HEADER CELL ADHESION 13-NOV-17 6EYJ TITLE E-SELECTIN LECTIN, EGF-LIKE AND TWO SCR DOMAINS COMPLEXED WITH TITLE 2 GLYCOMIMETIC LIGAND NV354 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E-SELECTIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CD62 ANTIGEN-LIKE FAMILY MEMBER E,ENDOTHELIAL LEUKOCYTE COMPND 5 ADHESION MOLECULE 1,ELAM-1,LEUKOCYTE-ENDOTHELIAL CELL ADHESION COMPND 6 MOLECULE 2,LECAM2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SELE, ELAM1; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: CHO; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCDNA3.1 KEYWDS CELL ADHESION, CELL-ADHESION MOLECULE, C-TYPE LECTIN, INFLAMMATION, KEYWDS 2 LEUKOCYTE, GLYCOMIMETIC, CATCH-BOND EXPDTA X-RAY DIFFRACTION AUTHOR R.P.JAKOB,P.ZIHLMANN,R.C.PRESTON,N.VARGA,B.ERNST,T.MAIER REVDAT 4 16-OCT-24 6EYJ 1 REMARK REVDAT 3 17-JAN-24 6EYJ 1 HETSYN REVDAT 2 29-JUL-20 6EYJ 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 21-NOV-18 6EYJ 0 JRNL AUTH N.VARGA,P.ZIHLMANN,R.C.PRESTON,R.P.JAKOB,T.MAIER,B.ERNST JRNL TITL E-SELECTIN LECTIN WITH DIFFERENT GLYCOMIMETIC LIGANDS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 33972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1650 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 17 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.27 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.41 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2888 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2671 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2756 REMARK 3 BIN R VALUE (WORKING SET) : 0.2663 REMARK 3 BIN FREE R VALUE : 0.2837 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.57 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 132 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4358 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 284 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.48320 REMARK 3 B22 (A**2) : -3.90060 REMARK 3 B33 (A**2) : -8.58260 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.18620 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.370 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.286 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.216 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.280 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.216 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4792 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6564 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2172 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 134 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 680 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4792 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 682 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5302 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.12 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.40 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.89 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 - A|52 } REMARK 3 ORIGIN FOR THE GROUP (A): -14.2179 -52.8042 79.8190 REMARK 3 T TENSOR REMARK 3 T11: -0.2593 T22: -0.0897 REMARK 3 T33: -0.1406 T12: 0.0761 REMARK 3 T13: -0.0380 T23: -0.0768 REMARK 3 L TENSOR REMARK 3 L11: 9.1645 L22: 3.4916 REMARK 3 L33: 3.9414 L12: -4.3259 REMARK 3 L13: -2.1315 L23: 1.1045 REMARK 3 S TENSOR REMARK 3 S11: -0.2648 S12: -0.3476 S13: -0.2836 REMARK 3 S21: -0.1984 S22: 0.0732 S23: 0.1802 REMARK 3 S31: -0.2966 S32: -0.4181 S33: 0.1916 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|53 - A|115 } REMARK 3 ORIGIN FOR THE GROUP (A): -17.3631 -42.2551 87.3866 REMARK 3 T TENSOR REMARK 3 T11: -0.0907 T22: 0.0370 REMARK 3 T33: 0.1080 T12: 0.1559 REMARK 3 T13: -0.0460 T23: -0.0928 REMARK 3 L TENSOR REMARK 3 L11: 3.7340 L22: 2.0432 REMARK 3 L33: 7.4436 L12: -1.3699 REMARK 3 L13: 0.5975 L23: 2.3472 REMARK 3 S TENSOR REMARK 3 S11: 0.0726 S12: -0.3325 S13: 0.4730 REMARK 3 S21: -0.3386 S22: -0.1664 S23: 0.3194 REMARK 3 S31: -1.0634 S32: -0.2681 S33: 0.0938 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|116 - A|167 } REMARK 3 ORIGIN FOR THE GROUP (A): 13.1857 -66.3442 76.9954 REMARK 3 T TENSOR REMARK 3 T11: -0.3896 T22: -0.1036 REMARK 3 T33: 0.4012 T12: 0.0439 REMARK 3 T13: 0.0017 T23: 0.0527 REMARK 3 L TENSOR REMARK 3 L11: 7.7062 L22: 2.0239 REMARK 3 L33: 0.7059 L12: -5.4244 REMARK 3 L13: -0.1517 L23: 0.3677 REMARK 3 S TENSOR REMARK 3 S11: -0.0822 S12: -0.1297 S13: -0.2208 REMARK 3 S21: 0.1755 S22: -0.0123 S23: -0.0917 REMARK 3 S31: -0.0870 S32: 0.1928 S33: 0.0945 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|168 - A|218 } REMARK 3 ORIGIN FOR THE GROUP (A): 37.5237 -77.2349 78.4086 REMARK 3 T TENSOR REMARK 3 T11: -0.4270 T22: -0.0207 REMARK 3 T33: 0.3398 T12: 0.0712 REMARK 3 T13: 0.0684 T23: 0.2303 REMARK 3 L TENSOR REMARK 3 L11: 10.4039 L22: 0.0000 REMARK 3 L33: 0.4578 L12: -3.4975 REMARK 3 L13: 3.3771 L23: 1.0027 REMARK 3 S TENSOR REMARK 3 S11: -0.0509 S12: -0.1061 S13: -0.0595 REMARK 3 S21: 0.0269 S22: 0.0560 S23: 0.2876 REMARK 3 S31: 0.0267 S32: 0.3409 S33: -0.0051 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|219 - A|280 } REMARK 3 ORIGIN FOR THE GROUP (A): 72.3941 -90.5511 77.0689 REMARK 3 T TENSOR REMARK 3 T11: -0.3981 T22: -0.2842 REMARK 3 T33: 0.5096 T12: 0.0617 REMARK 3 T13: 0.0950 T23: 0.1812 REMARK 3 L TENSOR REMARK 3 L11: 12.3672 L22: 8.4119 REMARK 3 L33: 3.8578 L12: -0.0867 REMARK 3 L13: 3.1553 L23: 2.9391 REMARK 3 S TENSOR REMARK 3 S11: 0.2356 S12: -0.3439 S13: -1.2190 REMARK 3 S21: -0.0599 S22: 0.3805 S23: -1.6401 REMARK 3 S31: 0.3191 S32: -0.0139 S33: -0.6161 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { B|1 - B|52 } REMARK 3 ORIGIN FOR THE GROUP (A): 5.2700 -51.2507 59.9256 REMARK 3 T TENSOR REMARK 3 T11: -0.2167 T22: -0.2977 REMARK 3 T33: -0.1407 T12: -0.0383 REMARK 3 T13: -0.0304 T23: 0.1354 REMARK 3 L TENSOR REMARK 3 L11: 9.3481 L22: 3.2186 REMARK 3 L33: 3.0856 L12: 2.8803 REMARK 3 L13: -2.0186 L23: -0.0666 REMARK 3 S TENSOR REMARK 3 S11: 0.1425 S12: 0.0457 S13: 0.1607 REMARK 3 S21: 0.2919 S22: -0.1662 S23: -0.3496 REMARK 3 S31: -0.1304 S32: 0.0246 S33: 0.0237 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { B|53 - B|115 } REMARK 3 ORIGIN FOR THE GROUP (A): 8.5288 -40.0409 53.6483 REMARK 3 T TENSOR REMARK 3 T11: -0.0374 T22: -0.2643 REMARK 3 T33: 0.0499 T12: -0.0259 REMARK 3 T13: 0.0797 T23: 0.1327 REMARK 3 L TENSOR REMARK 3 L11: 4.0315 L22: 5.4054 REMARK 3 L33: 7.8467 L12: 0.9011 REMARK 3 L13: -1.1812 L23: -0.6674 REMARK 3 S TENSOR REMARK 3 S11: 0.3841 S12: 0.2387 S13: 0.8302 REMARK 3 S21: 0.3484 S22: -0.1718 S23: 0.0308 REMARK 3 S31: -1.3003 S32: -0.2117 S33: -0.2122 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { B|116 - B|167 } REMARK 3 ORIGIN FOR THE GROUP (A): -22.1718 -65.1554 60.7764 REMARK 3 T TENSOR REMARK 3 T11: -0.2830 T22: -0.2058 REMARK 3 T33: 0.4721 T12: -0.0588 REMARK 3 T13: -0.0221 T23: 0.0462 REMARK 3 L TENSOR REMARK 3 L11: 12.9702 L22: 1.2791 REMARK 3 L33: 0.3103 L12: 5.8571 REMARK 3 L13: 1.1830 L23: 0.2752 REMARK 3 S TENSOR REMARK 3 S11: 0.0582 S12: -0.0347 S13: -0.6111 REMARK 3 S21: -0.0710 S22: 0.0873 S23: 0.1074 REMARK 3 S31: -0.0828 S32: -0.1798 S33: -0.1455 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { B|168 - B|218 } REMARK 3 ORIGIN FOR THE GROUP (A): -46.5701 -75.5701 57.8292 REMARK 3 T TENSOR REMARK 3 T11: -0.2997 T22: -0.1823 REMARK 3 T33: 0.4508 T12: -0.0584 REMARK 3 T13: 0.0216 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 5.2574 L22: 0.0000 REMARK 3 L33: 0.2084 L12: 1.2473 REMARK 3 L13: 1.7700 L23: 0.0489 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: -0.4772 S13: -0.5143 REMARK 3 S21: -0.1403 S22: -0.2215 S23: -0.4642 REMARK 3 S31: 0.0070 S32: -0.1933 S33: 0.2098 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { B|219 - B|280 } REMARK 3 ORIGIN FOR THE GROUP (A): -81.5180 -89.0114 56.4812 REMARK 3 T TENSOR REMARK 3 T11: -0.1564 T22: -0.1971 REMARK 3 T33: 0.5098 T12: -0.0427 REMARK 3 T13: 0.0939 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 10.5731 L22: 9.0205 REMARK 3 L33: 4.6886 L12: 0.5220 REMARK 3 L13: 5.4958 L23: 0.1564 REMARK 3 S TENSOR REMARK 3 S11: 0.0588 S12: 0.1694 S13: -1.0967 REMARK 3 S21: 0.1337 S22: 0.1863 S23: 1.5164 REMARK 3 S31: 0.2475 S32: -0.2620 S33: -0.2451 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200007439. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33972 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 56.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.80900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4C16 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CACL2, 0.1 M MOPS PH 6.2, 11-14% REMARK 280 PEG8000, AFTER MICROSEEDING, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.52000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 234 SG CYS B 247 1.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 29 -79.58 -96.22 REMARK 500 GLN A 30 106.42 73.46 REMARK 500 TYR A 48 -160.74 69.38 REMARK 500 LYS A 86 156.28 64.71 REMARK 500 SER A 128 19.35 57.43 REMARK 500 ASN A 139 -129.60 -158.62 REMARK 500 HIS A 167 23.68 83.73 REMARK 500 ASN A 244 -4.12 90.60 REMARK 500 ALA B 28 -100.24 -110.79 REMARK 500 ILE B 29 99.98 -22.84 REMARK 500 TYR B 48 -167.27 66.58 REMARK 500 LYS B 86 155.44 65.32 REMARK 500 SER B 128 16.56 58.36 REMARK 500 ASN B 139 -130.17 -158.10 REMARK 500 HIS B 167 21.47 83.11 REMARK 500 TYR B 181 129.43 -39.62 REMARK 500 ASN B 244 -5.64 91.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 309 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASN A 82 OD1 68.4 REMARK 620 3 GLU A 88 OE1 136.8 79.4 REMARK 620 4 ASN A 105 OD1 67.6 131.0 149.5 REMARK 620 5 ASP A 106 O 129.3 153.7 74.9 74.6 REMARK 620 6 ASP A 106 OD1 72.1 93.8 82.4 92.5 77.1 REMARK 620 7 C5H A 308 OBB 67.2 70.6 128.0 73.4 131.4 139.4 REMARK 620 8 C5H A 308 OBD 128.9 114.2 90.0 79.1 72.0 149.2 66.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 309 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 80 OE1 REMARK 620 2 ASN B 82 OD1 72.6 REMARK 620 3 GLU B 88 OE1 140.2 81.1 REMARK 620 4 ASN B 105 OD1 67.3 138.0 139.5 REMARK 620 5 ASP B 106 O 127.6 143.8 64.7 74.8 REMARK 620 6 ASP B 106 OD1 73.4 90.9 77.7 89.4 71.3 REMARK 620 7 C5H B 308 OBB 69.8 74.8 131.2 80.1 137.0 143.1 REMARK 620 8 C5H B 308 OBD 134.2 118.4 84.6 83.3 71.7 143.0 71.1 REMARK 620 N 1 2 3 4 5 6 7 DBREF 6EYJ A 1 280 UNP P16581 LYAM2_HUMAN 22 301 DBREF 6EYJ B 1 280 UNP P16581 LYAM2_HUMAN 22 301 SEQRES 1 A 280 TRP SER TYR ASN THR SER THR GLU ALA MET THR TYR ASP SEQRES 2 A 280 GLU ALA SER ALA TYR CYS GLN GLN ARG TYR THR HIS LEU SEQRES 3 A 280 VAL ALA ILE GLN ASN LYS GLU GLU ILE GLU TYR LEU ASN SEQRES 4 A 280 SER ILE LEU SER TYR SER PRO SER TYR TYR TRP ILE GLY SEQRES 5 A 280 ILE ARG LYS VAL ASN ASN VAL TRP VAL TRP VAL GLY THR SEQRES 6 A 280 GLN LYS PRO LEU THR GLU GLU ALA LYS ASN TRP ALA PRO SEQRES 7 A 280 GLY GLU PRO ASN ASN ARG GLN LYS ASP GLU ASP CYS VAL SEQRES 8 A 280 GLU ILE TYR ILE LYS ARG GLU LYS ASP VAL GLY MET TRP SEQRES 9 A 280 ASN ASP GLU ARG CYS SER LYS LYS LYS LEU ALA LEU CYS SEQRES 10 A 280 TYR THR ALA ALA CYS THR ASN THR SER CYS SER GLY HIS SEQRES 11 A 280 GLY GLU CYS VAL GLU THR ILE ASN ASN TYR THR CYS LYS SEQRES 12 A 280 CYS ASP PRO GLY PHE SER GLY LEU LYS CYS GLU GLN ILE SEQRES 13 A 280 VAL ASN CYS THR ALA LEU GLU SER PRO GLU HIS GLY SER SEQRES 14 A 280 LEU VAL CYS SER HIS PRO LEU GLY ASN PHE SER TYR ASN SEQRES 15 A 280 SER SER CYS SER ILE SER CYS ASP ARG GLY TYR LEU PRO SEQRES 16 A 280 SER SER MET GLU THR MET GLN CYS MET SER SER GLY GLU SEQRES 17 A 280 TRP SER ALA PRO ILE PRO ALA CYS ASN VAL VAL GLU CYS SEQRES 18 A 280 ASP ALA VAL THR ASN PRO ALA ASN GLY PHE VAL GLU CYS SEQRES 19 A 280 PHE GLN ASN PRO GLY SER PHE PRO TRP ASN THR THR CYS SEQRES 20 A 280 THR PHE ASP CYS GLU GLU GLY PHE GLU LEU MET GLY ALA SEQRES 21 A 280 GLN SER LEU GLN CYS THR SER SER GLY ASN TRP ASP ASN SEQRES 22 A 280 GLU LYS PRO THR CYS LYS ALA SEQRES 1 B 280 TRP SER TYR ASN THR SER THR GLU ALA MET THR TYR ASP SEQRES 2 B 280 GLU ALA SER ALA TYR CYS GLN GLN ARG TYR THR HIS LEU SEQRES 3 B 280 VAL ALA ILE GLN ASN LYS GLU GLU ILE GLU TYR LEU ASN SEQRES 4 B 280 SER ILE LEU SER TYR SER PRO SER TYR TYR TRP ILE GLY SEQRES 5 B 280 ILE ARG LYS VAL ASN ASN VAL TRP VAL TRP VAL GLY THR SEQRES 6 B 280 GLN LYS PRO LEU THR GLU GLU ALA LYS ASN TRP ALA PRO SEQRES 7 B 280 GLY GLU PRO ASN ASN ARG GLN LYS ASP GLU ASP CYS VAL SEQRES 8 B 280 GLU ILE TYR ILE LYS ARG GLU LYS ASP VAL GLY MET TRP SEQRES 9 B 280 ASN ASP GLU ARG CYS SER LYS LYS LYS LEU ALA LEU CYS SEQRES 10 B 280 TYR THR ALA ALA CYS THR ASN THR SER CYS SER GLY HIS SEQRES 11 B 280 GLY GLU CYS VAL GLU THR ILE ASN ASN TYR THR CYS LYS SEQRES 12 B 280 CYS ASP PRO GLY PHE SER GLY LEU LYS CYS GLU GLN ILE SEQRES 13 B 280 VAL ASN CYS THR ALA LEU GLU SER PRO GLU HIS GLY SER SEQRES 14 B 280 LEU VAL CYS SER HIS PRO LEU GLY ASN PHE SER TYR ASN SEQRES 15 B 280 SER SER CYS SER ILE SER CYS ASP ARG GLY TYR LEU PRO SEQRES 16 B 280 SER SER MET GLU THR MET GLN CYS MET SER SER GLY GLU SEQRES 17 B 280 TRP SER ALA PRO ILE PRO ALA CYS ASN VAL VAL GLU CYS SEQRES 18 B 280 ASP ALA VAL THR ASN PRO ALA ASN GLY PHE VAL GLU CYS SEQRES 19 B 280 PHE GLN ASN PRO GLY SER PHE PRO TRP ASN THR THR CYS SEQRES 20 B 280 THR PHE ASP CYS GLU GLU GLY PHE GLU LEU MET GLY ALA SEQRES 21 B 280 GLN SER LEU GLN CYS THR SER SER GLY ASN TRP ASP ASN SEQRES 22 B 280 GLU LYS PRO THR CYS LYS ALA HET NAG A 301 14 HET NAG A 302 14 HET NAG A 303 14 HET NAG A 304 14 HET NAG A 305 14 HET NAG A 306 14 HET NAG A 307 14 HET C5H A 308 43 HET CA A 309 1 HET NAG B 301 14 HET NAG B 302 14 HET NAG B 303 14 HET NAG B 304 14 HET NAG B 305 14 HET NAG B 306 14 HET NAG B 307 14 HET C5H B 308 43 HET CA B 309 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM C5H (2~{S})-3-CYCLOHEXYL-2-[(2~{R},3~{S},4~{S},5~{R}, HETNAM 2 C5H 6~{R})-2-(HYDROXYMETHYL)-3,5-BIS(OXIDANYL)-6-[(1~{R}, HETNAM 3 C5H 2~{R})-2-[(2~{R},3~{S},4~{R},5~{S},6~{R})-3,4,5- HETNAM 4 C5H TRIS(OXIDANYL)-6-(TRIFLUOROMETHYL)OXAN-2- HETNAM 5 C5H YL]OXYCYCLOHEXYL]OXY-OXAN-4-YL]OXY-PROPANOIC ACID HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 14(C8 H15 N O6) FORMUL 10 C5H 2(C27 H43 F3 O13) FORMUL 11 CA 2(CA 2+) FORMUL 21 HOH *252(H2 O) HELIX 1 AA1 THR A 11 ARG A 22 1 12 HELIX 2 AA2 ASN A 31 LEU A 42 1 12 HELIX 3 AA3 THR B 11 ARG B 22 1 12 HELIX 4 AA4 ASN B 31 LEU B 42 1 12 SHEET 1 AA1 5 SER A 2 THR A 5 0 SHEET 2 AA1 5 LEU A 114 THR A 119 -1 O CYS A 117 N ASN A 4 SHEET 3 AA1 5 TYR A 49 VAL A 56 1 N TRP A 50 O LEU A 114 SHEET 4 AA1 5 VAL A 59 TRP A 62 -1 O VAL A 59 N VAL A 56 SHEET 5 AA1 5 LYS A 67 PRO A 68 -1 O LYS A 67 N TRP A 62 SHEET 1 AA2 5 HIS A 25 LEU A 26 0 SHEET 2 AA2 5 LEU A 114 THR A 119 -1 O TYR A 118 N HIS A 25 SHEET 3 AA2 5 TYR A 49 VAL A 56 1 N TRP A 50 O LEU A 114 SHEET 4 AA2 5 CYS A 90 ILE A 93 -1 O ILE A 93 N TYR A 49 SHEET 5 AA2 5 TRP A 104 GLU A 107 -1 O GLU A 107 N CYS A 90 SHEET 1 AA3 2 GLY A 131 GLU A 135 0 SHEET 2 AA3 2 TYR A 140 CYS A 144 -1 O THR A 141 N VAL A 134 SHEET 1 AA4 2 PHE A 148 SER A 149 0 SHEET 2 AA4 2 GLN A 155 ILE A 156 -1 O GLN A 155 N SER A 149 SHEET 1 AA5 3 GLY A 168 SER A 173 0 SHEET 2 AA5 3 SER A 184 CYS A 189 -1 O SER A 184 N SER A 173 SHEET 3 AA5 3 MET A 201 GLN A 202 -1 O MET A 201 N CYS A 185 SHEET 1 AA6 2 TYR A 193 PRO A 195 0 SHEET 2 AA6 2 CYS A 216 VAL A 218 -1 O ASN A 217 N LEU A 194 SHEET 1 AA7 3 GLY A 230 GLU A 233 0 SHEET 2 AA7 3 THR A 246 CYS A 251 -1 O THR A 248 N GLU A 233 SHEET 3 AA7 3 SER A 262 GLN A 264 -1 O LEU A 263 N CYS A 247 SHEET 1 AA8 2 GLU A 256 MET A 258 0 SHEET 2 AA8 2 THR A 277 LYS A 279 -1 O THR A 277 N MET A 258 SHEET 1 AA9 4 SER B 2 THR B 5 0 SHEET 2 AA9 4 LEU B 114 THR B 119 -1 O CYS B 117 N ASN B 4 SHEET 3 AA9 4 TYR B 49 VAL B 56 1 N TRP B 50 O LEU B 114 SHEET 4 AA9 4 VAL B 59 TRP B 62 -1 O VAL B 59 N VAL B 56 SHEET 1 AB1 5 HIS B 25 LEU B 26 0 SHEET 2 AB1 5 LEU B 114 THR B 119 -1 O TYR B 118 N HIS B 25 SHEET 3 AB1 5 TYR B 49 VAL B 56 1 N TRP B 50 O LEU B 114 SHEET 4 AB1 5 CYS B 90 ILE B 93 -1 O ILE B 93 N TYR B 49 SHEET 5 AB1 5 TRP B 104 GLU B 107 -1 O GLU B 107 N CYS B 90 SHEET 1 AB2 2 GLY B 131 GLU B 135 0 SHEET 2 AB2 2 TYR B 140 CYS B 144 -1 O THR B 141 N VAL B 134 SHEET 1 AB3 2 PHE B 148 SER B 149 0 SHEET 2 AB3 2 GLN B 155 ILE B 156 -1 O GLN B 155 N SER B 149 SHEET 1 AB4 3 GLY B 168 SER B 173 0 SHEET 2 AB4 3 SER B 184 CYS B 189 -1 O SER B 184 N SER B 173 SHEET 3 AB4 3 MET B 201 GLN B 202 -1 O MET B 201 N CYS B 185 SHEET 1 AB5 2 TYR B 193 PRO B 195 0 SHEET 2 AB5 2 CYS B 216 VAL B 218 -1 O ASN B 217 N LEU B 194 SHEET 1 AB6 3 GLY B 230 GLU B 233 0 SHEET 2 AB6 3 THR B 246 CYS B 251 -1 O THR B 248 N GLU B 233 SHEET 3 AB6 3 SER B 262 GLN B 264 -1 O LEU B 263 N CYS B 247 SHEET 1 AB7 2 GLU B 256 MET B 258 0 SHEET 2 AB7 2 THR B 277 LYS B 279 -1 O THR B 277 N MET B 258 SSBOND 1 CYS A 19 CYS A 117 1555 1555 2.05 SSBOND 2 CYS A 90 CYS A 109 1555 1555 2.04 SSBOND 3 CYS A 122 CYS A 133 1555 1555 2.05 SSBOND 4 CYS A 127 CYS A 142 1555 1555 2.04 SSBOND 5 CYS A 144 CYS A 153 1555 1555 2.05 SSBOND 6 CYS A 159 CYS A 203 1555 1555 2.03 SSBOND 7 CYS A 172 CYS A 185 1555 1555 2.05 SSBOND 8 CYS A 189 CYS A 216 1555 1555 2.05 SSBOND 9 CYS A 221 CYS A 265 1555 1555 2.03 SSBOND 10 CYS A 234 CYS A 247 1555 1555 2.04 SSBOND 11 CYS A 251 CYS A 278 1555 1555 2.04 SSBOND 12 CYS B 19 CYS B 117 1555 1555 2.04 SSBOND 13 CYS B 90 CYS B 109 1555 1555 2.04 SSBOND 14 CYS B 122 CYS B 133 1555 1555 2.04 SSBOND 15 CYS B 127 CYS B 142 1555 1555 2.04 SSBOND 16 CYS B 144 CYS B 153 1555 1555 2.06 SSBOND 17 CYS B 159 CYS B 203 1555 1555 2.03 SSBOND 18 CYS B 172 CYS B 185 1555 1555 2.05 SSBOND 19 CYS B 189 CYS B 216 1555 1555 2.04 SSBOND 20 CYS B 221 CYS B 265 1555 1555 2.01 SSBOND 21 CYS B 251 CYS B 278 1555 1555 2.04 LINK ND2 ASN A 4 C1 NAG A 305 1555 1555 1.43 LINK ND2 ASN A 124 C1 NAG A 306 1555 1555 1.43 LINK ND2 ASN A 139 C1 NAG A 302 1555 1555 1.43 LINK ND2 ASN A 158 C1 NAG A 303 1555 1555 1.44 LINK ND2 ASN A 178 C1 NAG A 304 1555 1555 1.43 LINK ND2 ASN A 182 C1 NAG A 301 1555 1555 1.43 LINK ND2 ASN A 244 C1 NAG A 307 1555 1555 1.43 LINK ND2 ASN B 4 C1 NAG B 305 1555 1555 1.44 LINK ND2 ASN B 124 C1 NAG B 306 1555 1555 1.43 LINK ND2 ASN B 139 C1 NAG B 302 1555 1555 1.43 LINK ND2 ASN B 158 C1 NAG B 303 1555 1555 1.43 LINK ND2 ASN B 178 C1 NAG B 304 1555 1555 1.44 LINK ND2 ASN B 182 C1 NAG B 301 1555 1555 1.43 LINK ND2 ASN B 244 C1 NAG B 307 1555 1555 1.43 LINK OE1 GLU A 80 CA CA A 309 1555 1555 2.79 LINK OD1 ASN A 82 CA CA A 309 1555 1555 2.60 LINK OE1 GLU A 88 CA CA A 309 1555 1555 2.38 LINK OD1 ASN A 105 CA CA A 309 1555 1555 2.59 LINK O ASP A 106 CA CA A 309 1555 1555 2.53 LINK OD1 ASP A 106 CA CA A 309 1555 1555 2.25 LINK OBB C5H A 308 CA CA A 309 1555 1555 2.63 LINK OBD C5H A 308 CA CA A 309 1555 1555 2.28 LINK OE1 GLU B 80 CA CA B 309 1555 1555 2.67 LINK OD1 ASN B 82 CA CA B 309 1555 1555 2.56 LINK OE1 GLU B 88 CA CA B 309 1555 1555 2.41 LINK OD1 ASN B 105 CA CA B 309 1555 1555 2.54 LINK O ASP B 106 CA CA B 309 1555 1555 2.64 LINK OD1 ASP B 106 CA CA B 309 1555 1555 2.43 LINK OBB C5H B 308 CA CA B 309 1555 1555 2.43 LINK OBD C5H B 308 CA CA B 309 1555 1555 2.21 CISPEP 1 GLU A 80 PRO A 81 0 -5.92 CISPEP 2 GLU B 80 PRO B 81 0 -3.19 CRYST1 52.580 71.040 92.160 90.00 93.73 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019019 0.000000 0.001240 0.00000 SCALE2 0.000000 0.014077 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010874 0.00000