data_6EVQ # _entry.id 6EVQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6EVQ WWPDB D_1200007326 BMRB 34192 # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'solution NMR structure of EB1 C terminus (191-260) with a small molecule bound into the SxIP binding site' _pdbx_database_related.db_id 34192 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6EVQ _pdbx_database_status.recvd_initial_deposition_date 2017-11-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Barsukov, I.L.' 1 ? 'Almeida, T.B.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2045-2322 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 7 _citation.language ? _citation.page_first 15533 _citation.page_last 15533 _citation.title 'Targeting SxIP-EB1 interaction: An integrated approach to the discovery of small molecule modulators of dynamic binding sites.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41598-017-15502-6 _citation.pdbx_database_id_PubMed 29138501 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Almeida, T.B.' 1 ? primary 'Carnell, A.J.' 2 ? primary 'Barsukov, I.L.' 3 ? primary 'Berry, N.G.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Microtubule-associated protein RP/EB family member 1' 8049.979 2 ? ? ? ? 2 non-polymer syn '(2~{R})-2-[(1-cyclopentyl-1,2,3,4-tetrazol-5-yl)sulfanyl]-~{N}-(furan-2-ylmethyl)propanamide' 321.398 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'APC-binding protein EB1,End-binding protein 1,EB1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code DEAAELMQQVKVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIPDEGG _entity_poly.pdbx_seq_one_letter_code_can DEAAELMQQVKVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIPDEGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 GLU n 1 3 ALA n 1 4 ALA n 1 5 GLU n 1 6 LEU n 1 7 MET n 1 8 GLN n 1 9 GLN n 1 10 VAL n 1 11 LYS n 1 12 VAL n 1 13 LEU n 1 14 LYS n 1 15 LEU n 1 16 THR n 1 17 VAL n 1 18 GLU n 1 19 ASP n 1 20 LEU n 1 21 GLU n 1 22 LYS n 1 23 GLU n 1 24 ARG n 1 25 ASP n 1 26 PHE n 1 27 TYR n 1 28 PHE n 1 29 GLY n 1 30 LYS n 1 31 LEU n 1 32 ARG n 1 33 ASN n 1 34 ILE n 1 35 GLU n 1 36 LEU n 1 37 ILE n 1 38 CYS n 1 39 GLN n 1 40 GLU n 1 41 ASN n 1 42 GLU n 1 43 GLY n 1 44 GLU n 1 45 ASN n 1 46 ASP n 1 47 PRO n 1 48 VAL n 1 49 LEU n 1 50 GLN n 1 51 ARG n 1 52 ILE n 1 53 VAL n 1 54 ASP n 1 55 ILE n 1 56 LEU n 1 57 TYR n 1 58 ALA n 1 59 THR n 1 60 ASP n 1 61 GLU n 1 62 GLY n 1 63 PHE n 1 64 VAL n 1 65 ILE n 1 66 PRO n 1 67 ASP n 1 68 GLU n 1 69 GLY n 1 70 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 70 _entity_src_gen.gene_src_common_name Mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Mapre1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MARE1_MOUSE _struct_ref.pdbx_db_accession Q61166 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DEAAELMQQVKVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIPDEGG _struct_ref.pdbx_align_begin 191 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6EVQ A 1 ? 70 ? Q61166 191 ? 260 ? 191 260 2 1 6EVQ B 1 ? 70 ? Q61166 191 ? 260 ? 191 260 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C05 non-polymer . '(2~{R})-2-[(1-cyclopentyl-1,2,3,4-tetrazol-5-yl)sulfanyl]-~{N}-(furan-2-ylmethyl)propanamide' ? 'C14 H19 N5 O2 S' 321.398 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 2 isotropic 2 1 1 '2D 1H-13C HSQC aliphatic' 2 isotropic 3 1 1 '2D 1H-13C HSQC aromatic' 2 isotropic 4 1 1 '3D CBCA(CO)NH' 2 isotropic 5 1 1 '3D HBHA(CO)NH' 2 isotropic 10 1 1 '3D 1H-13C NOESY aliphatic' 2 isotropic 9 1 1 '3D 1H-13C NOESY aromatic' 2 isotropic 8 1 1 '2D 1H-1H NOESY' 2 isotropic 7 1 1 '2D 1H-1H TOCSY' 2 isotropic 6 1 1 '3D HCCH-TOCSY' 2 isotropic 11 1 1 '3D 1H-15N NOESY' 2 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 50 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label H2O _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1 mM [U-13C; U-15N] EB1, 5 mM 2-(1-cyclopentyltetrazol-5-yl)sulfanyl-N-(2-furylmethyl)propanamide, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label '15N, 13C' _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AvanceIII ? Bruker 600 ? 2 AvanceIII ? Bruker 800 ? # _pdbx_nmr_refine.entry_id 6EVQ _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 6EVQ _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6EVQ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement CNS ? 'Brunger A. T. et.al.' 2 'structure calculation' ARIA ? ;Linge, O'Donoghue and Nilges ; 3 'chemical shift assignment' 'CcpNmr Analysis' ? CCPN 4 'peak picking' 'CcpNmr Analysis' ? CCPN # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6EVQ _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6EVQ _struct.title 'solution NMR structure of EB1 C terminus (191-260) with a small molecule bound into the SxIP binding site' _struct.pdbx_descriptor 'Microtubule-associated protein RP/EB family member 1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6EVQ _struct_keywords.text ;End-binding protein, EB1, microtubules, SxIP, Microtubule-associated protein RP/EB family member 1, MAPRE1, APC-binding protein EB1, PROTEIN BINDING ; _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 1 ? GLU A 42 ? ASP A 191 GLU A 232 1 ? 42 HELX_P HELX_P2 AA2 PRO A 47 ? TYR A 57 ? PRO A 237 TYR A 247 1 ? 11 HELX_P HELX_P3 AA3 GLU B 2 ? GLU B 42 ? GLU B 192 GLU B 232 1 ? 41 HELX_P HELX_P4 AA4 PRO B 47 ? TYR B 57 ? PRO B 237 TYR B 247 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A C05 301 ? 5 'binding site for residue C05 A 301' AC2 Software B C05 301 ? 5 'binding site for residue C05 B 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLU A 35 ? GLU A 225 . ? 1_555 ? 2 AC1 5 LEU A 56 ? LEU A 246 . ? 1_555 ? 3 AC1 5 TYR A 57 ? TYR A 247 . ? 1_555 ? 4 AC1 5 THR A 59 ? THR A 249 . ? 1_555 ? 5 AC1 5 TYR B 27 ? TYR B 217 . ? 1_555 ? 6 AC2 5 TYR A 27 ? TYR A 217 . ? 1_555 ? 7 AC2 5 GLU B 35 ? GLU B 225 . ? 1_555 ? 8 AC2 5 LEU B 56 ? LEU B 246 . ? 1_555 ? 9 AC2 5 TYR B 57 ? TYR B 247 . ? 1_555 ? 10 AC2 5 THR B 59 ? THR B 249 . ? 1_555 ? # _atom_sites.entry_id 6EVQ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 191 191 ASP ASP A . n A 1 2 GLU 2 192 192 GLU GLU A . n A 1 3 ALA 3 193 193 ALA ALA A . n A 1 4 ALA 4 194 194 ALA ALA A . n A 1 5 GLU 5 195 195 GLU GLU A . n A 1 6 LEU 6 196 196 LEU LEU A . n A 1 7 MET 7 197 197 MET MET A . n A 1 8 GLN 8 198 198 GLN GLN A . n A 1 9 GLN 9 199 199 GLN GLN A . n A 1 10 VAL 10 200 200 VAL VAL A . n A 1 11 LYS 11 201 201 LYS LYS A . n A 1 12 VAL 12 202 202 VAL VAL A . n A 1 13 LEU 13 203 203 LEU LEU A . n A 1 14 LYS 14 204 204 LYS LYS A . n A 1 15 LEU 15 205 205 LEU LEU A . n A 1 16 THR 16 206 206 THR THR A . n A 1 17 VAL 17 207 207 VAL VAL A . n A 1 18 GLU 18 208 208 GLU GLU A . n A 1 19 ASP 19 209 209 ASP ASP A . n A 1 20 LEU 20 210 210 LEU LEU A . n A 1 21 GLU 21 211 211 GLU GLU A . n A 1 22 LYS 22 212 212 LYS LYS A . n A 1 23 GLU 23 213 213 GLU GLU A . n A 1 24 ARG 24 214 214 ARG ARG A . n A 1 25 ASP 25 215 215 ASP ASP A . n A 1 26 PHE 26 216 216 PHE PHE A . n A 1 27 TYR 27 217 217 TYR TYR A . n A 1 28 PHE 28 218 218 PHE PHE A . n A 1 29 GLY 29 219 219 GLY GLY A . n A 1 30 LYS 30 220 220 LYS LYS A . n A 1 31 LEU 31 221 221 LEU LEU A . n A 1 32 ARG 32 222 222 ARG ARG A . n A 1 33 ASN 33 223 223 ASN ASN A . n A 1 34 ILE 34 224 224 ILE ILE A . n A 1 35 GLU 35 225 225 GLU GLU A . n A 1 36 LEU 36 226 226 LEU LEU A . n A 1 37 ILE 37 227 227 ILE ILE A . n A 1 38 CYS 38 228 228 CYS CYS A . n A 1 39 GLN 39 229 229 GLN GLN A . n A 1 40 GLU 40 230 230 GLU GLU A . n A 1 41 ASN 41 231 231 ASN ASN A . n A 1 42 GLU 42 232 232 GLU GLU A . n A 1 43 GLY 43 233 233 GLY GLY A . n A 1 44 GLU 44 234 234 GLU GLU A . n A 1 45 ASN 45 235 235 ASN ASN A . n A 1 46 ASP 46 236 236 ASP ASP A . n A 1 47 PRO 47 237 237 PRO PRO A . n A 1 48 VAL 48 238 238 VAL VAL A . n A 1 49 LEU 49 239 239 LEU LEU A . n A 1 50 GLN 50 240 240 GLN GLN A . n A 1 51 ARG 51 241 241 ARG ARG A . n A 1 52 ILE 52 242 242 ILE ILE A . n A 1 53 VAL 53 243 243 VAL VAL A . n A 1 54 ASP 54 244 244 ASP ASP A . n A 1 55 ILE 55 245 245 ILE ILE A . n A 1 56 LEU 56 246 246 LEU LEU A . n A 1 57 TYR 57 247 247 TYR TYR A . n A 1 58 ALA 58 248 248 ALA ALA A . n A 1 59 THR 59 249 249 THR THR A . n A 1 60 ASP 60 250 250 ASP ASP A . n A 1 61 GLU 61 251 251 GLU GLU A . n A 1 62 GLY 62 252 252 GLY GLY A . n A 1 63 PHE 63 253 253 PHE PHE A . n A 1 64 VAL 64 254 254 VAL VAL A . n A 1 65 ILE 65 255 255 ILE ILE A . n A 1 66 PRO 66 256 256 PRO PRO A . n A 1 67 ASP 67 257 257 ASP ASP A . n A 1 68 GLU 68 258 258 GLU GLU A . n A 1 69 GLY 69 259 259 GLY GLY A . n A 1 70 GLY 70 260 260 GLY GLY A . n B 1 1 ASP 1 191 191 ASP ASP B . n B 1 2 GLU 2 192 192 GLU GLU B . n B 1 3 ALA 3 193 193 ALA ALA B . n B 1 4 ALA 4 194 194 ALA ALA B . n B 1 5 GLU 5 195 195 GLU GLU B . n B 1 6 LEU 6 196 196 LEU LEU B . n B 1 7 MET 7 197 197 MET MET B . n B 1 8 GLN 8 198 198 GLN GLN B . n B 1 9 GLN 9 199 199 GLN GLN B . n B 1 10 VAL 10 200 200 VAL VAL B . n B 1 11 LYS 11 201 201 LYS LYS B . n B 1 12 VAL 12 202 202 VAL VAL B . n B 1 13 LEU 13 203 203 LEU LEU B . n B 1 14 LYS 14 204 204 LYS LYS B . n B 1 15 LEU 15 205 205 LEU LEU B . n B 1 16 THR 16 206 206 THR THR B . n B 1 17 VAL 17 207 207 VAL VAL B . n B 1 18 GLU 18 208 208 GLU GLU B . n B 1 19 ASP 19 209 209 ASP ASP B . n B 1 20 LEU 20 210 210 LEU LEU B . n B 1 21 GLU 21 211 211 GLU GLU B . n B 1 22 LYS 22 212 212 LYS LYS B . n B 1 23 GLU 23 213 213 GLU GLU B . n B 1 24 ARG 24 214 214 ARG ARG B . n B 1 25 ASP 25 215 215 ASP ASP B . n B 1 26 PHE 26 216 216 PHE PHE B . n B 1 27 TYR 27 217 217 TYR TYR B . n B 1 28 PHE 28 218 218 PHE PHE B . n B 1 29 GLY 29 219 219 GLY GLY B . n B 1 30 LYS 30 220 220 LYS LYS B . n B 1 31 LEU 31 221 221 LEU LEU B . n B 1 32 ARG 32 222 222 ARG ARG B . n B 1 33 ASN 33 223 223 ASN ASN B . n B 1 34 ILE 34 224 224 ILE ILE B . n B 1 35 GLU 35 225 225 GLU GLU B . n B 1 36 LEU 36 226 226 LEU LEU B . n B 1 37 ILE 37 227 227 ILE ILE B . n B 1 38 CYS 38 228 228 CYS CYS B . n B 1 39 GLN 39 229 229 GLN GLN B . n B 1 40 GLU 40 230 230 GLU GLU B . n B 1 41 ASN 41 231 231 ASN ASN B . n B 1 42 GLU 42 232 232 GLU GLU B . n B 1 43 GLY 43 233 233 GLY GLY B . n B 1 44 GLU 44 234 234 GLU GLU B . n B 1 45 ASN 45 235 235 ASN ASN B . n B 1 46 ASP 46 236 236 ASP ASP B . n B 1 47 PRO 47 237 237 PRO PRO B . n B 1 48 VAL 48 238 238 VAL VAL B . n B 1 49 LEU 49 239 239 LEU LEU B . n B 1 50 GLN 50 240 240 GLN GLN B . n B 1 51 ARG 51 241 241 ARG ARG B . n B 1 52 ILE 52 242 242 ILE ILE B . n B 1 53 VAL 53 243 243 VAL VAL B . n B 1 54 ASP 54 244 244 ASP ASP B . n B 1 55 ILE 55 245 245 ILE ILE B . n B 1 56 LEU 56 246 246 LEU LEU B . n B 1 57 TYR 57 247 247 TYR TYR B . n B 1 58 ALA 58 248 248 ALA ALA B . n B 1 59 THR 59 249 249 THR THR B . n B 1 60 ASP 60 250 250 ASP ASP B . n B 1 61 GLU 61 251 251 GLU GLU B . n B 1 62 GLY 62 252 252 GLY GLY B . n B 1 63 PHE 63 253 253 PHE PHE B . n B 1 64 VAL 64 254 254 VAL VAL B . n B 1 65 ILE 65 255 255 ILE ILE B . n B 1 66 PRO 66 256 256 PRO PRO B . n B 1 67 ASP 67 257 257 ASP ASP B . n B 1 68 GLU 68 258 258 GLU GLU B . n B 1 69 GLY 69 259 259 GLY GLY B . n B 1 70 GLY 70 260 260 GLY GLY B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C05 1 301 1 C05 SMF A . D 2 C05 1 301 1 C05 SMF B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3370 ? 1 MORE -35 ? 1 'SSA (A^2)' 9540 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-02-07 2 'Structure model' 1 1 2019-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category pdbx_nmr_software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_pdbx_nmr_software.name' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 EB1 1 ? mM '[U-13C; U-15N]' 1 '2-(1-cyclopentyltetrazol-5-yl)sulfanyl-N-(2-furylmethyl)propanamide' 5 ? mM 'natural abundance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 OD2 A ASP 250 ? ? HZ2 B LYS 220 ? ? 1.60 2 9 O A ILE 224 ? ? HG A CYS 228 ? ? 1.57 3 9 O B ILE 224 ? ? HG B CYS 228 ? ? 1.57 4 10 OD2 A ASP 250 ? ? HZ3 B LYS 220 ? ? 1.58 5 17 HZ1 A LYS 220 ? ? OD2 B ASP 250 ? ? 1.55 6 17 OD2 A ASP 250 ? ? HZ1 B LYS 220 ? ? 1.57 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 235 ? ? -134.41 -62.08 2 1 ASN B 235 ? ? -135.13 -62.27 3 2 ASN A 235 ? ? -133.77 -61.20 4 2 GLU A 251 ? ? -126.63 -67.73 5 2 ASN B 235 ? ? -134.64 -61.53 6 2 GLU B 251 ? ? -127.14 -67.29 7 3 ASN A 235 ? ? -136.19 -63.65 8 3 ASN B 235 ? ? -136.43 -64.50 9 4 GLU A 234 ? ? -121.87 -53.06 10 4 ASN A 235 ? ? -126.54 -66.39 11 4 GLU A 251 ? ? -147.06 -44.97 12 4 GLU A 258 ? ? -69.91 99.81 13 4 GLU B 234 ? ? -122.22 -53.99 14 4 ASN B 235 ? ? -125.49 -67.58 15 4 GLU B 251 ? ? -146.48 -44.75 16 4 GLU B 258 ? ? -69.78 99.57 17 5 GLU A 234 ? ? -121.18 -54.98 18 5 ASN A 235 ? ? -135.98 -54.07 19 5 GLU B 234 ? ? -121.32 -55.26 20 5 ASN B 235 ? ? -137.10 -53.28 21 6 ASN A 235 ? ? -132.74 -61.28 22 6 ASN B 235 ? ? -132.92 -61.45 23 7 GLU A 234 ? ? -120.31 -51.69 24 7 ASN A 235 ? ? -132.66 -61.50 25 7 GLU B 234 ? ? -120.49 -51.65 26 7 ASN B 235 ? ? -133.15 -61.81 27 8 ASN A 235 ? ? -133.97 -60.98 28 8 ASP A 257 ? ? -109.50 46.24 29 8 ASN B 235 ? ? -134.31 -61.19 30 8 ASP B 257 ? ? -109.65 46.39 31 9 ASN A 235 ? ? -133.83 -62.95 32 9 GLU A 251 ? ? 57.36 -173.10 33 9 ASN B 235 ? ? -134.66 -62.77 34 9 GLU B 251 ? ? 58.59 -173.10 35 10 ASN A 235 ? ? -141.25 -62.63 36 10 ASP A 250 ? ? -66.54 96.47 37 10 GLU A 251 ? ? -159.23 -52.60 38 10 GLU B 234 ? ? -93.07 -60.53 39 10 ASN B 235 ? ? -142.75 -62.69 40 10 ASP B 250 ? ? -66.25 96.60 41 10 GLU B 251 ? ? -159.60 -52.49 42 11 GLU A 234 ? ? -120.56 -52.08 43 11 ASN A 235 ? ? -133.32 -60.46 44 11 GLU B 234 ? ? -120.71 -51.92 45 11 ASN B 235 ? ? -134.04 -60.41 46 12 ASN A 235 ? ? -131.60 -62.57 47 12 ASN B 235 ? ? -131.83 -63.40 48 13 ASN A 235 ? ? -134.90 -62.83 49 13 ASN B 235 ? ? -135.15 -63.35 50 14 GLU A 234 ? ? -121.18 -50.62 51 14 ASN A 235 ? ? -132.01 -63.31 52 14 GLU B 234 ? ? -121.67 -50.18 53 14 ASN B 235 ? ? -132.44 -63.89 54 15 ASN A 235 ? ? -132.78 -64.22 55 15 ASN B 235 ? ? -132.71 -65.06 56 16 GLU A 234 ? ? -121.29 -51.82 57 16 ASN A 235 ? ? -133.14 -63.97 58 16 GLU B 234 ? ? -121.67 -51.83 59 16 ASN B 235 ? ? -133.61 -64.48 60 17 ASN A 235 ? ? -133.64 -63.71 61 17 GLU A 258 ? ? -68.75 98.34 62 17 ASN B 235 ? ? -133.85 -64.72 63 17 GLU B 258 ? ? -68.77 97.88 64 18 GLU A 234 ? ? -121.25 -51.71 65 18 ASN A 235 ? ? -132.97 -58.96 66 18 GLU B 234 ? ? -121.57 -51.58 67 18 ASN B 235 ? ? -133.71 -58.53 68 19 ASN A 235 ? ? -132.66 -63.52 69 19 ASN B 235 ? ? -132.29 -63.93 70 20 ASN A 235 ? ? -136.49 -60.25 71 20 ASN B 235 ? ? -137.76 -59.53 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '(2~{R})-2-[(1-cyclopentyl-1,2,3,4-tetrazol-5-yl)sulfanyl]-~{N}-(furan-2-ylmethyl)propanamide' _pdbx_entity_nonpoly.comp_id C05 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #