HEADER PLANT PROTEIN 26-OCT-17 6ETF
TITLE THE STRUCTURE OF THE MO-INSERTASE DOMAIN CNX1E FROM ARABIDOPSIS
TITLE 2 THALIANA IN COMPLEX WITH AMP AND MOLYBDATE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MOLYBDOPTERIN BIOSYNTHESIS PROTEIN CNX1;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: MOLYBDENUM COFACTOR BIOSYNTHESIS ENZYME CNX1;
COMPND 5 EC: 2.10.1.1,2.7.7.75;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA;
SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS;
SOURCE 4 ORGANISM_TAXID: 3702;
SOURCE 5 GENE: CNX1, AT5G20990, F22D1.6, T10F18.20;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: RK5204;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGPLUS-CNX1E
KEYWDS ARABIDOPSIS, ARABIDOPSIS PROTEINS, COENZYMES, METALLOPROTEINS,
KEYWDS 2 CATALYTIC DOMAIN, NUCLEOTIDE BINDING, ENTROPIC ENZYME, ADENOSINE
KEYWDS 3 MONOPHOSPHATE, MOLYBDATE, ALTERNATE BINDING, INSERTION MECHANISM,
KEYWDS 4 PLANT PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR J.KRAUSZE
REVDAT 2 17-JAN-24 6ETF 1 LINK
REVDAT 1 18-JUL-18 6ETF 0
JRNL AUTH J.KRAUSZE,T.W.HERCHER,D.ZWERSCHKE,M.L.KIRK,W.BLANKENFELDT,
JRNL AUTH 2 R.R.MENDEL,T.KRUSE
JRNL TITL THE FUNCTIONAL PRINCIPLE OF EUKARYOTIC MOLYBDENUM
JRNL TITL 2 INSERTASES.
JRNL REF BIOCHEM. J. V. 475 1739 2018
JRNL REFN ESSN 1470-8728
JRNL PMID 29717023
JRNL DOI 10.1042/BCJ20170935
REMARK 2
REMARK 2 RESOLUTION. 1.78 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.3
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.14
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 65.5
REMARK 3 NUMBER OF REFLECTIONS : 34550
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.175
REMARK 3 R VALUE (WORKING SET) : 0.173
REMARK 3 FREE R VALUE : 0.216
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840
REMARK 3 FREE R VALUE TEST SET COUNT : 1673
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 17
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.84
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 3.02
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 136
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.4038
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 128
REMARK 3 BIN R VALUE (WORKING SET) : 0.4007
REMARK 3 BIN FREE R VALUE : 0.4499
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.88
REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3107
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 45
REMARK 3 SOLVENT ATOMS : 427
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 36.87
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.46
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.11670
REMARK 3 B22 (A**2) : 0.58920
REMARK 3 B33 (A**2) : -0.47250
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.240
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.166
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.150
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.258
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.144
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 6550 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 11937 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1437 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES : 993 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 6550 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 450 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 7138 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.23
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.65
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.53
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|16 - 192 }
REMARK 3 ORIGIN FOR THE GROUP (A): 30.7543 17.6926 27.0374
REMARK 3 T TENSOR
REMARK 3 T11: -0.0587 T22: -0.0606
REMARK 3 T33: -0.0908 T12: -0.0378
REMARK 3 T13: 0.0384 T23: -0.0387
REMARK 3 L TENSOR
REMARK 3 L11: 0.7778 L22: 0.5539
REMARK 3 L33: 2.0136 L12: -0.0515
REMARK 3 L13: 0.7262 L23: -0.0869
REMARK 3 S TENSOR
REMARK 3 S11: 0.0814 S12: -0.2396 S13: 0.1378
REMARK 3 S21: 0.2179 S22: -0.0959 S23: 0.0041
REMARK 3 S31: -0.2052 S32: -0.2690 S33: 0.0145
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { A|193 - 442 }
REMARK 3 ORIGIN FOR THE GROUP (A): 26.1303 20.7559 -16.9207
REMARK 3 T TENSOR
REMARK 3 T11: -0.0584 T22: -0.0748
REMARK 3 T33: -0.0647 T12: 0.0714
REMARK 3 T13: 0.0001 T23: 0.0352
REMARK 3 L TENSOR
REMARK 3 L11: 0.6193 L22: 0.9764
REMARK 3 L33: 1.7371 L12: 0.0706
REMARK 3 L13: -0.1524 L23: 0.3481
REMARK 3 S TENSOR
REMARK 3 S11: 0.0916 S12: 0.0794 S13: 0.0784
REMARK 3 S21: -0.1740 S22: -0.0751 S23: 0.1195
REMARK 3 S31: -0.3167 S32: -0.0891 S33: -0.0165
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6ETF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-OCT-17.
REMARK 100 THE DEPOSITION ID IS D_1200007226.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 03-JUN-17
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : BESSY
REMARK 200 BEAMLINE : 14.1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.77
REMARK 200 MONOCHROMATOR : SI111 DOUBLE CRYSTAL WITH
REMARK 200 SAGITAL BENDER
REMARK 200 OPTICS : MIRRORS
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOV 1, 2016
REMARK 200 DATA SCALING SOFTWARE : STARANISO 1.0.5
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34559
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.781
REMARK 200 RESOLUTION RANGE LOW (A) : 45.072
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 65.6
REMARK 200 DATA REDUNDANCY : 15.38
REMARK 200 R MERGE (I) : 0.05400
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.5580
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96
REMARK 200 COMPLETENESS FOR SHELL (%) : 13.2
REMARK 200 DATA REDUNDANCY IN SHELL : 9.72
REMARK 200 R MERGE FOR SHELL (I) : 1.33900
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.527
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER 2.6.0
REMARK 200 STARTING MODEL: 5G2R
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 54.82
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % (V/V) 1,2-ETHANEDIOL; 10 % (W/V)
REMARK 280 PEG 8000; 0.3 M MGCL2; 0.3 M CACL2; 0.1 M TRIS/BICINE, PH 7.4,
REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X,Y,-Z
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z+1/2
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.55500
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.78500
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.89500
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.55500
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.78500
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.89500
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.55500
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.78500
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.89500
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.55500
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.78500
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.89500
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 12200 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 31730 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.11000
REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 982 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -4
REMARK 465 SER A -3
REMARK 465 ARG A -2
REMARK 465 GLY A -1
REMARK 465 SER A 0
REMARK 465 MET A 1
REMARK 465 GLU A 2
REMARK 465 GLY A 3
REMARK 465 GLN A 4
REMARK 465 GLY A 5
REMARK 465 CYS A 6
REMARK 465 CYS A 7
REMARK 465 GLY A 8
REMARK 465 GLY A 9
REMARK 465 GLY A 10
REMARK 465 GLY A 11
REMARK 465 GLY A 12
REMARK 465 LYS A 13
REMARK 465 THR A 14
REMARK 465 GLU A 15
REMARK 465 THR A 309
REMARK 465 GLU A 310
REMARK 465 SER A 311
REMARK 465 MET A 312
REMARK 465 LEU A 313
REMARK 465 LYS A 443
REMARK 465 LYS A 444
REMARK 465 ALA A 445
REMARK 465 SER A 446
REMARK 465 LEU A 447
REMARK 465 SER A 448
REMARK 465 GLU A 449
REMARK 465 PRO A 450
REMARK 465 GLY A 451
REMARK 465 SER A 452
REMARK 465 THR A 453
REMARK 465 SER A 454
REMARK 465 GLY A 455
REMARK 465 GLY A 456
REMARK 465 SER A 457
REMARK 465 ALA A 458
REMARK 465 TRP A 459
REMARK 465 SER A 460
REMARK 465 HIS A 461
REMARK 465 PRO A 462
REMARK 465 GLN A 463
REMARK 465 PHE A 464
REMARK 465 GLU A 465
REMARK 465 LYS A 466
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 133 CG CD OE1 OE2
REMARK 470 LYS A 135 CD CE NZ
REMARK 470 LYS A 144 CG CD CE NZ
REMARK 470 LYS A 145 CD CE NZ
REMARK 470 LYS A 245 CD CE NZ
REMARK 470 LYS A 290 CD CE NZ
REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 307 CG CD CE NZ
REMARK 470 ASP A 435 CG OD1 OD2
REMARK 470 ILE A 436 CG1 CG2 CD1
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HH TYR A 41 O HOH A 601 1.59
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 CB ILE A 436 CB ILE A 436 3655 1.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 SER A 269 -140.98 -95.68
REMARK 500 LYS A 297 -54.99 175.32
REMARK 500 ASP A 435 105.70 -29.35
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A1024 DISTANCE = 5.91 ANGSTROMS
REMARK 525 HOH A1025 DISTANCE = 6.07 ANGSTROMS
REMARK 525 HOH A1026 DISTANCE = 6.31 ANGSTROMS
REMARK 525 HOH A1027 DISTANCE = 7.31 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 502 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 AMP A 501 O2P
REMARK 620 2 HOH A 613 O 93.0
REMARK 620 3 HOH A 654 O 91.7 175.2
REMARK 620 4 HOH A 666 O 173.7 91.4 83.8
REMARK 620 5 HOH A 778 O 90.5 90.2 90.7 94.1
REMARK 620 6 HOH A 838 O 97.2 84.6 93.8 78.7 171.0
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MOO A 503
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: SASDCM8 RELATED DB: SASBDB
DBREF 6ETF A 1 452 UNP Q39054 CNX1_ARATH 1 452
SEQADV 6ETF MET A -4 UNP Q39054 INITIATING METHIONINE
SEQADV 6ETF SER A -3 UNP Q39054 EXPRESSION TAG
SEQADV 6ETF ARG A -2 UNP Q39054 EXPRESSION TAG
SEQADV 6ETF GLY A -1 UNP Q39054 EXPRESSION TAG
SEQADV 6ETF SER A 0 UNP Q39054 EXPRESSION TAG
SEQADV 6ETF THR A 453 UNP Q39054 EXPRESSION TAG
SEQADV 6ETF SER A 454 UNP Q39054 EXPRESSION TAG
SEQADV 6ETF GLY A 455 UNP Q39054 EXPRESSION TAG
SEQADV 6ETF GLY A 456 UNP Q39054 EXPRESSION TAG
SEQADV 6ETF SER A 457 UNP Q39054 EXPRESSION TAG
SEQADV 6ETF ALA A 458 UNP Q39054 EXPRESSION TAG
SEQADV 6ETF TRP A 459 UNP Q39054 EXPRESSION TAG
SEQADV 6ETF SER A 460 UNP Q39054 EXPRESSION TAG
SEQADV 6ETF HIS A 461 UNP Q39054 EXPRESSION TAG
SEQADV 6ETF PRO A 462 UNP Q39054 EXPRESSION TAG
SEQADV 6ETF GLN A 463 UNP Q39054 EXPRESSION TAG
SEQADV 6ETF PHE A 464 UNP Q39054 EXPRESSION TAG
SEQADV 6ETF GLU A 465 UNP Q39054 EXPRESSION TAG
SEQADV 6ETF LYS A 466 UNP Q39054 EXPRESSION TAG
SEQRES 1 A 471 MET SER ARG GLY SER MET GLU GLY GLN GLY CYS CYS GLY
SEQRES 2 A 471 GLY GLY GLY GLY LYS THR GLU MET ILE PRO THR GLU GLU
SEQRES 3 A 471 ALA LEU ARG ILE VAL PHE GLY VAL SER LYS ARG LEU PRO
SEQRES 4 A 471 PRO VAL ILE VAL SER LEU TYR GLU ALA LEU GLY LYS VAL
SEQRES 5 A 471 LEU ALA GLU ASP ILE ARG ALA PRO ASP PRO LEU PRO PRO
SEQRES 6 A 471 TYR PRO ALA SER VAL LYS ASP GLY TYR ALA VAL VAL ALA
SEQRES 7 A 471 SER ASP GLY PRO GLY GLU TYR PRO VAL ILE THR GLU SER
SEQRES 8 A 471 ARG ALA GLY ASN ASP GLY LEU GLY VAL THR VAL THR PRO
SEQRES 9 A 471 GLY THR VAL ALA TYR VAL THR THR GLY GLY PRO ILE PRO
SEQRES 10 A 471 ASP GLY ALA ASP ALA VAL VAL GLN VAL GLU ASP THR LYS
SEQRES 11 A 471 VAL ILE GLY ASP VAL SER THR GLU SER LYS ARG VAL LYS
SEQRES 12 A 471 ILE LEU ILE GLN THR LYS LYS GLY THR ASP ILE ARG ARG
SEQRES 13 A 471 VAL GLY CYS ASP ILE GLU LYS ASP ALA THR VAL LEU THR
SEQRES 14 A 471 THR GLY GLU ARG ILE GLY ALA SER GLU ILE GLY LEU LEU
SEQRES 15 A 471 ALA THR ALA GLY VAL THR MET VAL LYS VAL TYR PRO MET
SEQRES 16 A 471 PRO ILE VAL ALA ILE LEU SER THR GLY ASP GLU LEU VAL
SEQRES 17 A 471 GLU PRO THR ALA GLY THR LEU GLY ARG GLY GLN ILE ARG
SEQRES 18 A 471 ASP SER ASN ARG ALA MET LEU VAL ALA ALA VAL MET GLN
SEQRES 19 A 471 GLN GLN CYS LYS VAL VAL ASP LEU GLY ILE VAL ARG ASP
SEQRES 20 A 471 ASP ARG LYS GLU LEU GLU LYS VAL LEU ASP GLU ALA VAL
SEQRES 21 A 471 SER SER GLY VAL ASP ILE ILE LEU THR SER GLY GLY VAL
SEQRES 22 A 471 SER MET GLY ASP ARG ASP PHE VAL LYS PRO LEU LEU GLU
SEQRES 23 A 471 GLU LYS GLY LYS VAL TYR PHE SER LYS VAL LEU MET LYS
SEQRES 24 A 471 PRO GLY LYS PRO LEU THR PHE ALA GLU ILE ARG ALA LYS
SEQRES 25 A 471 PRO THR GLU SER MET LEU GLY LYS THR VAL LEU ALA PHE
SEQRES 26 A 471 GLY LEU PRO GLY ASN PRO VAL SER CYS LEU VAL CYS PHE
SEQRES 27 A 471 ASN ILE PHE VAL VAL PRO THR ILE ARG GLN LEU ALA GLY
SEQRES 28 A 471 TRP THR SER PRO HIS PRO LEU ARG VAL ARG LEU ARG LEU
SEQRES 29 A 471 GLN GLU PRO ILE LYS SER ASP PRO ILE ARG PRO GLU PHE
SEQRES 30 A 471 HIS ARG ALA ILE ILE LYS TRP LYS ASP ASN ASP GLY SER
SEQRES 31 A 471 GLY THR PRO GLY PHE VAL ALA GLU SER THR GLY HIS GLN
SEQRES 32 A 471 MET SER SER ARG LEU LEU SER MET ARG SER ALA ASN ALA
SEQRES 33 A 471 LEU LEU GLU LEU PRO ALA THR GLY ASN VAL LEU SER ALA
SEQRES 34 A 471 GLY SER SER VAL SER ALA ILE ILE VAL SER ASP ILE SER
SEQRES 35 A 471 ALA PHE SER ILE ASP LYS LYS ALA SER LEU SER GLU PRO
SEQRES 36 A 471 GLY SER THR SER GLY GLY SER ALA TRP SER HIS PRO GLN
SEQRES 37 A 471 PHE GLU LYS
HET AMP A 501 35
HET MG A 502 1
HET MOO A 503 10
HET EDO A 504 10
HET EDO A 505 10
HET EDO A 506 10
HET EDO A 507 10
HETNAM AMP ADENOSINE MONOPHOSPHATE
HETNAM MG MAGNESIUM ION
HETNAM MOO MOLYBDATE ION
HETNAM EDO 1,2-ETHANEDIOL
HETSYN MOO MOLYBDATE
HETSYN EDO ETHYLENE GLYCOL
FORMUL 2 AMP C10 H14 N5 O7 P
FORMUL 3 MG MG 2+
FORMUL 4 MOO MO O4 2-
FORMUL 5 EDO 4(C2 H6 O2)
FORMUL 9 HOH *427(H2 O)
HELIX 1 AA1 THR A 19 SER A 30 1 12
HELIX 2 AA2 VAL A 72 GLY A 76 5 5
HELIX 3 AA3 GLY A 170 ALA A 180 1 11
HELIX 4 AA4 SER A 218 GLN A 230 1 13
HELIX 5 AA5 ASP A 243 SER A 257 1 15
HELIX 6 AA6 PHE A 275 GLY A 284 1 10
HELIX 7 AA7 ASN A 325 ALA A 345 1 21
HELIX 8 AA8 ARG A 402 ARG A 407 5 6
HELIX 9 AA9 ASP A 435 PHE A 439 5 5
SHEET 1 AA1 2 ILE A 17 PRO A 18 0
SHEET 2 AA1 2 VAL A 291 LEU A 292 1 O LEU A 292 N ILE A 17
SHEET 1 AA2 3 VAL A 36 SER A 39 0
SHEET 2 AA2 3 MET A 184 TYR A 188 -1 O VAL A 185 N VAL A 38
SHEET 3 AA2 3 VAL A 47 LEU A 48 -1 N VAL A 47 O TYR A 188
SHEET 1 AA3 2 ILE A 52 ARG A 53 0
SHEET 2 AA3 2 THR A 161 LEU A 163 -1 O LEU A 163 N ILE A 52
SHEET 1 AA4 2 ALA A 63 SER A 64 0
SHEET 2 AA4 2 ILE A 149 ARG A 150 -1 O ARG A 150 N ALA A 63
SHEET 1 AA5 6 ALA A 117 GLN A 120 0
SHEET 2 AA5 6 GLY A 68 VAL A 71 -1 N VAL A 71 O ALA A 117
SHEET 3 AA5 6 VAL A 102 VAL A 105 -1 O VAL A 105 N GLY A 68
SHEET 4 AA5 6 GLY A 78 SER A 86 1 N SER A 86 O TYR A 104
SHEET 5 AA5 6 ARG A 136 ILE A 139 -1 O VAL A 137 N TYR A 80
SHEET 6 AA5 6 THR A 124 ILE A 127 -1 N LYS A 125 O LYS A 138
SHEET 1 AA6 6 LYS A 233 VAL A 240 0
SHEET 2 AA6 6 ILE A 192 THR A 198 1 N ILE A 195 O LEU A 237
SHEET 3 AA6 6 ILE A 261 SER A 265 1 O LEU A 263 N ALA A 194
SHEET 4 AA6 6 LYS A 315 LEU A 322 1 O LEU A 318 N ILE A 262
SHEET 5 AA6 6 THR A 300 ALA A 306 -1 N ALA A 302 O ALA A 319
SHEET 6 AA6 6 LYS A 285 PHE A 288 -1 N LYS A 285 O GLU A 303
SHEET 1 AA7 2 LEU A 202 VAL A 203 0
SHEET 2 AA7 2 ILE A 215 ARG A 216 1 O ILE A 215 N VAL A 203
SHEET 1 AA8 6 ARG A 354 LEU A 359 0
SHEET 2 AA8 6 GLY A 389 SER A 394 1 O ALA A 392 N ARG A 358
SHEET 3 AA8 6 GLU A 371 LYS A 380 -1 N LYS A 380 O GLY A 389
SHEET 4 AA8 6 ALA A 411 LEU A 415 -1 O LEU A 413 N HIS A 373
SHEET 5 AA8 6 SER A 427 ILE A 432 -1 O SER A 429 N GLU A 414
SHEET 6 AA8 6 ARG A 354 LEU A 359 -1 N LEU A 357 O VAL A 428
SHEET 1 AA9 2 ILE A 363 LYS A 364 0
SHEET 2 AA9 2 VAL A 421 LEU A 422 -1 O LEU A 422 N ILE A 363
LINK O2P AMP A 501 MG MG A 502 1555 1555 2.02
LINK MG MG A 502 O HOH A 613 1555 1555 2.05
LINK MG MG A 502 O HOH A 654 1555 1555 2.16
LINK MG MG A 502 O HOH A 666 1555 1555 2.18
LINK MG MG A 502 O HOH A 778 1555 1555 2.13
LINK MG MG A 502 O HOH A 838 1555 3655 2.13
CISPEP 1 LEU A 58 PRO A 59 0 -9.98
CISPEP 2 LYS A 294 PRO A 295 0 -2.80
CISPEP 3 LYS A 294 PRO A 295 0 5.05
SITE 1 AC1 25 THR A 107 GLY A 108 SER A 197 GLU A 201
SITE 2 AC1 25 LEU A 202 ILE A 215 ASP A 217 SER A 218
SITE 3 AC1 25 ASN A 219 GLY A 266 GLY A 267 SER A 269
SITE 4 AC1 25 GLY A 324 ASN A 325 MG A 502 HOH A 604
SITE 5 AC1 25 HOH A 612 HOH A 613 HOH A 623 HOH A 654
SITE 6 AC1 25 HOH A 684 HOH A 735 HOH A 763 HOH A 778
SITE 7 AC1 25 HOH A 807
SITE 1 AC2 6 AMP A 501 HOH A 613 HOH A 654 HOH A 666
SITE 2 AC2 6 HOH A 778 HOH A 838
SITE 1 AC3 14 LYS A 294 PRO A 295 GLY A 296 LYS A 297
SITE 2 AC3 14 PRO A 298 ASN A 325 SER A 328 ARG A 369
SITE 3 AC3 14 SER A 400 HOH A 607 HOH A 669 HOH A 729
SITE 4 AC3 14 HOH A 800 HOH A 835
SITE 1 AC4 4 GLY A 166 TRP A 347 THR A 348 SER A 349
SITE 1 AC5 6 GLY A 170 SER A 172 GLU A 173 ALA A 409
SITE 2 AC5 6 SER A 434 HOH A 686
SITE 1 AC6 3 ARG A 53 VAL A 182 HOH A 658
SITE 1 AC7 4 GLU A 85 TYR A 104 ASP A 272 HOH A 637
CRYST1 67.110 123.570 131.790 90.00 90.00 90.00 I 2 2 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014901 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008093 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007588 0.00000