HEADER OXIDOREDUCTASE 07-NOV-17 6EX3 TITLE STAPHYLOCOCCUS AUREUS SUPEROXIDE DISMUTASE SODA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: SODA, BER48_001496, BN1321_260190, CEJ93_06715, SOURCE 5 ERS072738_01312, ERS072840_00871, ERS073583_00205, ERS074020_01135, SOURCE 6 HMPREF3211_01704; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUPEROXIDE DISMUTASE, CAMBIALISTIC, STAPHYLOCOCCUS AUREUS, KEYWDS 2 OXIDOREDUCTASE, METALLOENZYME EXPDTA X-RAY DIFFRACTION AUTHOR A.BARWINSKA-SENDRA,A.BASLE,K.WALDRON REVDAT 3 17-JAN-24 6EX3 1 LINK REVDAT 2 10-JUN-20 6EX3 1 JRNL REVDAT 1 21-NOV-18 6EX3 0 JRNL AUTH A.BARWINSKA-SENDRA,Y.M.GARCIA,K.SENDRA,A.BASLE, JRNL AUTH 2 E.S.MACKENZIE,E.TARRANT,P.CARD,L.C.TABARES,C.BICEP,S.UN, JRNL AUTH 3 T.E.KEHL-FIE,K.J.WALDRON JRNL TITL AN EVOLUTIONARY PATH TO ALTERED COFACTOR SPECIFICITY IN A JRNL TITL 2 METALLOENZYME JRNL REF NAT COMMUN 2020 JRNL REFN ESSN 2041-1723 JRNL DOI 10.1038/S41467-020-16478-0 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 32175 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1643 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2332 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6282 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.18000 REMARK 3 B22 (A**2) : 0.46000 REMARK 3 B33 (A**2) : 0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.38000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.446 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.268 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.241 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.076 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6457 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5683 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8784 ; 1.478 ; 1.922 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13250 ; 0.976 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 769 ; 6.413 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 340 ;40.492 ;25.529 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1045 ;14.846 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ; 9.748 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 929 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7217 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1303 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3097 ; 2.872 ; 4.320 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3096 ; 2.870 ; 4.319 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3859 ; 4.263 ; 6.470 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3860 ; 4.263 ; 6.470 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3360 ; 3.304 ; 4.522 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3361 ; 3.303 ; 4.523 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4926 ; 5.286 ; 6.648 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7494 ; 7.257 ;49.105 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7486 ; 7.252 ;49.099 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6EX3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200007050. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.969 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33834 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 47.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2RCV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MGCL2 100 MM TRIS PH 8.5 30% REMARK 280 (W/V) PEG 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.19050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 61 REMARK 465 SER A 62 REMARK 465 LYS A 199 REMARK 465 MET B 1 REMARK 465 LYS B 199 REMARK 465 MET C 1 REMARK 465 PRO C 64 REMARK 465 ALA C 65 REMARK 465 ASN C 66 REMARK 465 ILE C 67 REMARK 465 LYS C 199 REMARK 465 MET D 1 REMARK 465 VAL D 63 REMARK 465 PRO D 64 REMARK 465 ALA D 65 REMARK 465 ASN D 66 REMARK 465 ILE D 67 REMARK 465 GLN D 68 REMARK 465 LYS D 199 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 30 -62.28 -99.99 REMARK 500 VAL A 43 58.12 -109.62 REMARK 500 ASN A 59 57.50 -119.97 REMARK 500 ARG A 123 109.77 -56.02 REMARK 500 ASN A 145 -122.80 60.26 REMARK 500 GLN A 172 -124.79 45.57 REMARK 500 ARG B 30 -66.75 -104.01 REMARK 500 ASN B 91 65.04 -116.23 REMARK 500 ARG B 123 97.66 -63.61 REMARK 500 ASN B 145 -121.45 65.03 REMARK 500 GLN B 172 -127.16 44.84 REMARK 500 PRO C 17 37.06 -96.07 REMARK 500 ARG C 30 -61.65 -107.55 REMARK 500 ASP C 47 -19.53 -49.94 REMARK 500 ARG C 123 103.76 -59.02 REMARK 500 ASN C 145 -126.35 51.60 REMARK 500 GLN C 172 -124.18 44.28 REMARK 500 ASN D 59 55.22 -119.60 REMARK 500 ASN D 145 -130.73 55.16 REMARK 500 TYR D 167 -2.98 -145.78 REMARK 500 GLN D 172 -125.33 42.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 27 NE2 REMARK 620 2 HIS A 81 NE2 90.4 REMARK 620 3 ASP A 161 OD2 77.7 114.0 REMARK 620 4 HIS A 165 NE2 89.1 133.8 111.0 REMARK 620 5 HOH A 307 O 162.6 96.6 84.9 97.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 27 NE2 REMARK 620 2 HIS B 81 NE2 94.8 REMARK 620 3 ASP B 161 OD2 83.8 112.8 REMARK 620 4 HIS B 165 NE2 87.8 137.4 109.8 REMARK 620 5 HOH B 322 O 172.3 90.5 89.0 92.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE C 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 27 NE2 REMARK 620 2 HIS C 81 NE2 85.6 REMARK 620 3 ASP C 161 OD2 84.5 102.9 REMARK 620 4 HIS C 165 NE2 95.8 133.1 123.9 REMARK 620 5 HOH C 315 O 170.7 88.6 89.7 93.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE D 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 27 NE2 REMARK 620 2 HIS D 81 NE2 93.3 REMARK 620 3 ASP D 161 OD2 85.8 117.4 REMARK 620 4 HIS D 165 NE2 93.3 138.7 103.7 REMARK 620 5 HOH D 316 O 172.4 91.8 86.9 86.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE D 201 DBREF 6EX3 A 1 199 UNP W8TT57 W8TT57_STAAU 1 199 DBREF 6EX3 B 1 199 UNP W8TT57 W8TT57_STAAU 1 199 DBREF 6EX3 C 1 199 UNP W8TT57 W8TT57_STAAU 1 199 DBREF 6EX3 D 1 199 UNP W8TT57 W8TT57_STAAU 1 199 SEQRES 1 A 199 MET ALA PHE GLU LEU PRO LYS LEU PRO TYR ALA PHE ASP SEQRES 2 A 199 ALA LEU GLU PRO HIS PHE ASP LYS GLU THR MET GLU ILE SEQRES 3 A 199 HIS HIS ASP ARG HIS HIS ASN THR TYR VAL THR LYS LEU SEQRES 4 A 199 ASN ALA ALA VAL GLU GLY THR ASP LEU GLU SER LYS SER SEQRES 5 A 199 ILE GLU GLU ILE VAL ALA ASN LEU ASP SER VAL PRO ALA SEQRES 6 A 199 ASN ILE GLN THR ALA VAL ARG ASN ASN GLY GLY GLY HIS SEQRES 7 A 199 LEU ASN HIS SER LEU PHE TRP GLU LEU LEU SER PRO ASN SEQRES 8 A 199 SER GLU GLU LYS GLY THR VAL VAL GLU LYS ILE LYS GLU SEQRES 9 A 199 GLN TRP GLY SER LEU GLU GLU PHE LYS LYS GLU PHE ALA SEQRES 10 A 199 ASP LYS ALA ALA ALA ARG PHE GLY SER GLY TRP ALA TRP SEQRES 11 A 199 LEU VAL VAL ASN ASN GLY GLN LEU GLU ILE VAL THR THR SEQRES 12 A 199 PRO ASN GLN ASP ASN PRO LEU THR GLU GLY LYS THR PRO SEQRES 13 A 199 ILE LEU GLY LEU ASP VAL TRP GLU HIS ALA TYR TYR LEU SEQRES 14 A 199 LYS TYR GLN ASN LYS ARG PRO ASP TYR ILE GLY ALA PHE SEQRES 15 A 199 TRP ASN VAL VAL ASN TRP GLU LYS VAL ASP GLU LEU TYR SEQRES 16 A 199 ASN ALA THR LYS SEQRES 1 B 199 MET ALA PHE GLU LEU PRO LYS LEU PRO TYR ALA PHE ASP SEQRES 2 B 199 ALA LEU GLU PRO HIS PHE ASP LYS GLU THR MET GLU ILE SEQRES 3 B 199 HIS HIS ASP ARG HIS HIS ASN THR TYR VAL THR LYS LEU SEQRES 4 B 199 ASN ALA ALA VAL GLU GLY THR ASP LEU GLU SER LYS SER SEQRES 5 B 199 ILE GLU GLU ILE VAL ALA ASN LEU ASP SER VAL PRO ALA SEQRES 6 B 199 ASN ILE GLN THR ALA VAL ARG ASN ASN GLY GLY GLY HIS SEQRES 7 B 199 LEU ASN HIS SER LEU PHE TRP GLU LEU LEU SER PRO ASN SEQRES 8 B 199 SER GLU GLU LYS GLY THR VAL VAL GLU LYS ILE LYS GLU SEQRES 9 B 199 GLN TRP GLY SER LEU GLU GLU PHE LYS LYS GLU PHE ALA SEQRES 10 B 199 ASP LYS ALA ALA ALA ARG PHE GLY SER GLY TRP ALA TRP SEQRES 11 B 199 LEU VAL VAL ASN ASN GLY GLN LEU GLU ILE VAL THR THR SEQRES 12 B 199 PRO ASN GLN ASP ASN PRO LEU THR GLU GLY LYS THR PRO SEQRES 13 B 199 ILE LEU GLY LEU ASP VAL TRP GLU HIS ALA TYR TYR LEU SEQRES 14 B 199 LYS TYR GLN ASN LYS ARG PRO ASP TYR ILE GLY ALA PHE SEQRES 15 B 199 TRP ASN VAL VAL ASN TRP GLU LYS VAL ASP GLU LEU TYR SEQRES 16 B 199 ASN ALA THR LYS SEQRES 1 C 199 MET ALA PHE GLU LEU PRO LYS LEU PRO TYR ALA PHE ASP SEQRES 2 C 199 ALA LEU GLU PRO HIS PHE ASP LYS GLU THR MET GLU ILE SEQRES 3 C 199 HIS HIS ASP ARG HIS HIS ASN THR TYR VAL THR LYS LEU SEQRES 4 C 199 ASN ALA ALA VAL GLU GLY THR ASP LEU GLU SER LYS SER SEQRES 5 C 199 ILE GLU GLU ILE VAL ALA ASN LEU ASP SER VAL PRO ALA SEQRES 6 C 199 ASN ILE GLN THR ALA VAL ARG ASN ASN GLY GLY GLY HIS SEQRES 7 C 199 LEU ASN HIS SER LEU PHE TRP GLU LEU LEU SER PRO ASN SEQRES 8 C 199 SER GLU GLU LYS GLY THR VAL VAL GLU LYS ILE LYS GLU SEQRES 9 C 199 GLN TRP GLY SER LEU GLU GLU PHE LYS LYS GLU PHE ALA SEQRES 10 C 199 ASP LYS ALA ALA ALA ARG PHE GLY SER GLY TRP ALA TRP SEQRES 11 C 199 LEU VAL VAL ASN ASN GLY GLN LEU GLU ILE VAL THR THR SEQRES 12 C 199 PRO ASN GLN ASP ASN PRO LEU THR GLU GLY LYS THR PRO SEQRES 13 C 199 ILE LEU GLY LEU ASP VAL TRP GLU HIS ALA TYR TYR LEU SEQRES 14 C 199 LYS TYR GLN ASN LYS ARG PRO ASP TYR ILE GLY ALA PHE SEQRES 15 C 199 TRP ASN VAL VAL ASN TRP GLU LYS VAL ASP GLU LEU TYR SEQRES 16 C 199 ASN ALA THR LYS SEQRES 1 D 199 MET ALA PHE GLU LEU PRO LYS LEU PRO TYR ALA PHE ASP SEQRES 2 D 199 ALA LEU GLU PRO HIS PHE ASP LYS GLU THR MET GLU ILE SEQRES 3 D 199 HIS HIS ASP ARG HIS HIS ASN THR TYR VAL THR LYS LEU SEQRES 4 D 199 ASN ALA ALA VAL GLU GLY THR ASP LEU GLU SER LYS SER SEQRES 5 D 199 ILE GLU GLU ILE VAL ALA ASN LEU ASP SER VAL PRO ALA SEQRES 6 D 199 ASN ILE GLN THR ALA VAL ARG ASN ASN GLY GLY GLY HIS SEQRES 7 D 199 LEU ASN HIS SER LEU PHE TRP GLU LEU LEU SER PRO ASN SEQRES 8 D 199 SER GLU GLU LYS GLY THR VAL VAL GLU LYS ILE LYS GLU SEQRES 9 D 199 GLN TRP GLY SER LEU GLU GLU PHE LYS LYS GLU PHE ALA SEQRES 10 D 199 ASP LYS ALA ALA ALA ARG PHE GLY SER GLY TRP ALA TRP SEQRES 11 D 199 LEU VAL VAL ASN ASN GLY GLN LEU GLU ILE VAL THR THR SEQRES 12 D 199 PRO ASN GLN ASP ASN PRO LEU THR GLU GLY LYS THR PRO SEQRES 13 D 199 ILE LEU GLY LEU ASP VAL TRP GLU HIS ALA TYR TYR LEU SEQRES 14 D 199 LYS TYR GLN ASN LYS ARG PRO ASP TYR ILE GLY ALA PHE SEQRES 15 D 199 TRP ASN VAL VAL ASN TRP GLU LYS VAL ASP GLU LEU TYR SEQRES 16 D 199 ASN ALA THR LYS HET FE A 201 1 HET FE B 201 1 HET FE C 201 1 HET FE D 201 1 HETNAM FE FE (III) ION FORMUL 5 FE 4(FE 3+) FORMUL 9 HOH *126(H2 O) HELIX 1 AA1 ASP A 20 ARG A 30 1 11 HELIX 2 AA2 ARG A 30 VAL A 43 1 14 HELIX 3 AA3 THR A 46 LYS A 51 5 6 HELIX 4 AA4 SER A 52 ASN A 59 1 8 HELIX 5 AA5 PRO A 64 LEU A 87 1 24 HELIX 6 AA6 GLY A 96 GLY A 107 1 12 HELIX 7 AA7 SER A 108 ARG A 123 1 16 HELIX 8 AA8 ASN A 148 GLY A 153 5 6 HELIX 9 AA9 TRP A 163 ALA A 166 5 4 HELIX 10 AB1 TYR A 167 GLN A 172 1 6 HELIX 11 AB2 LYS A 174 ASN A 184 1 11 HELIX 12 AB3 ASN A 187 ALA A 197 1 11 HELIX 13 AB4 ASP B 20 ARG B 30 1 11 HELIX 14 AB5 ARG B 30 GLU B 44 1 15 HELIX 15 AB6 THR B 46 LYS B 51 5 6 HELIX 16 AB7 SER B 52 ASN B 59 1 8 HELIX 17 AB8 LEU B 60 VAL B 63 5 4 HELIX 18 AB9 PRO B 64 LEU B 87 1 24 HELIX 19 AC1 GLY B 96 GLY B 107 1 12 HELIX 20 AC2 SER B 108 ARG B 123 1 16 HELIX 21 AC3 ASN B 148 GLY B 153 5 6 HELIX 22 AC4 TRP B 163 ALA B 166 5 4 HELIX 23 AC5 TYR B 167 GLN B 172 1 6 HELIX 24 AC6 LYS B 174 ASN B 184 1 11 HELIX 25 AC7 ASN B 187 ALA B 197 1 11 HELIX 26 AC8 ALA C 11 GLU C 16 5 6 HELIX 27 AC9 ASP C 20 ARG C 30 1 11 HELIX 28 AD1 ARG C 30 GLU C 44 1 15 HELIX 29 AD2 SER C 52 ASN C 59 1 8 HELIX 30 AD3 THR C 69 LEU C 87 1 19 HELIX 31 AD4 GLY C 96 GLY C 107 1 12 HELIX 32 AD5 SER C 108 ARG C 123 1 16 HELIX 33 AD6 ASN C 148 GLY C 153 5 6 HELIX 34 AD7 TRP C 163 ALA C 166 5 4 HELIX 35 AD8 TYR C 167 GLN C 172 1 6 HELIX 36 AD9 LYS C 174 ASN C 184 1 11 HELIX 37 AE1 ASN C 187 ALA C 197 1 11 HELIX 38 AE2 ASP D 20 ARG D 30 1 11 HELIX 39 AE3 ARG D 30 GLU D 44 1 15 HELIX 40 AE4 THR D 46 LYS D 51 5 6 HELIX 41 AE5 SER D 52 ASN D 59 1 8 HELIX 42 AE6 ALA D 70 LEU D 87 1 18 HELIX 43 AE7 GLY D 96 GLY D 107 1 12 HELIX 44 AE8 SER D 108 ARG D 123 1 16 HELIX 45 AE9 ASN D 148 GLY D 153 5 6 HELIX 46 AF1 TRP D 163 ALA D 166 5 4 HELIX 47 AF2 TYR D 167 GLN D 172 1 6 HELIX 48 AF3 LYS D 174 ASN D 184 1 11 HELIX 49 AF4 ASN D 187 ALA D 197 1 11 SHEET 1 AA1 3 GLN A 137 PRO A 144 0 SHEET 2 AA1 3 GLY A 127 ASN A 134 -1 N TRP A 130 O VAL A 141 SHEET 3 AA1 3 THR A 155 ASP A 161 -1 O THR A 155 N VAL A 133 SHEET 1 AA2 3 GLN B 137 PRO B 144 0 SHEET 2 AA2 3 GLY B 127 ASN B 134 -1 N TRP B 130 O VAL B 141 SHEET 3 AA2 3 THR B 155 ASP B 161 -1 O LEU B 160 N ALA B 129 SHEET 1 AA3 3 GLN C 137 PRO C 144 0 SHEET 2 AA3 3 GLY C 127 ASN C 134 -1 N TRP C 130 O VAL C 141 SHEET 3 AA3 3 THR C 155 ASP C 161 -1 O ILE C 157 N LEU C 131 SHEET 1 AA4 3 GLN D 137 PRO D 144 0 SHEET 2 AA4 3 GLY D 127 ASN D 134 -1 N TRP D 130 O VAL D 141 SHEET 3 AA4 3 THR D 155 ASP D 161 -1 O ILE D 157 N LEU D 131 LINK NE2 HIS A 27 FE FE A 201 1555 1555 2.28 LINK NE2 HIS A 81 FE FE A 201 1555 1555 1.98 LINK OD2 ASP A 161 FE FE A 201 1555 1555 2.11 LINK NE2 HIS A 165 FE FE A 201 1555 1555 2.34 LINK FE FE A 201 O HOH A 307 1555 1555 2.13 LINK NE2 HIS B 27 FE FE B 201 1555 1555 2.12 LINK NE2 HIS B 81 FE FE B 201 1555 1555 2.00 LINK OD2 ASP B 161 FE FE B 201 1555 1555 2.05 LINK NE2 HIS B 165 FE FE B 201 1555 1555 2.35 LINK FE FE B 201 O HOH B 322 1555 1555 2.09 LINK NE2 HIS C 27 FE FE C 201 1555 1555 2.23 LINK NE2 HIS C 81 FE FE C 201 1555 1555 2.18 LINK OD2 ASP C 161 FE FE C 201 1555 1555 1.95 LINK NE2 HIS C 165 FE FE C 201 1555 1555 2.17 LINK FE FE C 201 O HOH C 315 1555 1555 2.18 LINK NE2 HIS D 27 FE FE D 201 1555 1555 2.14 LINK NE2 HIS D 81 FE FE D 201 1555 1555 2.08 LINK OD2 ASP D 161 FE FE D 201 1555 1555 2.05 LINK NE2 HIS D 165 FE FE D 201 1555 1555 2.17 LINK FE FE D 201 O HOH D 316 1555 1555 1.98 CISPEP 1 GLU A 16 PRO A 17 0 -5.16 CISPEP 2 GLU B 16 PRO B 17 0 -0.77 CISPEP 3 GLU C 16 PRO C 17 0 1.77 CISPEP 4 GLU D 16 PRO D 17 0 3.98 SITE 1 AC1 5 HIS A 27 HIS A 81 ASP A 161 HIS A 165 SITE 2 AC1 5 HOH A 307 SITE 1 AC2 5 HIS B 27 HIS B 81 ASP B 161 HIS B 165 SITE 2 AC2 5 HOH B 322 SITE 1 AC3 5 HIS C 27 HIS C 81 ASP C 161 HIS C 165 SITE 2 AC3 5 HOH C 315 SITE 1 AC4 5 HIS D 27 HIS D 81 ASP D 161 HIS D 165 SITE 2 AC4 5 HOH D 316 CRYST1 47.557 66.381 108.311 90.00 98.72 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021027 0.000000 0.003224 0.00000 SCALE2 0.000000 0.015065 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009341 0.00000