HEADER CELL ADHESION 13-NOV-17 6EYI TITLE E-SELECTIN LECTIN, EGF-LIKE AND TWO SCR DOMAINS COMPLEXED WITH TITLE 2 GLYCOMIMETIC LIGAND BW69669 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E-SELECTIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CD62 ANTIGEN-LIKE FAMILY MEMBER E,ENDOTHELIAL LEUKOCYTE COMPND 5 ADHESION MOLECULE 1,ELAM-1,LEUKOCYTE-ENDOTHELIAL CELL ADHESION COMPND 6 MOLECULE 2,LECAM2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SELE, ELAM1; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_ORGAN: OVARY; SOURCE 9 EXPRESSION_SYSTEM_CELL: CHO; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDNA3.1 KEYWDS CELL ADHESION, CELL-ADHESION MOLECULE, C-TYPE LECTIN, INFLAMMATION, KEYWDS 2 LEUKOCYTE, GLYCOMIMETIC, CATCH-BOND EXPDTA X-RAY DIFFRACTION AUTHOR R.P.JAKOB,P.ZIHLMANN,R.C.PRESTON,N.VARGA,B.ERNST,T.MAIER REVDAT 3 17-JAN-24 6EYI 1 HETSYN REVDAT 2 29-JUL-20 6EYI 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 21-NOV-18 6EYI 0 JRNL AUTH N.VARGA,P.ZIHLMANN,R.C.PRESTON,R.P.JAKOB,T.MAIER,B.ERNST JRNL TITL E-SELECTIN LECTIN WITH DIFFERENT GLYCOMIMETIC LIGANDS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 21493 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.580 REMARK 3 FREE R VALUE TEST SET COUNT : 985 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.14 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.31 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2645 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2573 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2529 REMARK 3 BIN R VALUE (WORKING SET) : 0.2569 REMARK 3 BIN FREE R VALUE : 0.2661 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.39 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 116 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2179 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 141 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -16.79330 REMARK 3 B22 (A**2) : -0.75060 REMARK 3 B33 (A**2) : 17.54390 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.05720 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.380 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.214 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.165 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.211 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.165 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2393 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3276 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1085 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 67 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 340 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2393 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 328 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2741 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.30 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.79 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|4 - A|31 } REMARK 3 ORIGIN FOR THE GROUP (A): -16.3571 -15.9011 37.3155 REMARK 3 T TENSOR REMARK 3 T11: -0.2239 T22: -0.1943 REMARK 3 T33: -0.1996 T12: -0.0901 REMARK 3 T13: 0.0397 T23: 0.0574 REMARK 3 L TENSOR REMARK 3 L11: 9.0118 L22: 10.6180 REMARK 3 L33: 7.9879 L12: 1.7812 REMARK 3 L13: -1.0752 L23: 0.1464 REMARK 3 S TENSOR REMARK 3 S11: 0.2143 S12: -0.3895 S13: 0.2796 REMARK 3 S21: 0.2668 S22: -0.0829 S23: -0.0789 REMARK 3 S31: -0.3658 S32: -0.2842 S33: -0.1314 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|32 - A|115 } REMARK 3 ORIGIN FOR THE GROUP (A): -17.0613 -29.5139 37.1267 REMARK 3 T TENSOR REMARK 3 T11: -0.1392 T22: -0.2796 REMARK 3 T33: -0.0357 T12: -0.1037 REMARK 3 T13: -0.0390 T23: 0.1497 REMARK 3 L TENSOR REMARK 3 L11: 6.7650 L22: 2.2120 REMARK 3 L33: 3.3005 L12: 1.5797 REMARK 3 L13: -1.7653 L23: -0.5111 REMARK 3 S TENSOR REMARK 3 S11: 0.1387 S12: -0.2918 S13: -1.0911 REMARK 3 S21: 0.3048 S22: -0.2681 S23: -0.4779 REMARK 3 S31: 0.4665 S32: -0.1093 S33: 0.1294 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|116 - A|167 } REMARK 3 ORIGIN FOR THE GROUP (A): -8.7196 -6.1423 7.8448 REMARK 3 T TENSOR REMARK 3 T11: 0.2771 T22: -0.1664 REMARK 3 T33: -0.2108 T12: -0.0465 REMARK 3 T13: 0.0145 T23: 0.0648 REMARK 3 L TENSOR REMARK 3 L11: 0.8208 L22: 2.0484 REMARK 3 L33: 9.2048 L12: 1.0783 REMARK 3 L13: -1.4172 L23: -5.7578 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: 0.1709 S13: 0.0135 REMARK 3 S21: -0.0755 S22: 0.1806 S23: 0.3447 REMARK 3 S31: -0.5528 S32: -0.0526 S33: -0.1861 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|168 - A|218 } REMARK 3 ORIGIN FOR THE GROUP (A): -9.1853 4.6162 -16.6594 REMARK 3 T TENSOR REMARK 3 T11: 0.1247 T22: -0.1335 REMARK 3 T33: -0.2753 T12: -0.0227 REMARK 3 T13: 0.0333 T23: 0.0561 REMARK 3 L TENSOR REMARK 3 L11: 1.4552 L22: 0.0000 REMARK 3 L33: 8.3554 L12: 0.1689 REMARK 3 L13: 0.3971 L23: 0.1229 REMARK 3 S TENSOR REMARK 3 S11: 0.1196 S12: 0.2963 S13: 0.0528 REMARK 3 S21: 0.4342 S22: 0.0148 S23: 0.2422 REMARK 3 S31: 0.1456 S32: -0.4078 S33: -0.1344 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|219 - A|280 } REMARK 3 ORIGIN FOR THE GROUP (A): -6.2947 17.9987 -51.6970 REMARK 3 T TENSOR REMARK 3 T11: 0.0910 T22: -0.2929 REMARK 3 T33: -0.3193 T12: 0.0219 REMARK 3 T13: 0.1314 T23: 0.0700 REMARK 3 L TENSOR REMARK 3 L11: 3.4608 L22: 9.1516 REMARK 3 L33: 7.7654 L12: 1.8764 REMARK 3 L13: 3.7545 L23: -1.8074 REMARK 3 S TENSOR REMARK 3 S11: -0.3858 S12: 0.1393 S13: 0.2960 REMARK 3 S21: -1.0701 S22: 0.5710 S23: -0.2921 REMARK 3 S31: -1.0993 S32: -0.0154 S33: -0.1852 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EYI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200007437. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21493 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 57.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.84900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4C16 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CACL2, 0.1 M MOPS PH 6.2, 11-14% REMARK 280 PEG8000, AFTER MICROSEEDING, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.79500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.47000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.79500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.47000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 405 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 29 106.62 33.85 REMARK 500 TYR A 48 -159.00 67.54 REMARK 500 LYS A 86 160.18 63.61 REMARK 500 ASN A 139 -129.63 -160.85 REMARK 500 HIS A 167 22.86 86.76 REMARK 500 ASN A 244 -8.40 92.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 309 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE2 REMARK 620 2 ASN A 82 OD1 68.6 REMARK 620 3 GLU A 88 OE1 139.5 82.6 REMARK 620 4 ASN A 105 OD1 59.0 123.0 153.9 REMARK 620 5 ASP A 106 O 120.3 160.8 80.7 73.3 REMARK 620 6 ASP A 106 OD1 67.3 91.8 86.4 87.9 77.9 REMARK 620 7 C4Z A 308 OBG 68.8 75.6 131.8 66.3 122.9 135.9 REMARK 620 8 C4Z A 308 OBF 124.7 118.9 93.7 78.5 71.7 149.1 62.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 311 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 168 O REMARK 620 2 HOH A 429 O 65.0 REMARK 620 N 1 DBREF 6EYI A 1 280 UNP P16581 LYAM2_HUMAN 22 301 SEQRES 1 A 280 TRP SER TYR ASN THR SER THR GLU ALA MET THR TYR ASP SEQRES 2 A 280 GLU ALA SER ALA TYR CYS GLN GLN ARG TYR THR HIS LEU SEQRES 3 A 280 VAL ALA ILE GLN ASN LYS GLU GLU ILE GLU TYR LEU ASN SEQRES 4 A 280 SER ILE LEU SER TYR SER PRO SER TYR TYR TRP ILE GLY SEQRES 5 A 280 ILE ARG LYS VAL ASN ASN VAL TRP VAL TRP VAL GLY THR SEQRES 6 A 280 GLN LYS PRO LEU THR GLU GLU ALA LYS ASN TRP ALA PRO SEQRES 7 A 280 GLY GLU PRO ASN ASN ARG GLN LYS ASP GLU ASP CYS VAL SEQRES 8 A 280 GLU ILE TYR ILE LYS ARG GLU LYS ASP VAL GLY MET TRP SEQRES 9 A 280 ASN ASP GLU ARG CYS SER LYS LYS LYS LEU ALA LEU CYS SEQRES 10 A 280 TYR THR ALA ALA CYS THR ASN THR SER CYS SER GLY HIS SEQRES 11 A 280 GLY GLU CYS VAL GLU THR ILE ASN ASN TYR THR CYS LYS SEQRES 12 A 280 CYS ASP PRO GLY PHE SER GLY LEU LYS CYS GLU GLN ILE SEQRES 13 A 280 VAL ASN CYS THR ALA LEU GLU SER PRO GLU HIS GLY SER SEQRES 14 A 280 LEU VAL CYS SER HIS PRO LEU GLY ASN PHE SER TYR ASN SEQRES 15 A 280 SER SER CYS SER ILE SER CYS ASP ARG GLY TYR LEU PRO SEQRES 16 A 280 SER SER MET GLU THR MET GLN CYS MET SER SER GLY GLU SEQRES 17 A 280 TRP SER ALA PRO ILE PRO ALA CYS ASN VAL VAL GLU CYS SEQRES 18 A 280 ASP ALA VAL THR ASN PRO ALA ASN GLY PHE VAL GLU CYS SEQRES 19 A 280 PHE GLN ASN PRO GLY SER PHE PRO TRP ASN THR THR CYS SEQRES 20 A 280 THR PHE ASP CYS GLU GLU GLY PHE GLU LEU MET GLY ALA SEQRES 21 A 280 GLN SER LEU GLN CYS THR SER SER GLY ASN TRP ASP ASN SEQRES 22 A 280 GLU LYS PRO THR CYS LYS ALA HET NAG A 301 14 HET NAG A 302 14 HET NAG A 303 14 HET NAG A 304 14 HET NAG A 305 14 HET NAG A 306 14 HET NAG A 307 14 HET C4Z A 308 40 HET CA A 309 1 HET CA A 310 1 HET CA A 311 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM C4Z (2~{R})-3-CYCLOHEXYL-2-[(2~{R},3~{S},4~{S},5~{R}, HETNAM 2 C4Z 6~{R})-2-(HYDROXYMETHYL)-6-[(1~{R},2~{R})-2-[(2~{S}, HETNAM 3 C4Z 3~{S},4~{R},5~{S},6~{S})-6-METHYL-3,4,5- HETNAM 4 C4Z TRIS(OXIDANYL)OXAN-2-YL]OXYCYCLOHEXYL]OXY-3,5- HETNAM 5 C4Z BIS(OXIDANYL)OXAN-4-YL]OXY-PROPANOIC ACID HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 7(C8 H15 N O6) FORMUL 9 C4Z C27 H46 O13 FORMUL 10 CA 3(CA 2+) FORMUL 13 HOH *127(H2 O) HELIX 1 AA1 THR A 11 ARG A 22 1 12 HELIX 2 AA2 ASN A 31 LEU A 42 1 12 SHEET 1 AA1 5 SER A 2 THR A 5 0 SHEET 2 AA1 5 LEU A 114 THR A 119 -1 O CYS A 117 N ASN A 4 SHEET 3 AA1 5 TYR A 49 VAL A 56 1 N TRP A 50 O LEU A 114 SHEET 4 AA1 5 VAL A 59 TRP A 62 -1 O VAL A 61 N ARG A 54 SHEET 5 AA1 5 LYS A 67 PRO A 68 -1 O LYS A 67 N TRP A 62 SHEET 1 AA2 5 HIS A 25 LEU A 26 0 SHEET 2 AA2 5 LEU A 114 THR A 119 -1 O TYR A 118 N HIS A 25 SHEET 3 AA2 5 TYR A 49 VAL A 56 1 N TRP A 50 O LEU A 114 SHEET 4 AA2 5 CYS A 90 ILE A 93 -1 O ILE A 93 N TYR A 49 SHEET 5 AA2 5 TRP A 104 GLU A 107 -1 O GLU A 107 N CYS A 90 SHEET 1 AA3 2 GLY A 131 GLU A 135 0 SHEET 2 AA3 2 TYR A 140 CYS A 144 -1 O THR A 141 N VAL A 134 SHEET 1 AA4 2 PHE A 148 SER A 149 0 SHEET 2 AA4 2 GLN A 155 ILE A 156 -1 O GLN A 155 N SER A 149 SHEET 1 AA5 3 GLY A 168 SER A 173 0 SHEET 2 AA5 3 SER A 184 CYS A 189 -1 O SER A 184 N SER A 173 SHEET 3 AA5 3 MET A 201 GLN A 202 -1 O MET A 201 N CYS A 185 SHEET 1 AA6 2 TYR A 193 PRO A 195 0 SHEET 2 AA6 2 CYS A 216 VAL A 218 -1 O ASN A 217 N LEU A 194 SHEET 1 AA7 3 GLY A 230 GLU A 233 0 SHEET 2 AA7 3 THR A 246 CYS A 251 -1 O ASP A 250 N PHE A 231 SHEET 3 AA7 3 SER A 262 GLN A 264 -1 O LEU A 263 N CYS A 247 SHEET 1 AA8 2 GLU A 256 MET A 258 0 SHEET 2 AA8 2 THR A 277 LYS A 279 -1 O THR A 277 N MET A 258 SSBOND 1 CYS A 19 CYS A 117 1555 1555 2.05 SSBOND 2 CYS A 90 CYS A 109 1555 1555 2.05 SSBOND 3 CYS A 122 CYS A 133 1555 1555 2.04 SSBOND 4 CYS A 127 CYS A 142 1555 1555 2.04 SSBOND 5 CYS A 144 CYS A 153 1555 1555 2.05 SSBOND 6 CYS A 159 CYS A 203 1555 1555 2.03 SSBOND 7 CYS A 172 CYS A 185 1555 1555 2.05 SSBOND 8 CYS A 189 CYS A 216 1555 1555 2.04 SSBOND 9 CYS A 221 CYS A 265 1555 1555 2.03 SSBOND 10 CYS A 234 CYS A 247 1555 1555 2.05 SSBOND 11 CYS A 251 CYS A 278 1555 1555 2.03 LINK ND2 ASN A 4 C1 NAG A 305 1555 1555 1.44 LINK ND2 ASN A 124 C1 NAG A 306 1555 1555 1.43 LINK ND2 ASN A 139 C1 NAG A 302 1555 1555 1.44 LINK ND2 ASN A 158 C1 NAG A 303 1555 1555 1.43 LINK ND2 ASN A 178 C1 NAG A 304 1555 1555 1.43 LINK ND2 ASN A 182 C1 NAG A 301 1555 1555 1.43 LINK ND2 ASN A 244 C1 NAG A 307 1555 1555 1.43 LINK OE2 GLU A 80 CA CA A 309 1555 1555 2.87 LINK OD1 ASN A 82 CA CA A 309 1555 1555 2.50 LINK OE1 GLU A 88 CA CA A 309 1555 1555 2.22 LINK OD2 ASP A 89 CA CA A 310 1555 1555 2.99 LINK OD1 ASN A 105 CA CA A 309 1555 1555 2.78 LINK O ASP A 106 CA CA A 309 1555 1555 2.46 LINK OD1 ASP A 106 CA CA A 309 1555 1555 2.26 LINK O GLY A 168 CA CA A 311 1555 1555 2.44 LINK OBG C4Z A 308 CA CA A 309 1555 1555 2.73 LINK OBF C4Z A 308 CA CA A 309 1555 1555 2.56 LINK CA CA A 311 O HOH A 429 1555 1555 3.02 CISPEP 1 GLU A 80 PRO A 81 0 -4.02 CRYST1 93.590 72.940 52.520 90.00 94.16 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010685 0.000000 0.000777 0.00000 SCALE2 0.000000 0.013710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019091 0.00000