HEADER CELL INVASION 05-NOV-17 6EWM TITLE CRYSTAL STRUCTURE OF HEME FREE PORPHYROMONAS GINGIVALIS HEME-BINDING TITLE 2 PROTEIN HMUY COMPND MOL_ID: 1; COMPND 2 MOLECULE: HAEMOPHORE HMUY; COMPND 3 CHAIN: A, F; COMPND 4 SYNONYM: HMUY,HMUY PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS; SOURCE 3 ORGANISM_TAXID: 837; SOURCE 4 GENE: HMUY', HMUY, AT291_03715, PGIN_13-1_01941, PGIN_YH522_00859; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PHMUY11 KEYWDS HEME-BINDING PROTEIN, CELL INVASION EXPDTA X-RAY DIFFRACTION AUTHOR S.V.ANTONYUK,R.W.STRANGE,M.BIELECKI,T.OLCZAK,M.OLCZAK REVDAT 3 17-JAN-24 6EWM 1 REMARK REVDAT 2 07-NOV-18 6EWM 1 JRNL REVDAT 1 24-OCT-18 6EWM 0 JRNL AUTH M.BIELECKI,S.ANTONYUK,R.W.STRANGE,J.W.SMALLEY,P.MACKIEWICZ, JRNL AUTH 2 M.SMIGA,P.STEPIEN,M.OLCZAK,T.OLCZAK JRNL TITL TANNERELLA FORSYTHIATFO BELONGS TOPORPHYROMONAS JRNL TITL 2 GINGIVALISHMUY-LIKE FAMILY OF PROTEINS BUT DIFFERS IN JRNL TITL 3 HEME-BINDING PROPERTIES. JRNL REF BIOSCI. REP. V. 38 2018 JRNL REFN ISSN 1573-4935 JRNL PMID 30266745 JRNL DOI 10.1042/BSR20181325 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 82229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.133 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4266 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4741 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.1770 REMARK 3 BIN FREE R VALUE SET COUNT : 257 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2868 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 731 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.053 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.053 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.874 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3085 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2815 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4178 ; 1.558 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6523 ; 0.912 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 388 ; 6.879 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;31.426 ;24.825 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 512 ;11.141 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;15.419 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 443 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3504 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 714 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1498 ; 1.293 ; 1.027 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1497 ; 1.279 ; 1.026 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1880 ; 1.612 ; 1.552 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1881 ; 1.615 ; 1.552 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1587 ; 2.057 ; 1.333 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1587 ; 2.056 ; 1.333 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2291 ; 2.437 ; 1.892 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4138 ; 4.691 ;12.217 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3674 ; 3.355 ;10.168 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5900 ; 1.625 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 199 ;35.328 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6379 ; 9.529 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6EWM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200007256. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97624 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86584 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 90.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.01400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3H8T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M AMMONIUM SULPHATE, 100 MM MES PH REMARK 280 5.0, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.47350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 26 REMARK 465 GLU A 27 REMARK 465 PRO A 28 REMARK 465 ASN A 29 REMARK 465 GLN A 30 REMARK 465 PRO A 31 REMARK 465 SER A 32 REMARK 465 THR A 33 REMARK 465 ASP F 26 REMARK 465 GLU F 27 REMARK 465 PRO F 28 REMARK 465 ASN F 29 REMARK 465 GLN F 30 REMARK 465 PRO F 31 REMARK 465 SER F 32 REMARK 465 THR F 33 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 34 CG CD REMARK 470 PRO F 34 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O3 GOL F 306 O HOH F 669 2555 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 34 N - CA - CB ANGL. DEV. = 9.8 DEGREES REMARK 500 PRO F 34 N - CA - CB ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 79 -123.42 51.54 REMARK 500 ARG F 79 -122.11 51.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 757 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 758 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 759 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 760 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A 761 DISTANCE = 7.32 ANGSTROMS REMARK 525 HOH A 762 DISTANCE = 7.61 ANGSTROMS REMARK 525 HOH A 763 DISTANCE = 8.05 ANGSTROMS REMARK 525 HOH A 764 DISTANCE = 8.12 ANGSTROMS REMARK 525 HOH A 765 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH A 766 DISTANCE = 8.80 ANGSTROMS REMARK 525 HOH A 767 DISTANCE = 9.17 ANGSTROMS REMARK 525 HOH A 768 DISTANCE = 9.34 ANGSTROMS REMARK 525 HOH A 769 DISTANCE = 9.63 ANGSTROMS REMARK 525 HOH A 770 DISTANCE = 9.78 ANGSTROMS REMARK 525 HOH A 771 DISTANCE = 9.79 ANGSTROMS REMARK 525 HOH A 772 DISTANCE = 10.36 ANGSTROMS REMARK 525 HOH A 773 DISTANCE = 11.57 ANGSTROMS REMARK 525 HOH F 735 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH F 736 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH F 737 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH F 738 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH F 739 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH F 740 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH F 741 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH F 742 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH F 743 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH F 744 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH F 745 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH F 746 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH F 747 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH F 748 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH F 749 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH F 750 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH F 751 DISTANCE = 7.34 ANGSTROMS REMARK 525 HOH F 752 DISTANCE = 8.85 ANGSTROMS REMARK 525 HOH F 753 DISTANCE = 9.06 ANGSTROMS REMARK 525 HOH F 754 DISTANCE = 9.18 ANGSTROMS REMARK 525 HOH F 755 DISTANCE = 9.68 ANGSTROMS REMARK 525 HOH F 756 DISTANCE = 10.02 ANGSTROMS REMARK 525 HOH F 757 DISTANCE = 10.75 ANGSTROMS REMARK 525 HOH F 758 DISTANCE = 11.98 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 F 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 F 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 F 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL F 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL F 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL F 306 DBREF 6EWM A 26 216 UNP A2I2W2 A2I2W2_PORGN 26 216 DBREF 6EWM F 26 216 UNP A2I2W2 A2I2W2_PORGN 26 216 SEQRES 1 A 191 ASP GLU PRO ASN GLN PRO SER THR PRO GLU ALA VAL THR SEQRES 2 A 191 LYS THR VAL THR ILE ASP ALA SER LYS TYR GLU THR TRP SEQRES 3 A 191 GLN TYR PHE SER PHE SER LYS GLY GLU VAL VAL ASN VAL SEQRES 4 A 191 THR ASP TYR LYS ASN ASP LEU ASN TRP ASP MET ALA LEU SEQRES 5 A 191 HIS ARG TYR ASP VAL ARG LEU ASN CYS GLY GLU SER GLY SEQRES 6 A 191 LYS GLY LYS GLY GLY ALA VAL PHE SER GLY LYS THR GLU SEQRES 7 A 191 MET ASP GLN ALA THR THR VAL PRO THR ASP GLY TYR THR SEQRES 8 A 191 VAL ASP VAL LEU GLY ARG ILE THR VAL LYS TYR GLU MET SEQRES 9 A 191 GLY PRO ASP GLY HIS GLN MET GLU TYR GLU GLU GLN GLY SEQRES 10 A 191 PHE SER GLU VAL ILE THR GLY LYS LYS ASN ALA GLN GLY SEQRES 11 A 191 PHE ALA SER GLY GLY TRP LEU GLU PHE SER HIS GLY PRO SEQRES 12 A 191 ALA GLY PRO THR TYR LYS LEU SER LYS ARG VAL PHE PHE SEQRES 13 A 191 VAL ARG GLY ALA ASP GLY ASN ILE ALA LYS VAL GLN PHE SEQRES 14 A 191 THR ASP TYR GLN ASP ALA GLU LEU LYS LYS GLY VAL ILE SEQRES 15 A 191 THR PHE THR TYR THR TYR PRO VAL LYS SEQRES 1 F 191 ASP GLU PRO ASN GLN PRO SER THR PRO GLU ALA VAL THR SEQRES 2 F 191 LYS THR VAL THR ILE ASP ALA SER LYS TYR GLU THR TRP SEQRES 3 F 191 GLN TYR PHE SER PHE SER LYS GLY GLU VAL VAL ASN VAL SEQRES 4 F 191 THR ASP TYR LYS ASN ASP LEU ASN TRP ASP MET ALA LEU SEQRES 5 F 191 HIS ARG TYR ASP VAL ARG LEU ASN CYS GLY GLU SER GLY SEQRES 6 F 191 LYS GLY LYS GLY GLY ALA VAL PHE SER GLY LYS THR GLU SEQRES 7 F 191 MET ASP GLN ALA THR THR VAL PRO THR ASP GLY TYR THR SEQRES 8 F 191 VAL ASP VAL LEU GLY ARG ILE THR VAL LYS TYR GLU MET SEQRES 9 F 191 GLY PRO ASP GLY HIS GLN MET GLU TYR GLU GLU GLN GLY SEQRES 10 F 191 PHE SER GLU VAL ILE THR GLY LYS LYS ASN ALA GLN GLY SEQRES 11 F 191 PHE ALA SER GLY GLY TRP LEU GLU PHE SER HIS GLY PRO SEQRES 12 F 191 ALA GLY PRO THR TYR LYS LEU SER LYS ARG VAL PHE PHE SEQRES 13 F 191 VAL ARG GLY ALA ASP GLY ASN ILE ALA LYS VAL GLN PHE SEQRES 14 F 191 THR ASP TYR GLN ASP ALA GLU LEU LYS LYS GLY VAL ILE SEQRES 15 F 191 THR PHE THR TYR THR TYR PRO VAL LYS HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET MES A 304 12 HET GOL A 305 6 HET GOL A 306 6 HET SO4 F 301 5 HET SO4 F 302 5 HET SO4 F 303 5 HET GOL F 304 6 HET GOL F 305 6 HET GOL F 306 6 HETNAM SO4 SULFATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 6(O4 S 2-) FORMUL 6 MES C6 H13 N O4 S FORMUL 7 GOL 5(C3 H8 O3) FORMUL 15 HOH *731(H2 O) HELIX 1 AA1 ASP A 66 ASP A 70 5 5 HELIX 2 AA2 CYS A 86 GLY A 90 5 5 HELIX 3 AA3 GLU A 103 ALA A 107 5 5 HELIX 4 AA4 SER A 144 GLY A 149 1 6 HELIX 5 AA5 ASP F 66 ASP F 70 5 5 HELIX 6 AA6 CYS F 86 GLY F 90 5 5 HELIX 7 AA7 GLU F 103 ALA F 107 5 5 HELIX 8 AA8 SER F 144 GLY F 149 1 6 SHEET 1 AA1 5 VAL A 37 ASP A 44 0 SHEET 2 AA1 5 LYS A 204 VAL A 215 -1 O PHE A 209 N VAL A 41 SHEET 3 AA1 5 ILE A 189 GLN A 198 -1 N LYS A 191 O THR A 212 SHEET 4 AA1 5 PHE A 180 ARG A 183 -1 N VAL A 182 O ALA A 190 SHEET 5 AA1 5 GLY A 95 PHE A 98 -1 N GLY A 95 O ARG A 183 SHEET 1 AA2 4 GLU A 60 VAL A 62 0 SHEET 2 AA2 4 GLN A 52 SER A 55 -1 N SER A 55 O GLU A 60 SHEET 3 AA2 4 MET A 75 HIS A 78 -1 O LEU A 77 N GLN A 52 SHEET 4 AA2 4 ASP A 81 LEU A 84 -1 O ASP A 81 N HIS A 78 SHEET 1 AA3 4 VAL A 119 GLY A 130 0 SHEET 2 AA3 4 GLY A 133 PHE A 143 -1 O GLY A 133 N GLY A 130 SHEET 3 AA3 4 GLY F 133 PHE F 143 -1 O MET F 136 N HIS A 134 SHEET 4 AA3 4 VAL F 119 GLY F 130 -1 N ILE F 123 O GLU F 139 SHEET 1 AA4 2 LYS A 150 LYS A 151 0 SHEET 2 AA4 2 ALA A 157 SER A 158 -1 O SER A 158 N LYS A 150 SHEET 1 AA5 2 LEU A 162 SER A 165 0 SHEET 2 AA5 2 THR A 172 LEU A 175 -1 O THR A 172 N SER A 165 SHEET 1 AA6 5 VAL F 37 ASP F 44 0 SHEET 2 AA6 5 LYS F 204 VAL F 215 -1 O PHE F 209 N VAL F 41 SHEET 3 AA6 5 ILE F 189 GLN F 198 -1 N LYS F 191 O THR F 212 SHEET 4 AA6 5 PHE F 180 ARG F 183 -1 N VAL F 182 O ALA F 190 SHEET 5 AA6 5 GLY F 95 PHE F 98 -1 N VAL F 97 O PHE F 181 SHEET 1 AA7 4 GLU F 60 VAL F 62 0 SHEET 2 AA7 4 GLN F 52 SER F 55 -1 N SER F 55 O GLU F 60 SHEET 3 AA7 4 MET F 75 HIS F 78 -1 O MET F 75 N PHE F 54 SHEET 4 AA7 4 ASP F 81 LEU F 84 -1 O ASP F 81 N HIS F 78 SHEET 1 AA8 2 LYS F 150 LYS F 151 0 SHEET 2 AA8 2 ALA F 157 SER F 158 -1 O SER F 158 N LYS F 150 SHEET 1 AA9 2 LEU F 162 SER F 165 0 SHEET 2 AA9 2 THR F 172 LEU F 175 -1 O LYS F 174 N GLU F 163 CISPEP 1 TYR A 213 PRO A 214 0 -12.68 CISPEP 2 TYR F 213 PRO F 214 0 -12.21 SITE 1 AC1 7 ASP A 113 GLY A 114 TYR A 115 ARG A 183 SITE 2 AC1 7 HOH A 435 HOH A 462 HOH A 500 SITE 1 AC2 6 PHE A 98 ARG A 178 HOH A 478 HOH A 528 SITE 2 AC2 6 HOH A 565 HOH A 580 SITE 1 AC3 3 GLY A 87 HOH A 436 HOH A 437 SITE 1 AC4 11 TYR A 48 ARG A 79 PHE A 156 PHE A 164 SITE 2 AC4 11 TYR A 173 HOH A 421 HOH A 494 HOH A 613 SITE 3 AC4 11 ASN F 152 GLN F 154 PHE F 156 SITE 1 AC5 8 TYR A 127 MET A 129 GLY A 130 GLY A 133 SITE 2 AC5 8 HIS A 134 ARG F 122 TYR F 138 HOH F 621 SITE 1 AC6 7 LYS A 101 GLN A 106 THR A 108 THR A 109 SITE 2 AC6 7 HOH A 403 HOH A 404 HOH A 468 SITE 1 AC7 7 ASP F 113 GLY F 114 TYR F 115 ARG F 183 SITE 2 AC7 7 HOH F 435 HOH F 453 HOH F 530 SITE 1 AC8 6 HOH A 434 HOH A 482 ASN F 152 ALA F 153 SITE 2 AC8 6 HOH F 512 HOH F 565 SITE 1 AC9 7 PHE F 98 ARG F 178 HOH F 408 HOH F 428 SITE 2 AC9 7 HOH F 451 HOH F 517 HOH F 555 SITE 1 AD1 8 LYS F 101 GLN F 106 THR F 108 THR F 109 SITE 2 AD1 8 HOH F 405 HOH F 407 HOH F 591 HOH F 614 SITE 1 AD2 5 SER F 165 HIS F 166 LYS F 174 HOH F 401 SITE 2 AD2 5 HOH F 421 SITE 1 AD3 3 ASP F 105 GLN F 106 HOH F 452 CRYST1 59.334 42.947 95.075 90.00 107.87 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016854 0.000000 0.005434 0.00000 SCALE2 0.000000 0.023285 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011051 0.00000