HEADER OXIDOREDUCTASE 01-NOV-17 6EVG TITLE STRUCTURAL AND FUNCTIONAL CHARACTERISATION OF A BACTERIAL LACCASE-LIKE TITLE 2 MULTI-COPPER OXIDASE CUEO FROM LIGNIN-DEGRADING BACTERIUM TITLE 3 OCHROBACTRUM SP. WITH OXIDASE ACTIVITY TOWARDS LIGNIN MODEL COMPOUNDS TITLE 4 AND LIGNOSULFONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MULTI-COPPER OXIDASE CUEO; COMPND 3 CHAIN: A; COMPND 4 EC: 1.10.3.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OCHROBACTRUM; SOURCE 3 ORGANISM_TAXID: 528; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET151 KEYWDS LACCASE, OCHROBACTRUM, LIGNIN DEGRADATION, COPPER PROTEIN, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR V.FULOP,R.WILKINSON REVDAT 3 17-JAN-24 6EVG 1 REMARK REVDAT 2 16-MAY-18 6EVG 1 COMPND JRNL HETNAM REVDAT 1 11-APR-18 6EVG 0 JRNL AUTH R.S.GRANJA-TRAVEZ,R.C.WILKINSON,G.F.PERSINOTI,F.M.SQUINA, JRNL AUTH 2 V.FULOP,T.D.H.BUGG JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERISATION OF MULTI-COPPER JRNL TITL 2 OXIDASE CUEO FROM LIGNIN-DEGRADING BACTERIUM OCHROBACTRUM JRNL TITL 3 SP. REVEAL ITS ACTIVITY TOWARDS LIGNIN MODEL COMPOUNDS AND JRNL TITL 4 LIGNOSULFONATE. JRNL REF FEBS J. V. 285 1684 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 29575798 JRNL DOI 10.1111/FEBS.14437 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 5.8.0171 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 88.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 155475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.149 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6517 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11395 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 493 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3433 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 475 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.025 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.026 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.020 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.950 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.979 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3522 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3276 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4771 ; 1.862 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7599 ; 1.054 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 442 ; 6.597 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;36.028 ;23.951 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 579 ;10.694 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;20.779 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 519 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3947 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 701 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1774 ; 1.176 ; 1.140 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1773 ; 1.173 ; 1.140 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2214 ; 1.527 ; 1.725 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2215 ; 1.528 ; 1.725 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1748 ; 1.869 ; 1.412 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1748 ; 1.869 ; 1.412 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2558 ; 2.257 ; 2.007 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3714 ; 3.078 ;15.327 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3593 ; 2.626 ;14.450 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6798 ; 3.409 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 328 ;21.668 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6866 ; 7.707 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.30 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6EVG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200007308. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 161992 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 89.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.720 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3PAV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MIB BUFFER PH 8, 25% PEG 1500, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.15500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 ASP A 2 REMARK 465 ALA A 3 REMARK 465 HIS A 4 REMARK 465 GLN A 5 REMARK 465 LYS A 6 REMARK 465 MET A 7 REMARK 465 GLY A 8 REMARK 465 HIS A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 THR A 13 REMARK 465 PRO A 14 REMARK 465 SER A 15 REMARK 465 THR A 16 REMARK 465 ALA A 17 REMARK 465 PRO A 18 REMARK 465 THR A 19 REMARK 465 GLY A 20 REMARK 465 ARG A 21 REMARK 465 ALA A 350 REMARK 465 LYS A 351 REMARK 465 LEU A 352 REMARK 465 SER A 353 REMARK 465 ALA A 354 REMARK 465 ASP A 355 REMARK 465 PRO A 356 REMARK 465 HIS A 357 REMARK 465 ALA A 358 REMARK 465 GLY A 359 REMARK 465 HIS A 360 REMARK 465 ASN A 361 REMARK 465 MET A 362 REMARK 465 GLY A 363 REMARK 465 ASN A 364 REMARK 465 MET A 365 REMARK 465 ASP A 366 REMARK 465 MET A 367 REMARK 465 GLY A 368 REMARK 465 SER A 369 REMARK 465 MET A 370 REMARK 465 GLN A 371 REMARK 465 SER A 372 REMARK 465 GLY A 373 REMARK 465 ALA A 374 REMARK 465 MET A 375 REMARK 465 ASP A 376 REMARK 465 HIS A 377 REMARK 465 ASP A 378 REMARK 465 MET A 379 REMARK 465 HIS A 380 REMARK 465 GLY A 381 REMARK 465 ALA A 382 REMARK 465 ARG A 383 REMARK 465 SER A 384 REMARK 465 SER A 385 REMARK 465 ALA A 386 REMARK 465 ASP A 387 REMARK 465 ALA A 388 REMARK 465 GLY A 389 REMARK 465 PRO A 390 REMARK 465 ALA A 391 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 199 O HOH A 701 1.56 REMARK 500 O HOH A 709 O HOH A 1043 2.01 REMARK 500 O HOH A 945 O HOH A 971 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 74 CG GLU A 74 CD 0.095 REMARK 500 GLU A 182 CD GLU A 182 OE2 0.079 REMARK 500 ILE A 208 CA ILE A 208 CB 0.159 REMARK 500 GLU A 496 CD GLU A 496 OE2 -0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 199 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 340 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 412 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 444 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 477 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 478 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 478 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 64 -152.19 57.94 REMARK 500 ASN A 107 58.98 -146.57 REMARK 500 GLU A 164 16.99 -149.76 REMARK 500 ALA A 230 -36.90 -152.72 REMARK 500 SER A 248 -155.61 -125.50 REMARK 500 LYS A 430 -77.61 -128.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 223 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1170 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1171 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A1172 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A1173 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A1174 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A1175 DISTANCE = 6.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 601 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 434 ND1 REMARK 620 2 CYS A 490 SG 119.7 REMARK 620 3 HIS A 495 ND1 110.1 129.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 DBREF 6EVG A 1 507 PDB 6EVG 6EVG 1 507 SEQRES 1 A 507 GLN ASP ALA HIS GLN LYS MET GLY HIS GLY ALA ALA THR SEQRES 2 A 507 PRO SER THR ALA PRO THR GLY ARG PRO LEU PRO LEU PRO SEQRES 3 A 507 PRO LEU VAL GLU PRO ASP ALA SER GLY VAL VAL LYS LEU SEQRES 4 A 507 LYS VAL GLN THR GLY ARG HIS SER PHE GLU GLU GLY SER SEQRES 5 A 507 GLU ALA ALA SER ALA GLY ILE ASN GLY ALA TYR LEU GLY SEQRES 6 A 507 PRO LEU VAL ARG LEU LYS ASN GLY GLU THR VAL THR LEU SEQRES 7 A 507 SER VAL GLU ASN GLY MET ASP GLU GLY THR THR LEU HIS SEQRES 8 A 507 TRP HIS GLY LEU PHE VAL PRO SER ILE LEU ASP GLY GLY SEQRES 9 A 507 PRO HIS ASN VAL ILE ALA ALA GLY GLU ALA TRP LYS PRO SEQRES 10 A 507 GLU VAL LYS ILE GLN GLN PRO ALA SER PHE ASN TRP PHE SEQRES 11 A 507 HIS PRO HIS LEU HIS GLY ASN THR ALA ARG GLN ALA HIS SEQRES 12 A 507 LEU GLY ILE ALA GLY LEU MET VAL VAL THR ASP GLY LYS SEQRES 13 A 507 ASP ALA GLU ARG GLY LEU PRO GLU ASP TYR GLY VAL ASP SEQRES 14 A 507 ASP ILE PRO LEU VAL LEU GLN ASP ARG ARG VAL ILE GLU SEQRES 15 A 507 GLY ASP LYS VAL TYR GLU PRO ASP ILE MET ASP LEU MET SEQRES 16 A 507 HIS GLY PHE ARG GLY GLY ASN LEU ILE VAL ASN GLY ILE SEQRES 17 A 507 VAL SER PRO GLU ALA ARG VAL PRO ALA SER ILE VAL ARG SEQRES 18 A 507 LEU ARG ILE LEU ASN GLY ALA ASN ALA ARG ASN PHE HIS SEQRES 19 A 507 VAL ARG LEU SER ASP ASN ARG PRO LEU LEU VAL VAL ALA SEQRES 20 A 507 SER ASP GLY GLY PHE ILE GLY ASN PRO GLU PRO VAL GLU SEQRES 21 A 507 ARG LEU THR ILE SER PRO GLY GLU ARG TYR GLU VAL LEU SEQRES 22 A 507 VAL ASP PHE SER LYS GLY GLU ALA THR ASP LEU LEU THR SEQRES 23 A 507 TYR GLY ASP ASP SER GLY GLY ASP ASP LEU HIS LEU MET SEQRES 24 A 507 ARG PHE VAL VAL ASP ALA ALA LEU GLN GLY LYS VAL THR SEQRES 25 A 507 LYS ARG PRO ASP ARG LEU ASP GLY PRO ASP ALA PRO ASP SEQRES 26 A 507 GLU LYS LEU SER VAL LYS ARG ARG SER PHE PHE PHE ASP SEQRES 27 A 507 GLU ARG MET ALA GLU ASN MET LYS LEU MET MET ALA LYS SEQRES 28 A 507 LEU SER ALA ASP PRO HIS ALA GLY HIS ASN MET GLY ASN SEQRES 29 A 507 MET ASP MET GLY SER MET GLN SER GLY ALA MET ASP HIS SEQRES 30 A 507 ASP MET HIS GLY ALA ARG SER SER ALA ASP ALA GLY PRO SEQRES 31 A 507 ALA LEU GLU ALA LEU THR SER GLY VAL GLU MET ALA ILE SEQRES 32 A 507 ALA GLY LYS PRO PHE ASP MET ASP ARG ILE ASP VAL GLU SEQRES 33 A 507 ALA LYS LEU GLY SER TRP GLU ILE TRP ASP LEU THR THR SEQRES 34 A 507 LYS GLU MET PRO HIS PRO PHE HIS ILE HIS GLY ALA SER SEQRES 35 A 507 PHE ARG ILE LEU SER LEU ASN GLY LYS ALA PRO PRO ALA SEQRES 36 A 507 HIS GLN SER GLY TRP LYS ASP THR ALA LEU ILE ASP GLY SEQRES 37 A 507 LYS ALA GLU ILE LEU VAL HIS PHE ASP ARG GLU ALA VAL SEQRES 38 A 507 LYS SER HIS PRO PHE MET PHE HIS CYS HIS VAL LEU GLU SEQRES 39 A 507 HIS GLU ASP VAL GLY MET MET ALA GLN PHE VAL THR VAL HET CU A 601 1 HET EDO A 602 4 HET EDO A 603 4 HETNAM CU COPPER (II) ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CU CU 2+ FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *475(H2 O) HELIX 1 AA1 PRO A 98 ASP A 102 5 5 HELIX 2 AA2 ASN A 137 GLY A 145 1 9 HELIX 3 AA3 ASP A 190 GLY A 197 1 8 HELIX 4 AA4 ASP A 325 SER A 329 5 5 HELIX 5 AA5 ARG A 340 MET A 349 1 10 HELIX 6 AA6 GLU A 393 SER A 397 5 5 HELIX 7 AA7 PRO A 454 SER A 458 5 5 HELIX 8 AA8 VAL A 492 VAL A 498 1 7 SHEET 1 AA1 5 LEU A 28 VAL A 29 0 SHEET 2 AA1 5 LEU A 67 LYS A 71 1 O LEU A 67 N VAL A 29 SHEET 3 AA1 5 GLY A 148 THR A 153 1 O VAL A 151 N LEU A 70 SHEET 4 AA1 5 SER A 126 HIS A 131 -1 N ASN A 128 O MET A 150 SHEET 5 AA1 5 HIS A 91 HIS A 93 -1 N HIS A 91 O HIS A 131 SHEET 1 AA2 4 ALA A 54 ILE A 59 0 SHEET 2 AA2 4 VAL A 36 HIS A 46 -1 N GLN A 42 O GLY A 58 SHEET 3 AA2 4 THR A 75 ASN A 82 1 O SER A 79 N LEU A 39 SHEET 4 AA2 4 ALA A 114 TRP A 115 -1 O TRP A 115 N VAL A 80 SHEET 1 AA3 4 ALA A 54 ILE A 59 0 SHEET 2 AA3 4 VAL A 36 HIS A 46 -1 N GLN A 42 O GLY A 58 SHEET 3 AA3 4 THR A 75 ASN A 82 1 O SER A 79 N LEU A 39 SHEET 4 AA3 4 GLU A 118 LYS A 120 -1 O VAL A 119 N VAL A 76 SHEET 1 AA4 7 ILE A 208 VAL A 209 0 SHEET 2 AA4 7 ASN A 202 VAL A 205 -1 N VAL A 205 O ILE A 208 SHEET 3 AA4 7 ASP A 170 ARG A 178 -1 N GLN A 176 O ILE A 204 SHEET 4 AA4 7 ILE A 219 ASN A 226 1 O ARG A 223 N LEU A 173 SHEET 5 AA4 7 ARG A 269 ASP A 275 -1 O TYR A 270 N ILE A 224 SHEET 6 AA4 7 LEU A 243 SER A 248 -1 N LEU A 244 O LEU A 273 SHEET 7 AA4 7 GLY A 251 VAL A 259 -1 O VAL A 259 N LEU A 243 SHEET 1 AA5 5 GLU A 212 VAL A 215 0 SHEET 2 AA5 5 ASP A 295 VAL A 303 1 O ARG A 300 N ALA A 213 SHEET 3 AA5 5 THR A 282 TYR A 287 -1 N THR A 282 O PHE A 301 SHEET 4 AA5 5 PHE A 233 LEU A 237 -1 N ARG A 236 O LEU A 285 SHEET 5 AA5 5 LEU A 262 ILE A 264 -1 O LEU A 262 N VAL A 235 SHEET 1 AA6 4 ARG A 332 PHE A 336 0 SHEET 2 AA6 4 TRP A 422 THR A 428 1 O ASP A 426 N ARG A 333 SHEET 3 AA6 4 LYS A 469 HIS A 475 -1 O VAL A 474 N GLU A 423 SHEET 4 AA6 4 SER A 442 LEU A 448 -1 N SER A 442 O HIS A 475 SHEET 1 AA7 5 VAL A 415 LYS A 418 0 SHEET 2 AA7 5 MET A 501 VAL A 507 1 O VAL A 505 N ALA A 417 SHEET 3 AA7 5 PHE A 486 CYS A 490 -1 N PHE A 486 O PHE A 504 SHEET 4 AA7 5 HIS A 434 ILE A 438 -1 N HIS A 437 O HIS A 489 SHEET 5 AA7 5 THR A 463 ILE A 466 -1 O ALA A 464 N PHE A 436 LINK ND1 HIS A 434 CU CU A 601 1555 1555 1.99 LINK SG CYS A 490 CU CU A 601 1555 1555 2.16 LINK ND1 HIS A 495 CU CU A 601 1555 1555 2.00 SITE 1 AC1 4 HIS A 434 CYS A 490 HIS A 495 MET A 500 SITE 1 AC2 6 ASP A 102 GLY A 103 GLY A 104 HIS A 133 SITE 2 AC2 6 HIS A 439 PHE A 486 SITE 1 AC3 6 GLU A 268 GLN A 457 ALA A 464 LEU A 465 SITE 2 AC3 6 HOH A 815 HOH A 976 CRYST1 47.330 48.310 88.850 90.00 93.78 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021128 0.000000 0.001396 0.00000 SCALE2 0.000000 0.020700 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011279 0.00000