HEADER SIGNALING PROTEIN 10-NOV-17 6EXW TITLE CRYSTAL STRUCTURE OF CIAP1-BIR3 IN COMPLEX WITH A COVALENTLY BOUND SM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: ZINC-FINGER PROTEIN; COMPND 5 SYNONYM: CELLULAR INHIBITOR OF APOPTOSIS 1,C-IAP1,IAP HOMOLOG B, COMPND 6 INHIBITOR OF APOPTOSIS PROTEIN 2,HIAP2,RING FINGER PROTEIN 48,RING- COMPND 7 TYPE E3 UBIQUITIN TRANSFERASE BIRC2,TNFR2-TRAF-SIGNALING COMPLEX COMPND 8 PROTEIN 2; COMPND 9 EC: 2.3.2.27; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BIRC2, API1, MIHB, RNF48; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS ZINC FINGER MOTIF, SMAC-MIMETIC, PROTEIN-LIGAND COMPLEX, BIR DOMAIN, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.CORTI,F.COSSU,M.MILANI,E.MASTRANGELO REVDAT 3 17-JAN-24 6EXW 1 REMARK LINK REVDAT 2 19-SEP-18 6EXW 1 JRNL REVDAT 1 08-AUG-18 6EXW 0 JRNL AUTH A.CORTI,M.MILANI,D.LECIS,P.SENECI,M.DE ROSA,E.MASTRANGELO, JRNL AUTH 2 F.COSSU JRNL TITL STRUCTURE-BASED DESIGN AND MOLECULAR PROFILING OF JRNL TITL 2 SMAC-MIMETICS SELECTIVE FOR CELLULAR IAPS. JRNL REF FEBS J. V. 285 3286 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 30055105 JRNL DOI 10.1111/FEBS.14616 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 14821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 779 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1095 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1594 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.07000 REMARK 3 B22 (A**2) : -1.07000 REMARK 3 B33 (A**2) : 3.48000 REMARK 3 B12 (A**2) : -0.54000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.212 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.198 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.141 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1738 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1549 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2346 ; 1.651 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3566 ; 0.866 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 226 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1967 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 457 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6EXW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200007428. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.939 REMARK 200 MONOCHROMATOR : CHANNEL CUT ESRF MONOCHROMATOR REMARK 200 OPTICS : VERTICALLY BENDED MULTILAYER REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15655 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 58.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3MUP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 3350, 0.22 M MGCL2, 0.1M REMARK 280 BISTRIS, PH 5.9, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.75133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.87567 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 58.87567 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 117.75133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 715 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 244 REMARK 465 GLU A 245 REMARK 465 ASN A 246 REMARK 465 SER A 247 REMARK 465 LEU A 248 REMARK 465 GLU A 249 REMARK 465 THR A 250 REMARK 465 LEU A 251 REMARK 465 ARG A 252 REMARK 465 PHE A 253 REMARK 465 GLN A 352 REMARK 465 LEU A 353 REMARK 465 LEU A 354 REMARK 465 SER A 355 REMARK 465 THR A 356 REMARK 465 SER A 357 REMARK 465 LEU A 358 REMARK 465 GLU A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 465 HIS A 363 REMARK 465 HIS A 364 REMARK 465 HIS A 365 REMARK 465 MET C 244 REMARK 465 GLU C 245 REMARK 465 ASN C 246 REMARK 465 SER C 247 REMARK 465 LEU C 248 REMARK 465 GLU C 249 REMARK 465 THR C 250 REMARK 465 LEU C 251 REMARK 465 ARG C 252 REMARK 465 LEU C 350 REMARK 465 GLU C 351 REMARK 465 GLN C 352 REMARK 465 LEU C 353 REMARK 465 LEU C 354 REMARK 465 SER C 355 REMARK 465 THR C 356 REMARK 465 SER C 357 REMARK 465 LEU C 358 REMARK 465 GLU C 359 REMARK 465 HIS C 360 REMARK 465 HIS C 361 REMARK 465 HIS C 362 REMARK 465 HIS C 363 REMARK 465 HIS C 364 REMARK 465 HIS C 365 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE C 253 CG CD1 CD2 CE1 CE2 CZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG C 332 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 349 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG C 332 CG - CD - NE ANGL. DEV. = -22.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 295 -128.68 53.91 REMARK 500 CYS A 302 -61.97 -93.85 REMARK 500 PHE C 270 31.81 -91.77 REMARK 500 PRO C 278 42.78 -83.03 REMARK 500 ASN C 295 -121.56 63.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 777 DISTANCE = 8.94 ANGSTROMS REMARK 525 HOH C 776 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH C 777 DISTANCE = 8.13 ANGSTROMS REMARK 525 HOH C 778 DISTANCE = 10.45 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 300 SG REMARK 620 2 CYS A 303 SG 110.5 REMARK 620 3 HIS A 320 NE2 101.3 116.3 REMARK 620 4 CYS A 327 SG 107.5 107.1 113.8 REMARK 620 5 HOH A 709 O 166.3 75.1 65.4 81.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 300 SG REMARK 620 2 CYS C 303 SG 111.0 REMARK 620 3 HIS C 320 NE2 113.0 97.3 REMARK 620 4 CYS C 327 SG 115.0 109.1 110.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C3K A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide C3K C 602 and CYS C REMARK 800 309 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MUP RELATED DB: PDB DBREF 6EXW A 245 357 UNP Q13490 BIRC2_HUMAN 251 363 DBREF 6EXW C 245 357 UNP Q13490 BIRC2_HUMAN 251 363 SEQADV 6EXW MET A 244 UNP Q13490 INITIATING METHIONINE SEQADV 6EXW LEU A 358 UNP Q13490 EXPRESSION TAG SEQADV 6EXW GLU A 359 UNP Q13490 EXPRESSION TAG SEQADV 6EXW HIS A 360 UNP Q13490 EXPRESSION TAG SEQADV 6EXW HIS A 361 UNP Q13490 EXPRESSION TAG SEQADV 6EXW HIS A 362 UNP Q13490 EXPRESSION TAG SEQADV 6EXW HIS A 363 UNP Q13490 EXPRESSION TAG SEQADV 6EXW HIS A 364 UNP Q13490 EXPRESSION TAG SEQADV 6EXW HIS A 365 UNP Q13490 EXPRESSION TAG SEQADV 6EXW MET C 244 UNP Q13490 INITIATING METHIONINE SEQADV 6EXW LEU C 358 UNP Q13490 EXPRESSION TAG SEQADV 6EXW GLU C 359 UNP Q13490 EXPRESSION TAG SEQADV 6EXW HIS C 360 UNP Q13490 EXPRESSION TAG SEQADV 6EXW HIS C 361 UNP Q13490 EXPRESSION TAG SEQADV 6EXW HIS C 362 UNP Q13490 EXPRESSION TAG SEQADV 6EXW HIS C 363 UNP Q13490 EXPRESSION TAG SEQADV 6EXW HIS C 364 UNP Q13490 EXPRESSION TAG SEQADV 6EXW HIS C 365 UNP Q13490 EXPRESSION TAG SEQRES 1 A 122 MET GLU ASN SER LEU GLU THR LEU ARG PHE SER ILE SER SEQRES 2 A 122 ASN LEU SER MET GLN THR HIS ALA ALA ARG MET ARG THR SEQRES 3 A 122 PHE MET TYR TRP PRO SER SER VAL PRO VAL GLN PRO GLU SEQRES 4 A 122 GLN LEU ALA SER ALA GLY PHE TYR TYR VAL GLY ARG ASN SEQRES 5 A 122 ASP ASP VAL LYS CYS PHE CYS CYS ASP GLY GLY LEU ARG SEQRES 6 A 122 CYS TRP GLU SER GLY ASP ASP PRO TRP VAL GLU HIS ALA SEQRES 7 A 122 LYS TRP PHE PRO ARG CYS GLU PHE LEU ILE ARG MET LYS SEQRES 8 A 122 GLY GLN GLU PHE VAL ASP GLU ILE GLN GLY ARG TYR PRO SEQRES 9 A 122 HIS LEU LEU GLU GLN LEU LEU SER THR SER LEU GLU HIS SEQRES 10 A 122 HIS HIS HIS HIS HIS SEQRES 1 C 122 MET GLU ASN SER LEU GLU THR LEU ARG PHE SER ILE SER SEQRES 2 C 122 ASN LEU SER MET GLN THR HIS ALA ALA ARG MET ARG THR SEQRES 3 C 122 PHE MET TYR TRP PRO SER SER VAL PRO VAL GLN PRO GLU SEQRES 4 C 122 GLN LEU ALA SER ALA GLY PHE TYR TYR VAL GLY ARG ASN SEQRES 5 C 122 ASP ASP VAL LYS CYS PHE CYS CYS ASP GLY GLY LEU ARG SEQRES 6 C 122 CYS TRP GLU SER GLY ASP ASP PRO TRP VAL GLU HIS ALA SEQRES 7 C 122 LYS TRP PHE PRO ARG CYS GLU PHE LEU ILE ARG MET LYS SEQRES 8 C 122 GLY GLN GLU PHE VAL ASP GLU ILE GLN GLY ARG TYR PRO SEQRES 9 C 122 HIS LEU LEU GLU GLN LEU LEU SER THR SER LEU GLU HIS SEQRES 10 C 122 HIS HIS HIS HIS HIS HET ZN A 601 1 HET C3K A 602 34 HET ZN C 601 1 HET C3K C 602 34 HETNAM ZN ZINC ION HETNAM C3K (3~{S},6~{S},7~{R},9~{A}~{S})-6-[[(2~{S})-2- HETNAM 2 C3K (METHYLAMINO)PROPANOYL]AMINO]-5-OXIDANYLIDENE-~{N}- HETNAM 3 C3K (PHENYLMETHYL)-7-[(PROPANOYLAMINO)METHYL]-3,6,7,8,9, HETNAM 4 C3K 9~{A}-HEXAHYDROPYRROLO[1,2-A]AZEPINE-3-CARBOXAMIDE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 C3K 2(C25 H35 N5 O4) FORMUL 7 HOH *155(H2 O) HELIX 1 AA1 ASN A 257 GLN A 261 5 5 HELIX 2 AA2 THR A 262 THR A 269 1 8 HELIX 3 AA3 GLN A 280 ALA A 287 1 8 HELIX 4 AA4 ASP A 315 PHE A 324 1 10 HELIX 5 AA5 CYS A 327 TYR A 346 1 20 HELIX 6 AA6 ASN C 257 GLN C 261 5 5 HELIX 7 AA7 THR C 262 PHE C 270 1 9 HELIX 8 AA8 GLN C 280 ALA C 287 1 8 HELIX 9 AA9 ASP C 315 PHE C 324 1 10 HELIX 10 AB1 CYS C 327 TYR C 346 1 20 SHEET 1 AA1 3 PHE A 289 TYR A 291 0 SHEET 2 AA1 3 VAL A 298 CYS A 300 -1 O LYS A 299 N TYR A 290 SHEET 3 AA1 3 GLY A 306 LEU A 307 -1 O LEU A 307 N VAL A 298 SHEET 1 AA2 3 PHE C 289 TYR C 291 0 SHEET 2 AA2 3 VAL C 298 CYS C 300 -1 O LYS C 299 N TYR C 290 SHEET 3 AA2 3 GLY C 306 LEU C 307 -1 O LEU C 307 N VAL C 298 LINK SG CYS A 309 CAA C3K A 602 1555 1555 1.84 LINK SG CYS C 309 CAA C3K C 602 1555 1555 1.84 LINK SG CYS A 300 ZN ZN A 601 1555 1555 2.33 LINK SG CYS A 303 ZN ZN A 601 1555 1555 2.31 LINK NE2 HIS A 320 ZN ZN A 601 1555 1555 2.15 LINK SG CYS A 327 ZN ZN A 601 1555 1555 2.33 LINK ZN ZN A 601 O HOH A 709 1555 1555 2.61 LINK SG CYS C 300 ZN ZN C 601 1555 1555 2.36 LINK SG CYS C 303 ZN ZN C 601 1555 1555 2.31 LINK NE2 HIS C 320 ZN ZN C 601 1555 1555 2.09 LINK SG CYS C 327 ZN ZN C 601 1555 1555 2.33 SITE 1 AC1 5 CYS A 300 CYS A 303 HIS A 320 CYS A 327 SITE 2 AC1 5 HOH A 709 SITE 1 AC2 13 ARG A 308 CYS A 309 HOH A 712 HOH A 717 SITE 2 AC2 13 GLY C 306 LEU C 307 ARG C 308 CYS C 309 SITE 3 AC2 13 GLU C 311 ASP C 314 GLU C 319 TRP C 323 SITE 4 AC2 13 HOH C 706 SITE 1 AC3 4 CYS C 300 CYS C 303 HIS C 320 CYS C 327 SITE 1 AC4 14 GLY A 306 LEU A 307 ARG A 308 CYS A 309 SITE 2 AC4 14 GLU A 311 ASP A 314 GLU A 319 TRP A 323 SITE 3 AC4 14 C3K A 602 HOH A 712 ASP C 296 ARG C 308 SITE 4 AC4 14 TRP C 310 HOH C 712 CRYST1 53.799 53.799 176.627 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018588 0.010732 0.000000 0.00000 SCALE2 0.000000 0.021463 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005662 0.00000