HEADER FLAVOPROTEIN 14-NOV-17 6EZB
TITLE CRYSTAL STRUCTURE OF HUMAN TRNA-DIHYDROURIDINE(20) SYNTHASE CATALYTIC
TITLE 2 DOMAIN Q305K MUTANT
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TRNA-DIHYDROURIDINE(20) SYNTHASE [NAD(P)+]-LIKE;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: DIHYDROURIDINE SYNTHASE 2,UP-REGULATED IN LUNG CANCER
COMPND 5 PROTEIN 8,URLC8,TRNA-DIHYDROURIDINE SYNTHASE 2-LIKE,HDUS2;
COMPND 6 EC: 1.3.1.-;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: DUS2, DUS2L;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET11D
KEYWDS RNA BINDING PROTEIN, TRNA PROCESSING, FLAVOPROTEIN, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR C.BOU-NADER,D.BREGEON,L.PECQUEUR,M.FONTECAVE,D.HAMDANE
REVDAT 2 17-JAN-24 6EZB 1 REMARK
REVDAT 1 26-SEP-18 6EZB 0
JRNL AUTH C.BOU-NADER,D.BREGEON,L.PECQUEUR,M.FONTECAVE,D.HAMDANE
JRNL TITL ELECTROSTATIC POTENTIAL IN THE TRNA BINDING EVOLUTION OF
JRNL TITL 2 DIHYDROURIDINE SYNTHASES.
JRNL REF BIOCHEMISTRY V. 57 5407 2018
JRNL REFN ISSN 1520-4995
JRNL PMID 30149704
JRNL DOI 10.1021/ACS.BIOCHEM.8B00584
REMARK 2
REMARK 2 RESOLUTION. 2.25 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.3
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.61
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 77.2
REMARK 3 NUMBER OF REFLECTIONS : 16301
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.183
REMARK 3 R VALUE (WORKING SET) : 0.181
REMARK 3 FREE R VALUE : 0.223
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900
REMARK 3 FREE R VALUE TEST SET COUNT : 799
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 39
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.40
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 12.18
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 418
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2297
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 400
REMARK 3 BIN R VALUE (WORKING SET) : 0.2307
REMARK 3 BIN FREE R VALUE : 0.2086
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.31
REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2344
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 57
REMARK 3 SOLVENT ATOMS : 41
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.39
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.45930
REMARK 3 B22 (A**2) : -1.87340
REMARK 3 B33 (A**2) : 1.41410
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.300
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.270
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.209
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.271
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.211
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 2438 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 3315 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 833 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES : 433 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 2438 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 334 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 2767 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.13
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.83
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.72
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -18.7955 -24.0960 -23.0511
REMARK 3 T TENSOR
REMARK 3 T11: 0.0025 T22: -0.0272
REMARK 3 T33: -0.0126 T12: -0.0231
REMARK 3 T13: 0.0735 T23: -0.0224
REMARK 3 L TENSOR
REMARK 3 L11: 0.9432 L22: 3.8268
REMARK 3 L33: 1.4474 L12: 0.1006
REMARK 3 L13: -0.3068 L23: -0.9285
REMARK 3 S TENSOR
REMARK 3 S11: -0.0062 S12: -0.0652 S13: 0.0687
REMARK 3 S21: 0.5442 S22: -0.0087 S23: 0.0283
REMARK 3 S31: -0.0515 S32: 0.0567 S33: 0.0150
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6EZB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-NOV-17.
REMARK 100 THE DEPOSITION ID IS D_1200007494.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 07-DEC-16
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SOLEIL
REMARK 200 BEAMLINE : PROXIMA 2
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.980105
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20180409
REMARK 200 DATA SCALING SOFTWARE : STARANISO 1.10.15
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16301
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250
REMARK 200 RESOLUTION RANGE LOW (A) : 43.610
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4
REMARK 200 DATA REDUNDANCY : 9.200
REMARK 200 R MERGE (I) : 0.13700
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.6000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45
REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5
REMARK 200 DATA REDUNDANCY IN SHELL : 8.70
REMARK 200 R MERGE FOR SHELL (I) : 1.60900
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4XP7
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 58.17
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M AMMONIUM SULFATE, VAPOR
REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X,Y,-Z
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z+1/2
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.04000
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.05500
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.17500
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.04000
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.05500
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.17500
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.04000
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.05500
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.17500
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.04000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.05500
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.17500
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2530 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 13790 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 7
REMARK 465 HIS A 8
REMARK 465 HIS A 9
REMARK 465 HIS A 10
REMARK 465 LYS A 118
REMARK 465 GLN A 119
REMARK 465 TYR A 120
REMARK 465 SER A 121
REMARK 465 THR A 122
REMARK 465 LYS A 123
REMARK 465 ALA A 329
REMARK 465 GLN A 330
REMARK 465 GLN A 331
REMARK 465 ALA A 332
REMARK 465 ARG A 333
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 HIS A 11 CG ND1 CD2 CE1 NE2
REMARK 470 HIS A 12 CG ND1 CD2 CE1 NE2
REMARK 470 ARG A 71 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 78 CG CD OE1 OE2
REMARK 470 CYS A 116 SG
REMARK 470 LEU A 162 CG CD1 CD2
REMARK 470 GLU A 163 CG CD OE1 OE2
REMARK 470 LYS A 170 CG CD CE NZ
REMARK 470 ARG A 171 CG CD NE CZ NH1 NH2
REMARK 470 ARG A 174 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 186 CG CD CE NZ
REMARK 470 ARG A 187 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 188 CG CD OE1 OE2
REMARK 470 ARG A 190 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 198 CG CD OE1 OE2
REMARK 470 HIS A 218 CG ND1 CD2 CE1 NE2
REMARK 470 LYS A 254 CD CE NZ
REMARK 470 LYS A 305 CG CD CE NZ
REMARK 470 ARG A 308 CZ NH1 NH2
REMARK 470 GLU A 312 CD OE1 OE2
REMARK 470 GLU A 321 CG CD OE1 OE2
REMARK 470 GLU A 322 CG CD OE1 OE2
REMARK 470 GLU A 326 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 21 -42.67 71.88
REMARK 500 GLU A 188 -25.39 89.01
REMARK 500 ALA A 242 -94.69 -105.85
REMARK 500 ARG A 290 -90.69 41.29
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 6EZA RELATED DB: PDB
REMARK 900 E294K MUTANT
REMARK 900 RELATED ID: 6EZC RELATED DB: PDB
REMARK 900 E294KQ305K MUTANT
DBREF 6EZB A 14 333 UNP Q9NX74 DUS2L_HUMAN 14 333
SEQADV 6EZB MET A 7 UNP Q9NX74 INITIATING METHIONINE
SEQADV 6EZB HIS A 8 UNP Q9NX74 EXPRESSION TAG
SEQADV 6EZB HIS A 9 UNP Q9NX74 EXPRESSION TAG
SEQADV 6EZB HIS A 10 UNP Q9NX74 EXPRESSION TAG
SEQADV 6EZB HIS A 11 UNP Q9NX74 EXPRESSION TAG
SEQADV 6EZB HIS A 12 UNP Q9NX74 EXPRESSION TAG
SEQADV 6EZB HIS A 13 UNP Q9NX74 EXPRESSION TAG
SEQADV 6EZB LYS A 305 UNP Q9NX74 GLN 305 ENGINEERED MUTATION
SEQRES 1 A 327 MET HIS HIS HIS HIS HIS HIS LEU ILE LEU ALA PRO MET
SEQRES 2 A 327 VAL ARG VAL GLY THR LEU PRO MET ARG LEU LEU ALA LEU
SEQRES 3 A 327 ASP TYR GLY ALA ASP ILE VAL TYR CYS GLU GLU LEU ILE
SEQRES 4 A 327 ASP LEU LYS MET ILE GLN CYS LYS ARG VAL VAL ASN GLU
SEQRES 5 A 327 VAL LEU SER THR VAL ASP PHE VAL ALA PRO ASP ASP ARG
SEQRES 6 A 327 VAL VAL PHE ARG THR CYS GLU ARG GLU GLN ASN ARG VAL
SEQRES 7 A 327 VAL PHE GLN MET GLY THR SER ASP ALA GLU ARG ALA LEU
SEQRES 8 A 327 ALA VAL ALA ARG LEU VAL GLU ASN ASP VAL ALA GLY ILE
SEQRES 9 A 327 ASP VAL ASN MET GLY CYS PRO LYS GLN TYR SER THR LYS
SEQRES 10 A 327 GLY GLY MET GLY ALA ALA LEU LEU SER ASP PRO ASP LYS
SEQRES 11 A 327 ILE GLU LYS ILE LEU SER THR LEU VAL LYS GLY THR ARG
SEQRES 12 A 327 ARG PRO VAL THR CYS LYS ILE ARG ILE LEU PRO SER LEU
SEQRES 13 A 327 GLU ASP THR LEU SER LEU VAL LYS ARG ILE GLU ARG THR
SEQRES 14 A 327 GLY ILE ALA ALA ILE ALA VAL HIS GLY ARG LYS ARG GLU
SEQRES 15 A 327 GLU ARG PRO GLN HIS PRO VAL SER CYS GLU VAL ILE LYS
SEQRES 16 A 327 ALA ILE ALA ASP THR LEU SER ILE PRO VAL ILE ALA ASN
SEQRES 17 A 327 GLY GLY SER HIS ASP HIS ILE GLN GLN TYR SER ASP ILE
SEQRES 18 A 327 GLU ASP PHE ARG GLN ALA THR ALA ALA SER SER VAL MET
SEQRES 19 A 327 VAL ALA ARG ALA ALA MET TRP ASN PRO SER ILE PHE LEU
SEQRES 20 A 327 LYS GLU GLY LEU ARG PRO LEU GLU GLU VAL MET GLN LYS
SEQRES 21 A 327 TYR ILE ARG TYR ALA VAL GLN TYR ASP ASN HIS TYR THR
SEQRES 22 A 327 ASN THR LYS TYR CYS LEU CYS GLN MET LEU ARG GLU GLN
SEQRES 23 A 327 LEU GLU SER PRO GLN GLY ARG LEU LEU HIS ALA ALA LYS
SEQRES 24 A 327 SER SER ARG GLU ILE CYS GLU ALA PHE GLY LEU GLY ALA
SEQRES 25 A 327 PHE TYR GLU GLU THR THR GLN GLU LEU ASP ALA GLN GLN
SEQRES 26 A 327 ALA ARG
HET FMN A 401 31
HET SO4 A 402 5
HET SO4 A 403 5
HET SO4 A 404 5
HET GOL A 405 12
HET SO4 A 406 5
HETNAM FMN FLAVIN MONONUCLEOTIDE
HETNAM SO4 SULFATE ION
HETNAM GOL GLYCEROL
HETSYN FMN RIBOFLAVIN MONOPHOSPHATE
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 FMN C17 H21 N4 O9 P
FORMUL 3 SO4 4(O4 S 2-)
FORMUL 6 GOL C3 H8 O3
FORMUL 8 HOH *41(H2 O)
HELIX 1 AA1 THR A 24 TYR A 34 1 11
HELIX 2 AA2 ASP A 46 ILE A 50 1 5
HELIX 3 AA3 ASP A 92 GLU A 104 1 13
HELIX 4 AA4 ALA A 129 SER A 132 5 4
HELIX 5 AA5 ASP A 133 THR A 148 1 16
HELIX 6 AA6 SER A 161 ARG A 174 1 14
HELIX 7 AA7 SER A 196 LEU A 207 1 12
HELIX 8 AA8 TYR A 224 ALA A 235 1 12
HELIX 9 AA9 ALA A 242 ASN A 248 1 7
HELIX 10 AB1 PRO A 249 LEU A 253 5 5
HELIX 11 AB2 PRO A 259 TYR A 274 1 16
HELIX 12 AB3 HIS A 277 ARG A 290 1 14
HELIX 13 AB4 GLU A 291 GLU A 294 5 4
HELIX 14 AB5 SER A 295 ALA A 304 1 10
HELIX 15 AB6 SER A 306 PHE A 314 1 9
HELIX 16 AB7 LEU A 316 ASP A 328 1 13
SHEET 1 AA110 LEU A 44 ILE A 45 0
SHEET 2 AA110 VAL A 84 GLY A 89 1 O GLY A 89 N LEU A 44
SHEET 3 AA110 GLY A 109 MET A 114 1 O ASP A 111 N PHE A 86
SHEET 4 AA110 VAL A 152 ILE A 158 1 O THR A 153 N ILE A 110
SHEET 5 AA110 ALA A 179 LYS A 186 1 O HIS A 183 N ILE A 156
SHEET 6 AA110 VAL A 211 ASN A 214 1 O ILE A 212 N VAL A 182
SHEET 7 AA110 SER A 238 VAL A 241 1 O MET A 240 N ALA A 213
SHEET 8 AA110 HIS A 13 LEU A 16 1 N ILE A 15 O VAL A 241
SHEET 9 AA110 ILE A 38 TYR A 40 1 O ILE A 38 N LEU A 16
SHEET 10 AA110 VAL A 84 GLY A 89 1 O VAL A 85 N VAL A 39
SHEET 1 AA2 3 LYS A 53 ASN A 57 0
SHEET 2 AA2 3 THR A 62 VAL A 66 -1 O ASP A 64 N VAL A 55
SHEET 3 AA2 3 VAL A 72 THR A 76 -1 O VAL A 73 N PHE A 65
SITE 1 AC1 18 PRO A 18 MET A 19 VAL A 20 GLU A 43
SITE 2 AC1 18 GLN A 87 ASN A 113 LYS A 155 HIS A 183
SITE 3 AC1 18 ASN A 214 GLY A 215 GLY A 216 SER A 217
SITE 4 AC1 18 ALA A 242 ARG A 243 GOL A 405 SO4 A 406
SITE 5 AC1 18 HOH A 506 HOH A 519
SITE 1 AC2 4 ARG A 21 HIS A 277 THR A 279 ASN A 280
SITE 1 AC3 6 SER A 91 ARG A 95 GLY A 315 LEU A 316
SITE 2 AC3 6 GLY A 317 ALA A 318
SITE 1 AC4 2 ASN A 82 ARG A 83
SITE 1 AC5 7 VAL A 20 GLU A 43 ASN A 113 CYS A 116
SITE 2 AC5 7 PRO A 117 FMN A 401 SO4 A 406
SITE 1 AC6 6 GLY A 115 LYS A 155 ARG A 157 HIS A 183
SITE 2 AC6 6 FMN A 401 GOL A 405
CRYST1 72.080 84.110 144.350 90.00 90.00 90.00 I 2 2 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013873 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011889 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006928 0.00000