HEADER PROTEIN BINDING 07-NOV-17 6EXD TITLE CRYSTAL STRUCTURE OF DOTM CYTOPLASMIC DOMAIN (RESIDUES 153-380) SEMET TITLE 2 DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ICMP (DOTM); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA SOURCE 3 (STRAIN PHILADELPHIA 1 / ATCC 33152 / DSM 7513); SOURCE 4 ORGANISM_TAXID: 272624; SOURCE 5 GENE: ICMP, LPG0445; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: BLR KEYWDS MEMBRANE PROTEIN, SECRETION SYSTEM, TYPE 4 SECRETION SYSTEM, KEYWDS 2 LEGIONELLA PNEUMOPHILA, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.MEIR,G.WAKSMAN REVDAT 2 07-MAR-18 6EXD 1 JRNL REVDAT 1 14-FEB-18 6EXD 0 JRNL AUTH A.MEIR,D.CHETRIT,L.LIU,C.R.ROY,G.WAKSMAN JRNL TITL LEGIONELLA DOTM STRUCTURE REVEALS A ROLE IN EFFECTOR JRNL TITL 2 RECRUITING TO THE TYPE 4B SECRETION SYSTEM. JRNL REF NAT COMMUN V. 9 507 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29410427 JRNL DOI 10.1038/S41467-017-02578-X REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 27700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1469 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.14 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.19 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1935 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3496 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 131 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.81000 REMARK 3 B22 (A**2) : 0.81000 REMARK 3 B33 (A**2) : -2.64000 REMARK 3 B12 (A**2) : 0.41000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.220 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.548 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3594 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3504 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4856 ; 2.084 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8043 ; 1.158 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 434 ; 6.824 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;37.372 ;22.781 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 582 ;18.459 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;22.206 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 523 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3999 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 828 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1742 ; 2.720 ; 2.755 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1741 ; 2.718 ; 2.754 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2174 ; 4.361 ; 4.107 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2175 ; 4.361 ; 4.108 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1852 ; 4.114 ; 3.358 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1850 ; 4.107 ; 3.354 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2682 ; 6.406 ; 4.805 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4350 ; 8.500 ;22.682 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4319 ; 8.490 ;22.647 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6EXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200006900. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29190 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.25300 REMARK 200 FOR THE DATA SET : 9.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 12.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.13700 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: BUCCANEER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0 0.15 M NH4SO4 25 % REMARK 280 W/V PEG 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.26667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.13333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.20000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 11.06667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.33333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -118.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 11.06667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 146 REMARK 465 PRO A 147 REMARK 465 SER A 148 REMARK 465 GLY A 149 REMARK 465 GLY A 150 REMARK 465 GLY A 151 REMARK 465 ALA A 152 REMARK 465 ASP A 153 REMARK 465 VAL A 154 REMARK 465 ASN A 155 REMARK 465 LYS A 156 REMARK 465 GLY A 157 REMARK 465 ALA A 180 REMARK 465 LEU A 181 REMARK 465 LEU A 182 REMARK 465 ASP A 183 REMARK 465 ASN A 184 REMARK 465 PRO A 185 REMARK 465 VAL A 186 REMARK 465 PRO A 187 REMARK 465 GLY A 188 REMARK 465 GLY B 146 REMARK 465 PRO B 147 REMARK 465 SER B 148 REMARK 465 GLY B 149 REMARK 465 GLY B 150 REMARK 465 GLY B 151 REMARK 465 ALA B 152 REMARK 465 ASP B 153 REMARK 465 VAL B 154 REMARK 465 ASN B 155 REMARK 465 LYS B 156 REMARK 465 GLY B 157 REMARK 465 PRO B 187 REMARK 465 GLY B 188 REMARK 465 PRO B 380 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 449 O HOH B 454 1.98 REMARK 500 O HOH B 439 O HOH B 452 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 189 CZ ARG B 202 4674 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 202 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 237 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 MSE A 353 CG - SE - CE ANGL. DEV. = 25.5 DEGREES REMARK 500 ARG B 197 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP B 257 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 213 53.37 -164.74 REMARK 500 ASP A 298 -70.77 -83.92 REMARK 500 VAL A 301 63.48 39.59 REMARK 500 SER A 303 -37.10 -33.06 REMARK 500 PHE A 306 50.25 -140.28 REMARK 500 MSE A 353 76.90 -118.13 REMARK 500 GLU A 377 8.54 -60.95 REMARK 500 ASP B 183 50.84 -92.14 REMARK 500 ASN B 184 77.46 134.69 REMARK 500 ASP B 213 59.12 -157.32 REMARK 500 ASP B 236 79.14 -109.54 REMARK 500 ASP B 298 -60.66 -103.41 REMARK 500 VAL B 301 80.22 -151.40 REMARK 500 SER B 304 2.23 -65.48 REMARK 500 LEU B 378 133.73 -35.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 254 LYS A 255 149.86 REMARK 500 PRO B 256 ASP B 257 -142.84 REMARK 500 REMARK 500 REMARK: NULL DBREF 6EXD A 153 380 UNP Q5ZYC7 Q5ZYC7_LEGPH 153 380 DBREF 6EXD B 153 380 UNP Q5ZYC7 Q5ZYC7_LEGPH 153 380 SEQADV 6EXD GLY A 146 UNP Q5ZYC7 EXPRESSION TAG SEQADV 6EXD PRO A 147 UNP Q5ZYC7 EXPRESSION TAG SEQADV 6EXD SER A 148 UNP Q5ZYC7 EXPRESSION TAG SEQADV 6EXD GLY A 149 UNP Q5ZYC7 EXPRESSION TAG SEQADV 6EXD GLY A 150 UNP Q5ZYC7 EXPRESSION TAG SEQADV 6EXD GLY A 151 UNP Q5ZYC7 EXPRESSION TAG SEQADV 6EXD ALA A 152 UNP Q5ZYC7 EXPRESSION TAG SEQADV 6EXD GLY B 146 UNP Q5ZYC7 EXPRESSION TAG SEQADV 6EXD PRO B 147 UNP Q5ZYC7 EXPRESSION TAG SEQADV 6EXD SER B 148 UNP Q5ZYC7 EXPRESSION TAG SEQADV 6EXD GLY B 149 UNP Q5ZYC7 EXPRESSION TAG SEQADV 6EXD GLY B 150 UNP Q5ZYC7 EXPRESSION TAG SEQADV 6EXD GLY B 151 UNP Q5ZYC7 EXPRESSION TAG SEQADV 6EXD ALA B 152 UNP Q5ZYC7 EXPRESSION TAG SEQRES 1 A 235 GLY PRO SER GLY GLY GLY ALA ASP VAL ASN LYS GLY PRO SEQRES 2 A 235 TRP ALA MSE ALA LEU THR PRO MSE GLU PHE ALA ARG LYS SEQRES 3 A 235 TYR ASN LEU LEU ARG LYS ASP ASP ALA LEU LEU ASP ASN SEQRES 4 A 235 PRO VAL PRO GLY GLU GLU MSE THR ALA GLY ILE ARG ARG SEQRES 5 A 235 GLY ASP ALA LYS ARG VAL PHE THR MSE GLN LEU GLY PRO SEQRES 6 A 235 TYR TRP ASP GLY PHE GLU ARG CYS SER PRO GLN ALA TYR SEQRES 7 A 235 ALA LEU SER ALA VAL PHE MSE ALA ARG MSE ASN ARG ASP SEQRES 8 A 235 ARG ASP ALA ALA ASN ASN ILE LEU LYS VAL LEU ASP LYS SEQRES 9 A 235 THR PHE VAL ASP GLY LYS PRO ASP PHE SER VAL ALA ARG SEQRES 10 A 235 PRO VAL MSE LYS LYS TYR GLN ASN SER GLU LEU VAL GLN SEQRES 11 A 235 GLU VAL VAL ALA LYS HIS ALA TYR VAL LEU THR VAL ILE SEQRES 12 A 235 ALA SER LEU LEU GLU ALA ALA ARG GLU ASP GLY VAL VAL SEQRES 13 A 235 PRO SER SER GLU PHE LEU TRP LEU LYS PRO VAL ASP ARG SEQRES 14 A 235 ARG LEU TRP TYR MSE LEU ASN CYS VAL GLY ARG GLN THR SEQRES 15 A 235 PRO TYR SER GLU VAL ALA GLY PRO PHE ALA HIS TRP LYS SEQRES 16 A 235 ALA GLU LYS GLU MSE GLY ARG ARG SER LEU VAL PRO MSE SEQRES 17 A 235 ILE ASP GLU ALA ILE ARG ALA LEU GLU ILE ALA VAL LYS SEQRES 18 A 235 GLU VAL ARG LEU THR PRO ARG GLN MSE GLU GLU LEU GLU SEQRES 19 A 235 PRO SEQRES 1 B 235 GLY PRO SER GLY GLY GLY ALA ASP VAL ASN LYS GLY PRO SEQRES 2 B 235 TRP ALA MSE ALA LEU THR PRO MSE GLU PHE ALA ARG LYS SEQRES 3 B 235 TYR ASN LEU LEU ARG LYS ASP ASP ALA LEU LEU ASP ASN SEQRES 4 B 235 PRO VAL PRO GLY GLU GLU MSE THR ALA GLY ILE ARG ARG SEQRES 5 B 235 GLY ASP ALA LYS ARG VAL PHE THR MSE GLN LEU GLY PRO SEQRES 6 B 235 TYR TRP ASP GLY PHE GLU ARG CYS SER PRO GLN ALA TYR SEQRES 7 B 235 ALA LEU SER ALA VAL PHE MSE ALA ARG MSE ASN ARG ASP SEQRES 8 B 235 ARG ASP ALA ALA ASN ASN ILE LEU LYS VAL LEU ASP LYS SEQRES 9 B 235 THR PHE VAL ASP GLY LYS PRO ASP PHE SER VAL ALA ARG SEQRES 10 B 235 PRO VAL MSE LYS LYS TYR GLN ASN SER GLU LEU VAL GLN SEQRES 11 B 235 GLU VAL VAL ALA LYS HIS ALA TYR VAL LEU THR VAL ILE SEQRES 12 B 235 ALA SER LEU LEU GLU ALA ALA ARG GLU ASP GLY VAL VAL SEQRES 13 B 235 PRO SER SER GLU PHE LEU TRP LEU LYS PRO VAL ASP ARG SEQRES 14 B 235 ARG LEU TRP TYR MSE LEU ASN CYS VAL GLY ARG GLN THR SEQRES 15 B 235 PRO TYR SER GLU VAL ALA GLY PRO PHE ALA HIS TRP LYS SEQRES 16 B 235 ALA GLU LYS GLU MSE GLY ARG ARG SER LEU VAL PRO MSE SEQRES 17 B 235 ILE ASP GLU ALA ILE ARG ALA LEU GLU ILE ALA VAL LYS SEQRES 18 B 235 GLU VAL ARG LEU THR PRO ARG GLN MSE GLU GLU LEU GLU SEQRES 19 B 235 PRO MODRES 6EXD MSE A 161 MET MODIFIED RESIDUE MODRES 6EXD MSE A 166 MET MODIFIED RESIDUE MODRES 6EXD MSE A 191 MET MODIFIED RESIDUE MODRES 6EXD MSE A 206 MET MODIFIED RESIDUE MODRES 6EXD MSE A 230 MET MODIFIED RESIDUE MODRES 6EXD MSE A 233 MET MODIFIED RESIDUE MODRES 6EXD MSE A 265 MET MODIFIED RESIDUE MODRES 6EXD MSE A 319 MET MODIFIED RESIDUE MODRES 6EXD MSE A 345 MET MODIFIED RESIDUE MODRES 6EXD MSE A 353 MET MODIFIED RESIDUE MODRES 6EXD MSE A 375 MET MODIFIED RESIDUE MODRES 6EXD MSE B 161 MET MODIFIED RESIDUE MODRES 6EXD MSE B 166 MET MODIFIED RESIDUE MODRES 6EXD MSE B 191 MET MODIFIED RESIDUE MODRES 6EXD MSE B 206 MET MODIFIED RESIDUE MODRES 6EXD MSE B 230 MET MODIFIED RESIDUE MODRES 6EXD MSE B 233 MET MODIFIED RESIDUE MODRES 6EXD MSE B 265 MET MODIFIED RESIDUE MODRES 6EXD MSE B 319 MET MODIFIED RESIDUE MODRES 6EXD MSE B 345 MET MODIFIED RESIDUE MODRES 6EXD MSE B 353 MET MODIFIED RESIDUE MODRES 6EXD MSE B 375 MET MODIFIED RESIDUE HET MSE A 161 8 HET MSE A 166 8 HET MSE A 191 8 HET MSE A 206 8 HET MSE A 230 8 HET MSE A 233 8 HET MSE A 265 8 HET MSE A 319 8 HET MSE A 345 8 HET MSE A 353 8 HET MSE A 375 8 HET MSE B 161 8 HET MSE B 166 8 HET MSE B 191 8 HET MSE B 206 8 HET MSE B 230 8 HET MSE B 233 8 HET MSE B 265 8 HET MSE B 319 8 HET MSE B 345 8 HET MSE B 353 8 HET MSE B 375 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 22(C5 H11 N O2 SE) FORMUL 3 HOH *131(H2 O) HELIX 1 AA1 THR A 164 TYR A 172 1 9 HELIX 2 AA2 ARG A 196 GLY A 209 1 14 HELIX 3 AA3 GLY A 214 CYS A 218 5 5 HELIX 4 AA4 SER A 219 ASN A 234 1 16 HELIX 5 AA5 ASP A 236 GLY A 254 1 19 HELIX 6 AA6 ASP A 257 VAL A 260 5 4 HELIX 7 AA7 ALA A 261 GLN A 269 1 9 HELIX 8 AA8 SER A 271 HIS A 281 1 11 HELIX 9 AA9 TYR A 283 ARG A 296 1 14 HELIX 10 AB1 PRO A 302 LEU A 307 5 6 HELIX 11 AB2 TRP A 308 ASP A 313 1 6 HELIX 12 AB3 ASP A 313 CYS A 322 1 10 HELIX 13 AB4 TYR A 329 GLU A 331 5 3 HELIX 14 AB5 VAL A 332 GLY A 346 1 15 HELIX 15 AB6 ILE A 354 GLU A 367 1 14 HELIX 16 AB7 THR A 371 GLU A 377 1 7 HELIX 17 AB8 THR B 164 TYR B 172 1 9 HELIX 18 AB9 ASP B 178 ASP B 183 1 6 HELIX 19 AC1 ARG B 196 GLY B 209 1 14 HELIX 20 AC2 GLY B 214 CYS B 218 5 5 HELIX 21 AC3 SER B 219 ASN B 234 1 16 HELIX 22 AC4 ASP B 236 GLY B 254 1 19 HELIX 23 AC5 ASP B 257 VAL B 260 5 4 HELIX 24 AC6 ALA B 261 GLN B 269 1 9 HELIX 25 AC7 SER B 271 HIS B 281 1 11 HELIX 26 AC8 TYR B 283 ARG B 296 1 14 HELIX 27 AC9 PRO B 302 LEU B 307 5 6 HELIX 28 AD1 TRP B 308 ASP B 313 1 6 HELIX 29 AD2 ASP B 313 VAL B 323 1 11 HELIX 30 AD3 TYR B 329 GLU B 331 5 3 HELIX 31 AD4 VAL B 332 GLY B 346 1 15 HELIX 32 AD5 ILE B 354 LYS B 366 1 13 HELIX 33 AD6 THR B 371 LEU B 378 1 8 SHEET 1 AA1 2 LEU A 175 ARG A 176 0 SHEET 2 AA1 2 GLY A 194 ILE A 195 -1 O GLY A 194 N ARG A 176 SHEET 1 AA2 2 LEU B 175 ARG B 176 0 SHEET 2 AA2 2 GLY B 194 ILE B 195 -1 O GLY B 194 N ARG B 176 LINK C ALA A 160 N MSE A 161 1555 1555 1.32 LINK C MSE A 161 N ALA A 162 1555 1555 1.32 LINK C PRO A 165 N MSE A 166 1555 1555 1.33 LINK C MSE A 166 N GLU A 167 1555 1555 1.31 LINK C GLU A 190 N MSE A 191 1555 1555 1.33 LINK C MSE A 191 N THR A 192 1555 1555 1.31 LINK C THR A 205 N MSE A 206 1555 1555 1.32 LINK C MSE A 206 N GLN A 207 1555 1555 1.34 LINK C PHE A 229 N MSE A 230 1555 1555 1.32 LINK C MSE A 230 N ALA A 231 1555 1555 1.33 LINK C ARG A 232 N MSE A 233 1555 1555 1.33 LINK C MSE A 233 N ASN A 234 1555 1555 1.32 LINK C VAL A 264 N MSE A 265 1555 1555 1.33 LINK C MSE A 265 N LYS A 266 1555 1555 1.34 LINK C TYR A 318 N MSE A 319 1555 1555 1.35 LINK C MSE A 319 N LEU A 320 1555 1555 1.33 LINK C GLU A 344 N MSE A 345 1555 1555 1.33 LINK C MSE A 345 N GLY A 346 1555 1555 1.31 LINK C PRO A 352 N MSE A 353 1555 1555 1.31 LINK C MSE A 353 N ILE A 354 1555 1555 1.32 LINK C GLN A 374 N MSE A 375 1555 1555 1.33 LINK C MSE A 375 N GLU A 376 1555 1555 1.33 LINK C ALA B 160 N MSE B 161 1555 1555 1.31 LINK C MSE B 161 N ALA B 162 1555 1555 1.32 LINK C PRO B 165 N MSE B 166 1555 1555 1.33 LINK C MSE B 166 N GLU B 167 1555 1555 1.33 LINK C GLU B 190 N MSE B 191 1555 1555 1.33 LINK C MSE B 191 N THR B 192 1555 1555 1.32 LINK C THR B 205 N MSE B 206 1555 1555 1.33 LINK C MSE B 206 N GLN B 207 1555 1555 1.32 LINK C PHE B 229 N MSE B 230 1555 1555 1.33 LINK C MSE B 230 N ALA B 231 1555 1555 1.33 LINK C ARG B 232 N MSE B 233 1555 1555 1.34 LINK C MSE B 233 N ASN B 234 1555 1555 1.32 LINK C VAL B 264 N MSE B 265 1555 1555 1.32 LINK C MSE B 265 N LYS B 266 1555 1555 1.33 LINK C TYR B 318 N MSE B 319 1555 1555 1.33 LINK C MSE B 319 N LEU B 320 1555 1555 1.34 LINK C GLU B 344 N MSE B 345 1555 1555 1.34 LINK C MSE B 345 N GLY B 346 1555 1555 1.32 LINK C PRO B 352 N MSE B 353 1555 1555 1.32 LINK C MSE B 353 N ILE B 354 1555 1555 1.33 LINK C GLN B 374 N MSE B 375 1555 1555 1.34 LINK C MSE B 375 N GLU B 376 1555 1555 1.34 CRYST1 118.000 118.000 66.400 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008475 0.004893 0.000000 0.00000 SCALE2 0.000000 0.009786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015060 0.00000