data_6EVO # _entry.id 6EVO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.299 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6EVO WWPDB D_1200007325 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB '6EVL is the apo form of this domain.' 6EVL unspecified PDB '6EVM is the same domain complexed with Pro-9.' 6EVM unspecified PDB '6EVN is the same domain complexed with Pro-Pro-Gly-Pro-Ala-Gly-Pro-Pro-Gly.' 6EVN unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6EVO _pdbx_database_status.recvd_initial_deposition_date 2017-11-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Murthy, A.V.' 1 ? 'Sulu, R.' 2 ? 'Koski, M.K.' 3 ? 'Wierenga, R.K.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Protein Sci.' _citation.journal_id_ASTM PRCIEI _citation.journal_id_CSD 0795 _citation.journal_id_ISSN 1469-896X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 27 _citation.language ? _citation.page_first 1692 _citation.page_last 1703 _citation.title ;Structural enzymology binding studies of the peptide-substrate-binding domain of human collagen prolyl 4-hydroxylase (type-II): High affinity peptides have a PxGP sequence motif. ; _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/pro.3450 _citation.pdbx_database_id_PubMed 30168208 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Murthy, A.V.' 1 ? primary 'Sulu, R.' 2 ? primary 'Koski, M.K.' 3 ? primary 'Tu, H.' 4 ? primary 'Anantharajan, J.' 5 ? primary 'Sah-Teli, S.K.' 6 ? primary 'Myllyharju, J.' 7 ? primary 'Wierenga, R.K.' 8 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 6EVO _cell.details ? _cell.formula_units_Z ? _cell.length_a 55.382 _cell.length_a_esd ? _cell.length_b 55.382 _cell.length_b_esd ? _cell.length_c 72.994 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Prolyl 4-hydroxylase subunit alpha-2' 11920.266 1 1.14.11.2 ? ? ? 2 polymer syn PRO-PRO-GLY-PRO-ARG-GLY-PRO-PRO-GLY 831.938 1 ? ? ? 'Synthetic peptide, commercial.' 3 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 4 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 3 ? ? ? ? 5 water nat water 18.015 82 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '4-PH alpha-2,Procollagen-proline,2-oxoglutarate-4-dioxygenase subunit alpha-2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MHHHHHHMLSVDDCFGMGRSAYNEGDYYHTVLWMEQVLKQLDAGEEATTTKSQVLDYLSYAVFQLGDLHRALELTRRLLS LDPSHERAGGNLRYFEQLLEEE ; ;MHHHHHHMLSVDDCFGMGRSAYNEGDYYHTVLWMEQVLKQLDAGEEATTTKSQVLDYLSYAVFQLGDLHRALELTRRLLS LDPSHERAGGNLRYFEQLLEEE ; A ? 2 'polypeptide(L)' no no PPGPRGPPG PPGPRGPPG C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 MET n 1 9 LEU n 1 10 SER n 1 11 VAL n 1 12 ASP n 1 13 ASP n 1 14 CYS n 1 15 PHE n 1 16 GLY n 1 17 MET n 1 18 GLY n 1 19 ARG n 1 20 SER n 1 21 ALA n 1 22 TYR n 1 23 ASN n 1 24 GLU n 1 25 GLY n 1 26 ASP n 1 27 TYR n 1 28 TYR n 1 29 HIS n 1 30 THR n 1 31 VAL n 1 32 LEU n 1 33 TRP n 1 34 MET n 1 35 GLU n 1 36 GLN n 1 37 VAL n 1 38 LEU n 1 39 LYS n 1 40 GLN n 1 41 LEU n 1 42 ASP n 1 43 ALA n 1 44 GLY n 1 45 GLU n 1 46 GLU n 1 47 ALA n 1 48 THR n 1 49 THR n 1 50 THR n 1 51 LYS n 1 52 SER n 1 53 GLN n 1 54 VAL n 1 55 LEU n 1 56 ASP n 1 57 TYR n 1 58 LEU n 1 59 SER n 1 60 TYR n 1 61 ALA n 1 62 VAL n 1 63 PHE n 1 64 GLN n 1 65 LEU n 1 66 GLY n 1 67 ASP n 1 68 LEU n 1 69 HIS n 1 70 ARG n 1 71 ALA n 1 72 LEU n 1 73 GLU n 1 74 LEU n 1 75 THR n 1 76 ARG n 1 77 ARG n 1 78 LEU n 1 79 LEU n 1 80 SER n 1 81 LEU n 1 82 ASP n 1 83 PRO n 1 84 SER n 1 85 HIS n 1 86 GLU n 1 87 ARG n 1 88 ALA n 1 89 GLY n 1 90 GLY n 1 91 ASN n 1 92 LEU n 1 93 ARG n 1 94 TYR n 1 95 PHE n 1 96 GLU n 1 97 GLN n 1 98 LEU n 1 99 LEU n 1 100 GLU n 1 101 GLU n 1 102 GLU n 2 1 PRO n 2 2 PRO n 2 3 GLY n 2 4 PRO n 2 5 ARG n 2 6 GLY n 2 7 PRO n 2 8 PRO n 2 9 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 102 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'P4HA2, UNQ290/PRO330' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta (DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type 'plasmid pET22b(+)' _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP P4HA2_HUMAN O15460 ? 1 ;MLSVDDCFGMGRSAYNEGDYYHTVLWMEQVLKQLDAGEEATTTKSQVLDYLSYAVFQLGDLHRALELTRRLLSLDPSHER AGGNLRYFEQLLEEE ; 163 2 PDB 6EVO 6EVO ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6EVO A 8 ? 102 ? O15460 163 ? 257 ? 144 238 2 2 6EVO C 1 ? 9 ? 6EVO 1 ? 9 ? 1 9 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6EVO MET A 1 ? UNP O15460 ? ? 'initiating methionine' 137 1 1 6EVO HIS A 2 ? UNP O15460 ? ? 'expression tag' 138 2 1 6EVO HIS A 3 ? UNP O15460 ? ? 'expression tag' 139 3 1 6EVO HIS A 4 ? UNP O15460 ? ? 'expression tag' 140 4 1 6EVO HIS A 5 ? UNP O15460 ? ? 'expression tag' 141 5 1 6EVO HIS A 6 ? UNP O15460 ? ? 'expression tag' 142 6 1 6EVO HIS A 7 ? UNP O15460 ? ? 'expression tag' 143 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6EVO _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.72 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 54.73 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '2.45 M ammonium sulphate, 10% DMSO, 5 mM PPGPRGPPG, 10 mM EDTA, 100 mM MOPS' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 4M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-04-30 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'C(110)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9677 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE ID30B' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9677 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ID30B _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6EVO _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.55 _reflns.d_resolution_low 48.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 19323 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.4 _reflns.pdbx_Rmerge_I_obs 0.054 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 19.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.020 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.55 _reflns_shell.d_res_low 1.58 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 157 _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.035 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 8.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.366 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6EVO _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.550 _refine.ls_d_res_low 47.962 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 19238 _refine.ls_number_reflns_R_free 1925 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.64 _refine.ls_percent_reflns_R_free 10.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1602 _refine.ls_R_factor_R_free 0.1802 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1579 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 18.41 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.14 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 829 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 82 _refine_hist.number_atoms_total 933 _refine_hist.d_res_high 1.550 _refine_hist.d_res_low 47.962 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 908 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.951 ? 1233 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 14.863 ? 552 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.049 ? 127 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 162 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.5500 1.5888 . . 134 1213 100.00 . . . 0.2477 . 0.2327 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5888 1.6317 . . 137 1218 100.00 . . . 0.2468 . 0.2203 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6317 1.6797 . . 139 1220 100.00 . . . 0.2424 . 0.1969 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6797 1.7340 . . 133 1220 100.00 . . . 0.2361 . 0.1975 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7340 1.7959 . . 137 1236 100.00 . . . 0.2412 . 0.1841 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7959 1.8678 . . 130 1215 100.00 . . . 0.1947 . 0.1809 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8678 1.9529 . . 135 1215 98.00 . . . 0.2339 . 0.2109 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9529 2.0558 . . 137 1215 100.00 . . . 0.1851 . 0.1469 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0558 2.1846 . . 138 1245 100.00 . . . 0.1636 . 0.1370 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1846 2.3533 . . 139 1219 99.00 . . . 0.1829 . 0.1486 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3533 2.5901 . . 133 1233 99.00 . . . 0.1549 . 0.1413 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5901 2.9649 . . 143 1250 100.00 . . . 0.1909 . 0.1484 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9649 3.7352 . . 141 1269 100.00 . . . 0.1531 . 0.1470 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.7352 47.9852 . . 149 1345 100.00 . . . 0.1727 . 0.1568 . . . . . . . . . . # _struct.entry_id 6EVO _struct.title ;Crystal structure the peptide-substrate-binding domain of human type II collagen prolyl 4-hydroxylase complexed with Pro-Pro-Gly-Pro-Arg-Gly-Pro-Pro-Gly. ; _struct.pdbx_descriptor 'Prolyl 4-hydroxylase subunit alpha-2 (E.C.1.14.11.2), PRO-PRO-GLY-PRO-ARG-GLY-PRO-PRO-GLY' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6EVO _struct_keywords.text 'tetratricopeptide repeat, collagen synthesis, prolyl 4-hydroxylase, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 10 ? GLU A 24 ? SER A 146 GLU A 160 1 ? 15 HELX_P HELX_P2 AA2 ASP A 26 ? ALA A 43 ? ASP A 162 ALA A 179 1 ? 18 HELX_P HELX_P3 AA3 THR A 50 ? LEU A 65 ? THR A 186 LEU A 201 1 ? 16 HELX_P HELX_P4 AA4 ASP A 67 ? ASP A 82 ? ASP A 203 ASP A 218 1 ? 16 HELX_P HELX_P5 AA5 HIS A 85 ? LEU A 99 ? HIS A 221 LEU A 235 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 301 ? 2 'binding site for residue SO4 A 301' AC2 Software A SO4 302 ? 6 'binding site for residue SO4 A 302' AC3 Software A DMS 303 ? 3 'binding site for residue DMS A 303' AC4 Software A DMS 304 ? 3 'binding site for residue DMS A 304' AC5 Software A DMS 305 ? 5 'binding site for residue DMS A 305' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ARG A 70 ? ARG A 206 . ? 1_555 ? 2 AC1 2 ARG A 77 ? ARG A 213 . ? 1_555 ? 3 AC2 6 GLN A 53 ? GLN A 189 . ? 1_555 ? 4 AC2 6 TYR A 57 ? TYR A 193 . ? 1_555 ? 5 AC2 6 LEU A 98 ? LEU A 234 . ? 3_455 ? 6 AC2 6 LEU A 99 ? LEU A 235 . ? 3_455 ? 7 AC2 6 GLU A 100 ? GLU A 236 . ? 3_455 ? 8 AC2 6 HOH H . ? HOH A 439 . ? 1_555 ? 9 AC3 3 TYR A 22 ? TYR A 158 . ? 1_555 ? 10 AC3 3 TYR A 27 ? TYR A 163 . ? 1_555 ? 11 AC3 3 DMS G . ? DMS A 305 . ? 1_555 ? 12 AC4 3 TRP A 33 ? TRP A 169 . ? 1_555 ? 13 AC4 3 GLN A 36 ? GLN A 172 . ? 1_555 ? 14 AC4 3 HOH H . ? HOH A 403 . ? 1_555 ? 15 AC5 5 TYR A 22 ? TYR A 158 . ? 1_555 ? 16 AC5 5 TYR A 60 ? TYR A 196 . ? 1_555 ? 17 AC5 5 DMS E . ? DMS A 303 . ? 1_555 ? 18 AC5 5 GLY B 6 ? GLY C 6 . ? 1_555 ? 19 AC5 5 PRO B 7 ? PRO C 7 . ? 1_555 ? # _atom_sites.entry_id 6EVO _atom_sites.fract_transf_matrix[1][1] 0.018056 _atom_sites.fract_transf_matrix[1][2] 0.010425 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020850 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013700 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 137 ? ? ? A . n A 1 2 HIS 2 138 ? ? ? A . n A 1 3 HIS 3 139 ? ? ? A . n A 1 4 HIS 4 140 ? ? ? A . n A 1 5 HIS 5 141 ? ? ? A . n A 1 6 HIS 6 142 ? ? ? A . n A 1 7 HIS 7 143 ? ? ? A . n A 1 8 MET 8 144 144 MET MET A . n A 1 9 LEU 9 145 145 LEU LEU A . n A 1 10 SER 10 146 146 SER SER A . n A 1 11 VAL 11 147 147 VAL VAL A . n A 1 12 ASP 12 148 148 ASP ASP A . n A 1 13 ASP 13 149 149 ASP ASP A . n A 1 14 CYS 14 150 150 CYS CYS A . n A 1 15 PHE 15 151 151 PHE PHE A . n A 1 16 GLY 16 152 152 GLY GLY A . n A 1 17 MET 17 153 153 MET MET A . n A 1 18 GLY 18 154 154 GLY GLY A . n A 1 19 ARG 19 155 155 ARG ARG A . n A 1 20 SER 20 156 156 SER SER A . n A 1 21 ALA 21 157 157 ALA ALA A . n A 1 22 TYR 22 158 158 TYR TYR A . n A 1 23 ASN 23 159 159 ASN ASN A . n A 1 24 GLU 24 160 160 GLU GLU A . n A 1 25 GLY 25 161 161 GLY GLY A . n A 1 26 ASP 26 162 162 ASP ASP A . n A 1 27 TYR 27 163 163 TYR TYR A . n A 1 28 TYR 28 164 164 TYR TYR A . n A 1 29 HIS 29 165 165 HIS HIS A . n A 1 30 THR 30 166 166 THR THR A . n A 1 31 VAL 31 167 167 VAL VAL A . n A 1 32 LEU 32 168 168 LEU LEU A . n A 1 33 TRP 33 169 169 TRP TRP A . n A 1 34 MET 34 170 170 MET MET A . n A 1 35 GLU 35 171 171 GLU GLU A . n A 1 36 GLN 36 172 172 GLN GLN A . n A 1 37 VAL 37 173 173 VAL VAL A . n A 1 38 LEU 38 174 174 LEU LEU A . n A 1 39 LYS 39 175 175 LYS LYS A . n A 1 40 GLN 40 176 176 GLN GLN A . n A 1 41 LEU 41 177 177 LEU LEU A . n A 1 42 ASP 42 178 178 ASP ASP A . n A 1 43 ALA 43 179 179 ALA ALA A . n A 1 44 GLY 44 180 180 GLY GLY A . n A 1 45 GLU 45 181 181 GLU GLU A . n A 1 46 GLU 46 182 182 GLU GLU A . n A 1 47 ALA 47 183 183 ALA ALA A . n A 1 48 THR 48 184 184 THR THR A . n A 1 49 THR 49 185 185 THR THR A . n A 1 50 THR 50 186 186 THR THR A . n A 1 51 LYS 51 187 187 LYS LYS A . n A 1 52 SER 52 188 188 SER SER A . n A 1 53 GLN 53 189 189 GLN GLN A . n A 1 54 VAL 54 190 190 VAL VAL A . n A 1 55 LEU 55 191 191 LEU LEU A . n A 1 56 ASP 56 192 192 ASP ASP A . n A 1 57 TYR 57 193 193 TYR TYR A . n A 1 58 LEU 58 194 194 LEU LEU A . n A 1 59 SER 59 195 195 SER SER A . n A 1 60 TYR 60 196 196 TYR TYR A . n A 1 61 ALA 61 197 197 ALA ALA A . n A 1 62 VAL 62 198 198 VAL VAL A . n A 1 63 PHE 63 199 199 PHE PHE A . n A 1 64 GLN 64 200 200 GLN GLN A . n A 1 65 LEU 65 201 201 LEU LEU A . n A 1 66 GLY 66 202 202 GLY GLY A . n A 1 67 ASP 67 203 203 ASP ASP A . n A 1 68 LEU 68 204 204 LEU LEU A . n A 1 69 HIS 69 205 205 HIS HIS A . n A 1 70 ARG 70 206 206 ARG ARG A . n A 1 71 ALA 71 207 207 ALA ALA A . n A 1 72 LEU 72 208 208 LEU LEU A . n A 1 73 GLU 73 209 209 GLU GLU A . n A 1 74 LEU 74 210 210 LEU LEU A . n A 1 75 THR 75 211 211 THR THR A . n A 1 76 ARG 76 212 212 ARG ARG A . n A 1 77 ARG 77 213 213 ARG ARG A . n A 1 78 LEU 78 214 214 LEU LEU A . n A 1 79 LEU 79 215 215 LEU LEU A . n A 1 80 SER 80 216 216 SER SER A . n A 1 81 LEU 81 217 217 LEU LEU A . n A 1 82 ASP 82 218 218 ASP ASP A . n A 1 83 PRO 83 219 219 PRO PRO A . n A 1 84 SER 84 220 220 SER SER A . n A 1 85 HIS 85 221 221 HIS HIS A . n A 1 86 GLU 86 222 222 GLU GLU A . n A 1 87 ARG 87 223 223 ARG ARG A . n A 1 88 ALA 88 224 224 ALA ALA A . n A 1 89 GLY 89 225 225 GLY GLY A . n A 1 90 GLY 90 226 226 GLY GLY A . n A 1 91 ASN 91 227 227 ASN ASN A . n A 1 92 LEU 92 228 228 LEU LEU A . n A 1 93 ARG 93 229 229 ARG ARG A . n A 1 94 TYR 94 230 230 TYR TYR A . n A 1 95 PHE 95 231 231 PHE PHE A . n A 1 96 GLU 96 232 232 GLU GLU A . n A 1 97 GLN 97 233 233 GLN GLN A . n A 1 98 LEU 98 234 234 LEU LEU A . n A 1 99 LEU 99 235 235 LEU LEU A . n A 1 100 GLU 100 236 236 GLU GLU A . n A 1 101 GLU 101 237 237 GLU GLU A . n A 1 102 GLU 102 238 238 GLU GLU A . n B 2 1 PRO 1 1 1 PRO PRO C . n B 2 2 PRO 2 2 2 PRO PRO C . n B 2 3 GLY 3 3 3 GLY GLY C . n B 2 4 PRO 4 4 4 PRO PRO C . n B 2 5 ARG 5 5 5 ARG ARG C . n B 2 6 GLY 6 6 6 GLY GLY C . n B 2 7 PRO 7 7 7 PRO PRO C . n B 2 8 PRO 8 8 8 PRO PRO C . n B 2 9 GLY 9 9 9 GLY GLY C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 301 1 SO4 SO4 A . D 3 SO4 1 302 2 SO4 SO4 A . E 4 DMS 1 303 1 DMS DMS A . F 4 DMS 1 304 2 DMS DMS A . G 4 DMS 1 305 3 DMS DMS A . H 5 HOH 1 401 52 HOH HOH A . H 5 HOH 2 402 56 HOH HOH A . H 5 HOH 3 403 42 HOH HOH A . H 5 HOH 4 404 53 HOH HOH A . H 5 HOH 5 405 46 HOH HOH A . H 5 HOH 6 406 13 HOH HOH A . H 5 HOH 7 407 27 HOH HOH A . H 5 HOH 8 408 49 HOH HOH A . H 5 HOH 9 409 8 HOH HOH A . H 5 HOH 10 410 34 HOH HOH A . H 5 HOH 11 411 25 HOH HOH A . H 5 HOH 12 412 1 HOH HOH A . H 5 HOH 13 413 24 HOH HOH A . H 5 HOH 14 414 38 HOH HOH A . H 5 HOH 15 415 39 HOH HOH A . H 5 HOH 16 416 45 HOH HOH A . H 5 HOH 17 417 36 HOH HOH A . H 5 HOH 18 418 55 HOH HOH A . H 5 HOH 19 419 5 HOH HOH A . H 5 HOH 20 420 17 HOH HOH A . H 5 HOH 21 421 18 HOH HOH A . H 5 HOH 22 422 16 HOH HOH A . H 5 HOH 23 423 11 HOH HOH A . H 5 HOH 24 424 51 HOH HOH A . H 5 HOH 25 425 28 HOH HOH A . H 5 HOH 26 426 50 HOH HOH A . H 5 HOH 27 427 14 HOH HOH A . H 5 HOH 28 428 4 HOH HOH A . H 5 HOH 29 429 9 HOH HOH A . H 5 HOH 30 430 7 HOH HOH A . H 5 HOH 31 431 79 HOH HOH A . H 5 HOH 32 432 75 HOH HOH A . H 5 HOH 33 433 21 HOH HOH A . H 5 HOH 34 434 72 HOH HOH A . H 5 HOH 35 435 23 HOH HOH A . H 5 HOH 36 436 66 HOH HOH A . H 5 HOH 37 437 12 HOH HOH A . H 5 HOH 38 438 63 HOH HOH A . H 5 HOH 39 439 3 HOH HOH A . H 5 HOH 40 440 22 HOH HOH A . H 5 HOH 41 441 2 HOH HOH A . H 5 HOH 42 442 26 HOH HOH A . H 5 HOH 43 443 47 HOH HOH A . H 5 HOH 44 444 35 HOH HOH A . H 5 HOH 45 445 6 HOH HOH A . H 5 HOH 46 446 10 HOH HOH A . H 5 HOH 47 447 19 HOH HOH A . H 5 HOH 48 448 65 HOH HOH A . H 5 HOH 49 449 32 HOH HOH A . H 5 HOH 50 450 20 HOH HOH A . H 5 HOH 51 451 64 HOH HOH A . H 5 HOH 52 452 41 HOH HOH A . H 5 HOH 53 453 70 HOH HOH A . H 5 HOH 54 454 76 HOH HOH A . H 5 HOH 55 455 82 HOH HOH A . H 5 HOH 56 456 30 HOH HOH A . H 5 HOH 57 457 54 HOH HOH A . H 5 HOH 58 458 62 HOH HOH A . H 5 HOH 59 459 78 HOH HOH A . H 5 HOH 60 460 67 HOH HOH A . H 5 HOH 61 461 81 HOH HOH A . H 5 HOH 62 462 59 HOH HOH A . H 5 HOH 63 463 80 HOH HOH A . H 5 HOH 64 464 61 HOH HOH A . H 5 HOH 65 465 40 HOH HOH A . H 5 HOH 66 466 48 HOH HOH A . H 5 HOH 67 467 71 HOH HOH A . H 5 HOH 68 468 58 HOH HOH A . H 5 HOH 69 469 69 HOH HOH A . H 5 HOH 70 470 44 HOH HOH A . H 5 HOH 71 471 60 HOH HOH A . H 5 HOH 72 472 15 HOH HOH A . H 5 HOH 73 473 74 HOH HOH A . H 5 HOH 74 474 31 HOH HOH A . H 5 HOH 75 475 57 HOH HOH A . H 5 HOH 76 476 37 HOH HOH A . H 5 HOH 77 477 29 HOH HOH A . H 5 HOH 78 478 68 HOH HOH A . H 5 HOH 79 479 77 HOH HOH A . H 5 HOH 80 480 33 HOH HOH A . I 5 HOH 1 101 43 HOH HOH C . I 5 HOH 2 102 73 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1930 ? 1 MORE -18 ? 1 'SSA (A^2)' 5980 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 473 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-09-12 2 'Structure model' 1 1 2018-10-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.11.1_2575: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 446 ? ? O A HOH 467 ? ? 1.64 2 1 O A HOH 448 ? ? O A HOH 451 ? ? 1.79 3 1 O A HOH 431 ? ? O A HOH 463 ? ? 1.95 4 1 OE2 A GLU 236 ? ? O A HOH 402 ? ? 2.15 5 1 O A HOH 432 ? ? O A HOH 459 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 448 ? ? 1_555 O A HOH 460 ? ? 3_455 1.87 2 1 O A HOH 453 ? ? 1_555 O A HOH 467 ? ? 2_564 2.08 3 1 O A HOH 436 ? ? 1_555 O A HOH 448 ? ? 6_444 2.09 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 218 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -156.17 _pdbx_validate_torsion.psi 69.55 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 137 ? A MET 1 2 1 Y 1 A HIS 138 ? A HIS 2 3 1 Y 1 A HIS 139 ? A HIS 3 4 1 Y 1 A HIS 140 ? A HIS 4 5 1 Y 1 A HIS 141 ? A HIS 5 6 1 Y 1 A HIS 142 ? A HIS 6 7 1 Y 1 A HIS 143 ? A HIS 7 # _pdbx_audit_support.funding_organization 'Sigrid Juselius Foundation' _pdbx_audit_support.country Finland _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 'DIMETHYL SULFOXIDE' DMS 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'light scattering' _pdbx_struct_assembly_auth_evidence.details ? #