889 ; 0.149 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6469 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1150 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2885 ; 1.748 ; 2.192 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2884 ; 1.749 ; 2.191 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3594 ; 2.649 ; 3.266 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3595 ; 2.649 ; 3.267 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2953 ; 2.305 ; 2.496 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2950 ; 2.305 ; 2.493 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4329 ; 3.625 ; 3.625 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6697 ; 5.930 ;26.511 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6640 ; 5.899 ;26.233 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 377 B 4 377 24192 0.05 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 377 REMARK 3 ORIGIN FOR THE GROUP (A): 30.6590 4.1650 118.8870 REMARK 3 T TENSOR REMARK 3 T11: 0.0497 T22: 0.1504 REMARK 3 T33: 0.1493 T12: 0.0323 REMARK 3 T13: -0.0559 T23: -0.0443 REMARK 3 L TENSOR REMARK 3 L11: 1.3033 L22: 1.2526 REMARK 3 L33: 0.8410 L12: 0.7625 REMARK 3 L13: -0.8971 L23: -0.6156 REMARK 3 S TENSOR REMARK 3 S11: 0.0933 S12: -0.1805 S13: 0.0506 REMARK 3 S21: 0.1897 S22: -0.0429 S23: -0.0663 REMARK 3 S31: -0.0743 S32: 0.1685 S33: -0.0504 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 377 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7790 -7.2200 113.9310 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.0922 REMARK 3 T33: 0.1830 T12: -0.0037 REMARK 3 T13: -0.0807 T23: -0.0403 REMARK 3 L TENSOR REMARK 3 L11: 2.6739 L22: 0.9120 REMARK 3 L33: 1.2100 L12: 0.2380 REMARK 3 L13: -1.3540 L23: -0.2240 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: 0.4470 S13: -0.1875 REMARK 3 S21: -0.2023 S22: 0.0337 S23: 0.2165 REMARK 3 S31: 0.0431 S32: -0.1322 S33: -0.0075 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6ESL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200007189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66414 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 99.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.20000 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GNE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 5.5, 25% (W/V) PEG 4000, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.29850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.00600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.77800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.00600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.29850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.77800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -165.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 ALA A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 VAL A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 LYS A -1 REMARK 465 MET A 0 REMARK 465 THR A 1 REMARK 465 THR A 2 REMARK 465 THR A 65 REMARK 465 GLY A 66 REMARK 465 THR A 67 REMARK 465 LEU A 68 REMARK 465 ALA A 69 REMARK 465 ALA A 70 REMARK 465 ASN A 71 REMARK 465 LYS A 82 REMARK 465 LYS A 83 REMARK 465 LEU A 84 REMARK 465 VAL A 85 REMARK 465 LYS A 86 REMARK 465 PRO A 87 REMARK 465 PHE A 88 REMARK 465 HIS A 94 REMARK 465 LYS A 95 REMARK 465 ASP A 96 REMARK 465 MET B -14 REMARK 465 ALA B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 VAL B -6 REMARK 465 ASP B -5 REMARK 465 ASP B -4 REMARK 465 ASP B -3 REMARK 465 ASP B -2 REMARK 465 LYS B -1 REMARK 465 MET B 0 REMARK 465 THR B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 THR B 65 REMARK 465 GLY B 66 REMARK 465 THR B 67 REMARK 465 LEU B 68 REMARK 465 ALA B 69 REMARK 465 ALA B 70 REMARK 465 ASN B 71 REMARK 465 LYS B 82 REMARK 465 LYS B 83 REMARK 465 LEU B 84 REMARK 465 VAL B 85 REMARK 465 LYS B 86 REMARK 465 PRO B 87 REMARK 465 PHE B 88 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 335 CA - CB - SG ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 56 -149.75 -109.13 REMARK 500 LYS A 101 13.54 -140.48 REMARK 500 MET A 270 101.13 79.00 REMARK 500 SER A 319 -169.67 -162.98 REMARK 500 HIS B 56 -149.89 -106.53 REMARK 500 LYS B 101 13.32 -141.89 REMARK 500 LYS B 185 73.10 -101.83 REMARK 500 LEU B 245 21.91 83.29 REMARK 500 MET B 270 103.03 79.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 194 NE2 REMARK 620 2 ASP A 207 OD1 80.9 REMARK 620 3 ASP A 269 OD1 90.9 89.9 REMARK 620 4 ASP A 269 OD2 89.2 145.0 56.5 REMARK 620 5 HOH A 629 O 174.7 104.4 89.6 86.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 207 OD2 REMARK 620 2 GLU A 242 OE2 78.8 REMARK 620 3 HIS A 347 NE2 93.7 77.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 194 NE2 REMARK 620 2 ASP B 207 OD1 93.1 REMARK 620 3 ASP B 269 OD1 106.6 94.5 REMARK 620 4 ASP B 269 OD2 110.3 143.5 52.8 REMARK 620 5 HOH B 511 O 174.7 92.2 73.5 65.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 207 OD2 REMARK 620 2 GLU B 242 OE2 78.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 DBREF1 6ESL A 1 378 UNP A0A130VCV0_LEGPN DBREF2 6ESL A A0A130VCV0 24 401 DBREF1 6ESL B 1 378 UNP A0A130VCV0_LEGPN DBREF2 6ESL B A0A130VCV0 24 401 SEQADV 6ESL MET A -14 UNP A0A130VCV INITIATING METHIONINE SEQADV 6ESL ALA A -13 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL HIS A -12 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL HIS A -11 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL HIS A -10 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL HIS A -9 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL HIS A -8 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL HIS A -7 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL VAL A -6 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL ASP A -5 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL ASP A -4 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL ASP A -3 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL ASP A -2 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL LYS A -1 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL MET A 0 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL LYS A 51 UNP A0A130VCV GLN 74 CONFLICT SEQADV 6ESL MET B -14 UNP A0A130VCV INITIATING METHIONINE SEQADV 6ESL ALA B -13 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL HIS B -12 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL HIS B -11 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL HIS B -10 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL HIS B -9 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL HIS B -8 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL HIS B -7 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL VAL B -6 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL ASP B -5 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL ASP B -4 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL ASP B -3 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL ASP B -2 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL LYS B -1 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL MET B 0 UNP A0A130VCV EXPRESSION TAG SEQADV 6ESL LYS B 51 UNP A0A130VCV GLN 74 CONFLICT SEQRES 1 A 393 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 393 LYS MET THR THR SER PRO VAL HIS GLU GLN LEU GLN VAL SEQRES 3 A 393 PRO GLN CYS LEU ALA ALA LYS ILE THR VAL PRO HIS LYS SEQRES 4 A 393 ILE LEU ALA GLU ASN LYS GLU PHE LYS ILE ILE ASP VAL SEQRES 5 A 393 LEU SER SER ASP VAL GLU THR LEU THR ILE LEU ALA ASP SEQRES 6 A 393 LYS VAL SER CYS GLY HIS PHE VAL ASN VAL SER HIS LYS SEQRES 7 A 393 LEU THR GLY THR LEU ALA ALA ASN GLN GLN GLN SER ALA SEQRES 8 A 393 GLN LYS LEU LEU GLN LYS LYS LEU VAL LYS PRO PHE GLY SEQRES 9 A 393 VAL SER LYS LEU HIS LYS ASP VAL TYR GLU ILE LYS HIS SEQRES 10 A 393 GLU GLU GLU VAL ASN ALA ALA LEU LYS GLU ILE VAL SER SEQRES 11 A 393 ASP ASN ILE TRP GLN THR LEU THR HIS MET THR SER TYR SEQRES 12 A 393 TYR ASN ARG SER ALA THR LYS ASP THR GLY VAL GLU THR SEQRES 13 A 393 ALA ASN TRP LEU LYS SER LYS PHE GLU GLN MET ALA VAL SEQRES 14 A 393 GLU TYR GLY ARG THR ASP THR SER THR PHE PHE VAL LYS SEQRES 15 A 393 THR GLY TRP TYR LYS GLN PRO SER LEU VAL THR VAL ILE SEQRES 16 A 393 GLY LYS ASP ILE LYS ALA PRO ALA ILE VAL ILE GLY ALA SEQRES 17 A 393 HIS MET ASP THR LEU ASP GLY ARG MET PRO GLY ALA GLY SEQRES 18 A 393 ASP ASP GLY SER GLY SER SER SER ILE MET GLU ALA ALA SEQRES 19 A 393 ARG VAL ILE LEU SER SER LYS THR THR PHE LYS ARG PRO SEQRES 20 A 393 ILE TYR PHE ILE TRP TYR ALA ALA GLU GLU ARG GLY LEU SEQRES 21 A 393 VAL GLY SER GLN HIS VAL VAL GLN HIS PHE GLN GLU GLN SEQRES 22 A 393 SER ILE PRO VAL LYS ALA VAL VAL GLN PHE ASP MET THR SEQRES 23 A 393 GLY TYR ARG ASN ASP ALA ASN ASP PRO THR MET TRP VAL SEQRES 24 A 393 PHE THR ASP TYR THR ASP ARG ASP LEU SER ASN TYR LEU SEQRES 25 A 393 ALA LYS LEU ILE ASP HIS TYR ILE HIS VAL PRO VAL ASP SEQRES 26 A 393 TYR SER ARG CYS GLY TYR GLY CYS SER ASP HIS ALA SER SEQRES 27 A 393 TRP ASN GLU GLU ASP ILE PRO ALA ALA PHE PRO CYS GLU SEQRES 28 A 393 THR SER PHE ALA ASP HIS ASN PRO TYR ILE HIS THR SER SEQRES 29 A 393 SER ASP LYS MET ASP LEU LEU ASN LEU GLU HIS MET THR SEQRES 30 A 393 ASN PHE SER LYS LEU ALA VAL ALA PHE ALA ILE GLU LEU SEQRES 31 A 393 ALA SER GLU SEQRES 1 B 393 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 B 393 LYS MET THR THR SER PRO VAL HIS GLU GLN LEU GLN VAL SEQRES 3 B 393 PRO GLN CYS LEU ALA ALA LYS ILE THR VAL PRO HIS LYS SEQRES 4 B 393 ILE LEU ALA GLU ASN LYS GLU PHE LYS ILE ILE ASP VAL SEQRES 5 B 393 LEU SER SER ASP VAL GLU THR LEU THR ILE LEU ALA ASP SEQRES 6 B 393 LYS VAL SER CYS GLY HIS PHE VAL ASN VAL SER HIS LYS SEQRES 7 B 393 LEU THR GLY THR LEU ALA ALA ASN GLN GLN GLN SER ALA SEQRES 8 B 393 GLN LYS LEU LEU GLN LYS LYS LEU VAL LYS PRO PHE GLY SEQRES 9 B 393 VAL SER LYS LEU HIS LYS ASP VAL TYR GLU ILE LYS HIS SEQRES 10 B 393 GLU GLU GLU VAL ASN ALA ALA LEU LYS GLU ILE VAL SER SEQRES 11 B 393 ASP ASN ILE TRP GLN THR LEU THR HIS MET THR SER TYR SEQRES 12 B 393 TYR ASN ARG SER ALA THR LYS ASP THR GLY VAL GLU THR SEQRES 13 B 393 ALA ASN TRP LEU LYS SER LYS PHE GLU GLN MET ALA VAL SEQRES 14 B 393 GLU TYR GLY ARG THR ASP THR SER THR PHE PHE VAL LYS SEQRES 15 B 393 THR GLY TRP TYR LYS GLN PRO SER LEU VAL THR VAL ILE SEQRES 16 B 393 GLY LYS ASP ILE LYS ALA PRO ALA ILE VAL ILE GLY ALA SEQRES 17 B 393 HIS MET ASP THR LEU ASP GLY ARG MET PRO GLY ALA GLY SEQRES 18 B 393 ASP ASP GLY SER GLY SER SER SER ILE MET GLU ALA ALA SEQRES 19 B 393 ARG VAL ILE LEU SER SER LYS THR THR PHE LYS ARG PRO SEQRES 20 B 393 ILE TYR PHE ILE TRP TYR ALA ALA GLU GLU ARG GLY LEU SEQRES 21 B 393 VAL GLY SER GLN HIS VAL VAL GLN HIS PHE GLN GLU GLN SEQRES 22 B 393 SER ILE PRO VAL LYS ALA VAL VAL GLN PHE ASP MET THR SEQRES 23 B 393 GLY TYR ARG ASN ASP ALA ASN ASP PRO THR MET TRP VAL SEQRES 24 B 393 PHE THR ASP TYR THR ASP ARG ASP LEU SER ASN TYR LEU SEQRES 25 B 393 ALA LYS LEU ILE ASP HIS TYR ILE HIS VAL PRO VAL ASP SEQRES 26 B 393 TYR SER ARG CYS GLY TYR GLY CYS SER ASP HIS ALA SER SEQRES 27 B 393 TRP ASN GLU GLU ASP ILE PRO ALA ALA PHE PRO CYS GLU SEQRES 28 B 393 THR SER PHE ALA ASP HIS ASN PRO TYR ILE HIS THR SER SEQRES 29 B 393 SER ASP LYS MET ASP LEU LEU ASN LEU GLU HIS MET THR SEQRES 30 B 393 ASN PHE SER LYS LEU ALA VAL ALA PHE ALA ILE GLU LEU SEQRES 31 B 393 ALA SER GLU HET ZN A 401 1 HET ZN A 402 1 HET ZN B 401 1 HET ZN B 402 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *313(H2 O) HELIX 1 AA1 GLN A 13 ALA A 17 1 5 HELIX 2 AA2 ASP A 41 SER A 53 1 13 HELIX 3 AA3 GLN A 73 LEU A 80 1 8 HELIX 4 AA4 HIS A 102 LYS A 111 1 10 HELIX 5 AA5 VAL A 114 TYR A 128 1 15 HELIX 6 AA6 LYS A 135 TYR A 156 1 22 HELIX 7 AA7 ASP A 208 SER A 225 1 18 HELIX 8 AA8 ALA A 240 GLY A 244 5 5 HELIX 9 AA9 LEU A 245 GLN A 258 1 14 HELIX 10 AB1 ASP A 290 ILE A 305 1 16 HELIX 11 AB2 ASP A 320 GLU A 326 1 7 HELIX 12 AB3 LYS A 352 LEU A 356 5 5 HELIX 13 AB4 ASN A 357 SER A 377 1 21 HELIX 14 AB5 GLN B 13 ALA B 17 1 5 HELIX 15 AB6 ASP B 41 SER B 53 1 13 HELIX 16 AB7 GLN B 73 LEU B 80 1 8 HELIX 17 AB8 HIS B 102 LYS B 111 1 10 HELIX 18 AB9 VAL B 114 TYR B 128 1 15 HELIX 19 AC1 LYS B 135 TYR B 156 1 22 HELIX 20 AC2 ASP B 208 SER B 225 1 18 HELIX 21 AC3 ALA B 240 GLY B 244 5 5 HELIX 22 AC4 LEU B 245 GLN B 258 1 14 HELIX 23 AC5 ASP B 290 ILE B 305 1 16 HELIX 24 AC6 ASP B 320 GLU B 326 1 7 HELIX 25 AC7 LYS B 352 LEU B 356 5 5 HELIX 26 AC8 ASN B 357 SER B 377 1 21 SHEET 1 AA1 4 LYS A 24 GLU A 28 0 SHEET 2 AA1 4 PHE A 32 LEU A 38 -1 O ILE A 34 N LEU A 26 SHEET 3 AA1 4 HIS A 6 PRO A 12 -1 N VAL A 11 O LYS A 33 SHEET 4 AA1 4 VAL A 58 ASN A 59 -1 O VAL A 58 N GLN A 10 SHEET 1 AA2 6 THR A 161 THR A 168 0 SHEET 2 AA2 6 TYR A 171 ILE A 180 -1 O VAL A 177 N PHE A 164 SHEET 3 AA2 6 ILE A 233 TYR A 238 -1 O TRP A 237 N LEU A 176 SHEET 4 AA2 6 ALA A 188 HIS A 194 1 N ILE A 189 O TYR A 234 SHEET 5 AA2 6 VAL A 262 GLN A 267 1 O ALA A 264 N VAL A 190 SHEET 6 AA2 6 ALA A 331 ALA A 332 1 O ALA A 332 N GLN A 267 SHEET 1 AA3 3 VAL A 309 SER A 312 0 SHEET 2 AA3 3 MET A 282 PHE A 285 1 N VAL A 284 O ASP A 310 SHEET 3 AA3 3 PRO A 334 CYS A 335 -1 O CYS A 335 N TRP A 283 SHEET 1 AA4 4 LYS B 24 GLU B 28 0 SHEET 2 AA4 4 PHE B 32 LEU B 38 -1 O ILE B 34 N LEU B 26 SHEET 3 AA4 4 HIS B 6 PRO B 12 -1 N VAL B 11 O LYS B 33 SHEET 4 AA4 4 VAL B 58 ASN B 59 -1 O VAL B 58 N GLN B 10 SHEET 1 AA5 6 THR B 161 THR B 168 0 SHEET 2 AA5 6 TYR B 171 ILE B 180 -1 O VAL B 177 N PHE B 164 SHEET 3 AA5 6 ILE B 233 TYR B 238 -1 O TRP B 237 N LEU B 176 SHEET 4 AA5 6 ALA B 188 HIS B 194 1 N ILE B 189 O TYR B 234 SHEET 5 AA5 6 VAL B 262 GLN B 267 1 O ALA B 264 N VAL B 190 SHEET 6 AA5 6 ALA B 331 ALA B 332 1 O ALA B 332 N GLN B 267 SHEET 1 AA6 3 VAL B 309 SER B 312 0 SHEET 2 AA6 3 MET B 282 PHE B 285 1 N VAL B 284 O ASP B 310 SHEET 3 AA6 3 PRO B 334 CYS B 335 -1 O CYS B 335 N TRP B 283 SSBOND 1 CYS A 14 CYS A 54 1555 1555 2.06 SSBOND 2 CYS A 314 CYS A 318 1555 1555 2.04 SSBOND 3 CYS B 14 CYS B 54 1555 1555 2.10 SSBOND 4 CYS B 314 CYS B 318 1555 1555 2.00 LINK NE2 HIS A 194 ZN ZN A 402 1555 1555 2.13 LINK OD2 ASP A 207 ZN ZN A 401 1555 1555 1.88 LINK OD1 ASP A 207 ZN ZN A 402 1555 1555 1.90 LINK OE2 GLU A 242 ZN ZN A 401 1555 1555 2.34 LINK OD1 ASP A 269 ZN ZN A 402 1555 1555 2.26 LINK OD2 ASP A 269 ZN ZN A 402 1555 1555 2.20 LINK NE2 HIS A 347 ZN ZN A 401 1555 1555 2.67 LINK ZN ZN A 402 O HOH A 629 1555 1555 2.22 LINK NE2 HIS B 194 ZN ZN B 402 1555 1555 2.16 LINK OD2 ASP B 207 ZN ZN B 401 1555 1555 2.49 LINK OD1 ASP B 207 ZN ZN B 402 1555 1555 1.96 LINK OE2 GLU B 242 ZN ZN B 401 1555 1555 2.56 LINK OD1 ASP B 269 ZN ZN B 402 1555 1555 2.38 LINK OD2 ASP B 269 ZN ZN B 402 1555 1555 2.55 LINK ZN ZN B 402 O HOH B 511 1555 1555 2.19 CISPEP 1 ASP A 207 ASP A 208 0 -6.91 CISPEP 2 ASP B 207 ASP B 208 0 -11.63 SITE 1 AC1 4 ASP A 207 GLU A 242 HIS A 347 ZN A 402 SITE 1 AC2 5 HIS A 194 ASP A 207 ASP A 269 ZN A 401 SITE 2 AC2 5 HOH A 629 SITE 1 AC3 6 ASP B 207 GLU B 241 GLU B 242 HIS B 347 SITE 2 AC3 6 ZN B 402 HOH B 511 SITE 1 AC4 5 HIS B 194 ASP B 207 ASP B 269 ZN B 401 SITE 2 AC4 5 HOH B 511 CRYST1 76.597 99.556 104.012 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013055 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010045 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009614 0.00000