HEADER RNA BINDING PROTEIN 31-OCT-17 6EUW
TITLE CRYSTAL STRUCTURE OF THE CAP-BINDING DOMAIN OF THE PB2 SUBUNIT OF
TITLE 2 INFLUENZA A/H5N1 POLYMERASE BOUND TO AN AZAINDAZOLE INHIBITOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: POLYMERASE BASIC PROTEIN 2;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES;
COMPND 5 OTHER_DETAILS: 424-LOOP DELETION VARIANT REPLACE 421-VNRANQR BY GSG
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS
SOURCE 3 (A/DUCK/SHANTOU/4610/2003(H5N1));
SOURCE 4 ORGANISM_TAXID: 365107;
SOURCE 5 GENE: PB2;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS INFLUENZA RNA-DEPENDENT RNA POLYMERASE, PB2 SUBUNIT, CAP-BINDING
KEYWDS 2 DOMAIN, INHIBITOR, RNA BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR S.CUSACK,S.GAUDON
REVDAT 3 17-JAN-24 6EUW 1 REMARK
REVDAT 2 07-FEB-18 6EUW 1 JRNL
REVDAT 1 13-DEC-17 6EUW 0
JRNL AUTH A.PFLUG,S.GAUDON,P.RESA-INFANTE,M.LETHIER,S.REICH,
JRNL AUTH 2 W.M.SCHULZE,S.CUSACK
JRNL TITL CAPPED RNA PRIMER BINDING TO INFLUENZA POLYMERASE AND
JRNL TITL 2 IMPLICATIONS FOR THE MECHANISM OF CAP-BINDING INHIBITORS.
JRNL REF NUCLEIC ACIDS RES. V. 46 956 2018
JRNL REFN ESSN 1362-4962
JRNL PMID 29202182
JRNL DOI 10.1093/NAR/GKX1210
REMARK 2
REMARK 2 RESOLUTION. 1.00 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0158
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.12
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0
REMARK 3 NUMBER OF REFLECTIONS : 74557
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.141
REMARK 3 R VALUE (WORKING SET) : 0.139
REMARK 3 FREE R VALUE : 0.164
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 3907
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.00
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.03
REMARK 3 REFLECTION IN BIN (WORKING SET) : 3475
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.66
REMARK 3 BIN R VALUE (WORKING SET) : 0.3880
REMARK 3 BIN FREE R VALUE SET COUNT : 204
REMARK 3 BIN FREE R VALUE : 0.3830
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1226
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 41
REMARK 3 SOLVENT ATOMS : 151
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.69
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.27000
REMARK 3 B22 (A**2) : 0.27000
REMARK 3 B33 (A**2) : -0.88000
REMARK 3 B12 (A**2) : 0.14000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.023
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.018
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.850
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1416 ; 0.010 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 1351 ; 0.002 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1918 ; 1.587 ; 1.997
REMARK 3 BOND ANGLES OTHERS (DEGREES): 3137 ; 1.101 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 181 ; 5.839 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 58 ;27.719 ;23.276
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 272 ;12.954 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;13.613 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 218 ; 0.098 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1586 ; 0.008 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 285 ; 0.003 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 694 ; 1.575 ; 1.614
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 693 ; 1.553 ; 1.611
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 885 ; 2.111 ; 2.429
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 886 ; 2.110 ; 2.434
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 722 ; 2.297 ; 2.033
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 722 ; 2.297 ; 2.032
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1034 ; 2.728 ; 2.904
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1519 ; 3.281 ;20.208
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1520 ; 3.283 ;20.227
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2767 ; 1.675 ; 3.000
REMARK 3 SPHERICITY; FREE ATOMS (A**2): 100 ;31.360 ; 5.000
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2788 ; 9.502 ; 5.000
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 6EUW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-OCT-17.
REMARK 100 THE DEPOSITION ID IS D_1200006854.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 09-MAR-13
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ESRF
REMARK 200 BEAMLINE : ID23-1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0615
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74557
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000
REMARK 200 RESOLUTION RANGE LOW (A) : 54.120
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0
REMARK 200 DATA REDUNDANCY : 4.460
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.06500
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.6100
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.06
REMARK 200 COMPLETENESS FOR SHELL (%) : 70.8
REMARK 200 DATA REDUNDANCY IN SHELL : 2.04
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : 0.50800
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.460
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4CB7
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 43.09
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M DI NAH PHOSPHATE AND 20%
REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+5/6
REMARK 290 6555 X-Y,X,Z+1/6
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.32333
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.64667
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.98500
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.30833
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 11.66167
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 510 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 8180 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 317
REMARK 465 ARG A 318
REMARK 465 PHE A 420
REMARK 465 GLY A 421
REMARK 465 SER A 422
REMARK 465 GLY A 423
REMARK 465 MET A 479
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 355 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES
REMARK 500 ARG A 375 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 437 113.73 -170.32
REMARK 500 ASP A 437 113.73 -161.43
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 751 DISTANCE = 7.15 ANGSTROMS
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue BYB A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503
DBREF 6EUW A 318 479 UNP Q2LG68 Q2LG68_9INFA 318 483
SEQADV 6EUW GLY A 317 UNP Q2LG68 EXPRESSION TAG
SEQADV 6EUW GLY A 421 UNP Q2LG68 VAL 421 ENGINEERED MUTATION
SEQADV 6EUW A UNP Q2LG68 ASN 422 DELETION
SEQADV 6EUW A UNP Q2LG68 ARG 423 DELETION
SEQADV 6EUW A UNP Q2LG68 ALA 424 DELETION
SEQADV 6EUW A UNP Q2LG68 ASN 425 DELETION
SEQADV 6EUW SER A 422 UNP Q2LG68 GLN 426 ENGINEERED MUTATION
SEQADV 6EUW GLY A 423 UNP Q2LG68 ARG 427 ENGINEERED MUTATION
SEQRES 1 A 163 GLY ARG ILE SER SER SER PHE SER PHE GLY GLY PHE THR
SEQRES 2 A 163 PHE LYS ARG THR SER GLY SER SER VAL LYS LYS GLU GLU
SEQRES 3 A 163 GLU VAL LEU THR GLY ASN LEU GLN THR LEU LYS ILE ARG
SEQRES 4 A 163 VAL HIS GLU GLY TYR GLU GLU PHE THR MET VAL GLY ARG
SEQRES 5 A 163 ARG ALA THR ALA ILE LEU ARG LYS ALA THR ARG ARG LEU
SEQRES 6 A 163 ILE GLN LEU ILE VAL SER GLY ARG ASP GLU GLN SER ILE
SEQRES 7 A 163 ALA GLU ALA ILE ILE VAL ALA MET VAL PHE SER GLN GLU
SEQRES 8 A 163 ASP CYS MET ILE LYS ALA VAL ARG GLY ASP LEU ASN PHE
SEQRES 9 A 163 GLY SER GLY LEU ASN PRO MET HIS GLN LEU LEU ARG HIS
SEQRES 10 A 163 PHE GLN LYS ASP ALA LYS VAL LEU PHE GLN ASN TRP GLY
SEQRES 11 A 163 ILE GLU PRO ILE ASP ASN VAL MET GLY MET ILE GLY ILE
SEQRES 12 A 163 LEU PRO ASP MET THR PRO SER THR GLU MET SER LEU ARG
SEQRES 13 A 163 GLY VAL ARG VAL SER LYS MET
HET BYB A 501 29
HET GOL A 502 6
HET GOL A 503 6
HETNAM BYB (2~{S},3~{S})-3-[[5-FLUORANYL-2-(5-FLUORANYL-1~{H}-
HETNAM 2 BYB PYRAZOLO[3,4-B]PYRIDIN-3-YL)PYRIMIDIN-4-
HETNAM 3 BYB YL]AMINO]BICYCLO[2.2.2]OCTANE-2-CARBOXYLIC ACID
HETNAM GOL GLYCEROL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 BYB C19 H18 F2 N6 O2
FORMUL 3 GOL 2(C3 H8 O3)
FORMUL 5 HOH *151(H2 O)
HELIX 1 AA1 ASP A 390 SER A 405 1 16
HELIX 2 AA2 GLU A 407 LYS A 412 1 6
HELIX 3 AA3 ASN A 425 ASP A 437 1 13
HELIX 4 AA4 ALA A 438 GLY A 446 1 9
SHEET 1 AA1 8 SER A 322 PHE A 325 0
SHEET 2 AA1 8 PHE A 328 GLY A 335 -1 O PHE A 330 N PHE A 323
SHEET 3 AA1 8 GLU A 361 VAL A 366 -1 O VAL A 366 N THR A 329
SHEET 4 AA1 8 ALA A 370 ALA A 377 -1 O LEU A 374 N PHE A 363
SHEET 5 AA1 8 ARG A 380 GLY A 388 -1 O SER A 387 N THR A 371
SHEET 6 AA1 8 VAL A 474 SER A 477 1 O ARG A 475 N LEU A 384
SHEET 7 AA1 8 MET A 456 ILE A 459 -1 N ILE A 457 O VAL A 476
SHEET 8 AA1 8 PRO A 465 SER A 466 -1 O SER A 466 N GLY A 458
SHEET 1 AA2 2 VAL A 338 LEU A 345 0
SHEET 2 AA2 2 THR A 351 GLU A 358 -1 O ILE A 354 N GLU A 342
SHEET 1 AA3 2 ILE A 447 PRO A 449 0
SHEET 2 AA3 2 MET A 469 LEU A 471 -1 O SER A 470 N GLU A 448
SITE 1 AC1 19 ILE A 319 SER A 320 PHE A 323 SER A 324
SITE 2 AC1 19 ARG A 332 SER A 337 ARG A 355 HIS A 357
SITE 3 AC1 19 GLU A 361 PHE A 363 LYS A 376 PHE A 404
SITE 4 AC1 19 GLN A 406 ASN A 425 MET A 427 HOH A 611
SITE 5 AC1 19 HOH A 645 HOH A 671 HOH A 681
SITE 1 AC2 7 GLY A 327 GLY A 367 ARG A 368 ARG A 369
SITE 2 AC2 7 ALA A 370 GLU A 396 HOH A 619
SITE 1 AC3 8 GLN A 392 ILE A 399 GLN A 435 LYS A 436
SITE 2 AC3 8 ASP A 437 ALA A 438 HOH A 601 HOH A 657
CRYST1 62.490 62.490 69.970 90.00 90.00 120.00 P 61 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016003 0.009239 0.000000 0.00000
SCALE2 0.000000 0.018478 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014292 0.00000