HEADER LIGASE 15-NOV-17 6EZD TITLE PYRROLYSYL-TRNA SYNTHETASE FROM CANDITATUS METHANOMETHYLOPHILUS ALVUS TITLE 2 (MMAPYLRS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRROLYSYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 6.1.1.26; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDATUS METHANOMETHYLOPHILUS ALVUS MX1201 SOURCE 3 1); SOURCE 4 ORGANISM_TAXID: 1236689; SOURCE 5 GENE: MMALV_11280; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PYRROLYSYL-TRNA SYNTHETASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR T.PAVKOV-KELLER,K.SCHWEIGER,K.GRUBER REVDAT 2 17-JAN-24 6EZD 1 REMARK REVDAT 1 12-DEC-18 6EZD 0 JRNL AUTH P.FLADISCHER,J.BLAMAUER,T.PAVKOV-KELLER,K.SCHWEIGER, JRNL AUTH 2 B.DARNHOFER,R.BIRNER-GRUENBERGER,K.GRUBER,B.WILTSCHI JRNL TITL A NEW ARCHAEAL PYRROLYSYL-TRNA SYNTHETASE/AMBER SUPPRESSOR JRNL TITL 2 TRNA PAIR FOR ORTHOGONAL PROTEIN TRANSLATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 49571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2479 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7930 - 6.2566 1.00 2847 150 0.1821 0.1804 REMARK 3 2 6.2566 - 4.9676 1.00 2728 144 0.1984 0.2023 REMARK 3 3 4.9676 - 4.3401 1.00 2705 143 0.1613 0.1950 REMARK 3 4 4.3401 - 3.9435 1.00 2689 141 0.1752 0.2128 REMARK 3 5 3.9435 - 3.6609 0.98 2610 138 0.2145 0.2585 REMARK 3 6 3.6609 - 3.4452 0.99 2667 140 0.2241 0.2790 REMARK 3 7 3.4452 - 3.2727 0.99 2647 140 0.2269 0.2978 REMARK 3 8 3.2727 - 3.1302 1.00 2648 139 0.2182 0.2417 REMARK 3 9 3.1302 - 3.0097 1.00 2650 139 0.2261 0.2701 REMARK 3 10 3.0097 - 2.9059 1.00 2684 142 0.2444 0.2882 REMARK 3 11 2.9059 - 2.8150 1.00 2640 139 0.2466 0.3009 REMARK 3 12 2.8150 - 2.7346 1.00 2642 139 0.2457 0.2747 REMARK 3 13 2.7346 - 2.6626 0.98 2578 135 0.2853 0.3356 REMARK 3 14 2.6626 - 2.5976 0.99 2648 139 0.2841 0.3560 REMARK 3 15 2.5976 - 2.5386 1.00 2594 137 0.2736 0.3282 REMARK 3 16 2.5386 - 2.4846 1.00 2677 141 0.2732 0.3236 REMARK 3 17 2.4846 - 2.4349 1.00 2624 138 0.2750 0.3517 REMARK 3 18 2.4349 - 2.3889 0.68 1814 95 0.2678 0.3368 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 8743 REMARK 3 ANGLE : 0.505 11792 REMARK 3 CHIRALITY : 0.039 1301 REMARK 3 PLANARITY : 0.003 1534 REMARK 3 DIHEDRAL : 7.055 5846 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EZD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200007498. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49665 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.66400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3DSQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.09 M (NANO3, NA2HPO4, (NH4)2SO4), REMARK 280 0.1 M TRIS (BASE), BICINE AND 5 MM MGCL2. 15-7MG/ML (IN 10 MM REMARK 280 HEPES-NA PH 7.4, 300 MM NACL), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 144.73550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 144.73550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.32100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.08850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.32100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.08850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 144.73550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.32100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.08850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 144.73550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.32100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.08850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 387 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 276 REMARK 465 SER A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 HIS A 282 REMARK 465 HIS A 283 REMARK 465 MET B 1 REMARK 465 GLY B 276 REMARK 465 SER B 277 REMARK 465 HIS B 278 REMARK 465 HIS B 279 REMARK 465 HIS B 280 REMARK 465 HIS B 281 REMARK 465 HIS B 282 REMARK 465 HIS B 283 REMARK 465 MET C 1 REMARK 465 LYS C 102 REMARK 465 PRO C 103 REMARK 465 GLY C 276 REMARK 465 SER C 277 REMARK 465 HIS C 278 REMARK 465 HIS C 279 REMARK 465 HIS C 280 REMARK 465 HIS C 281 REMARK 465 HIS C 282 REMARK 465 HIS C 283 REMARK 465 MET D 1 REMARK 465 ASP D 101 REMARK 465 LYS D 102 REMARK 465 SER D 277 REMARK 465 HIS D 278 REMARK 465 HIS D 279 REMARK 465 HIS D 280 REMARK 465 HIS D 281 REMARK 465 HIS D 282 REMARK 465 HIS D 283 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 361 O HOH D 364 1.84 REMARK 500 O ALA B 264 O HOH B 301 1.87 REMARK 500 O HOH D 387 O HOH D 389 1.89 REMARK 500 O ALA C 264 O HOH C 301 1.92 REMARK 500 O HOH A 341 O HOH A 362 1.93 REMARK 500 O HOH D 392 O HOH D 394 1.95 REMARK 500 O HIS C 233 O HOH C 302 1.98 REMARK 500 O HOH B 394 O HOH B 398 1.98 REMARK 500 OD1 ASP A 46 O HOH A 301 1.98 REMARK 500 O HOH B 341 O HOH B 384 2.00 REMARK 500 O VAL C 205 O HOH C 303 2.02 REMARK 500 NE2 GLN B 217 O HOH B 302 2.02 REMARK 500 OD1 ASP D 195 O HOH D 301 2.04 REMARK 500 OE2 GLU A 27 O HOH A 302 2.04 REMARK 500 O HOH B 374 O HOH B 385 2.05 REMARK 500 O HOH A 354 O HOH A 381 2.06 REMARK 500 OD1 ASN C 270 O HOH C 304 2.07 REMARK 500 OG1 THR C 251 O HOH C 305 2.09 REMARK 500 O ILE B 266 O HOH B 303 2.11 REMARK 500 O HOH D 344 O HOH D 356 2.12 REMARK 500 O ILE A 266 O HOH A 303 2.13 REMARK 500 O HOH C 334 O HOH C 373 2.14 REMARK 500 OE2 GLU D 161 O HOH D 302 2.14 REMARK 500 O ALA A 264 O HOH A 304 2.15 REMARK 500 OG SER C 155 O HOH C 306 2.15 REMARK 500 OD2 ASP A 131 O HOH A 305 2.16 REMARK 500 NH2 ARG A 133 O GLY A 138 2.16 REMARK 500 ND2 ASN B 182 O HOH B 304 2.16 REMARK 500 O HOH B 330 O HOH B 334 2.16 REMARK 500 O MET A 145 O HOH A 306 2.16 REMARK 500 O HOH A 382 O HOH C 376 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 320 O HOH D 375 1655 2.03 REMARK 500 O VAL A 25 N THR C 2 1545 2.13 REMARK 500 O HOH A 377 O HOH A 385 3557 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 112 -156.63 -144.97 REMARK 500 ASP A 175 37.87 -94.85 REMARK 500 ASN A 215 71.93 50.31 REMARK 500 ASP B 175 37.49 -99.31 REMARK 500 GLU B 208 146.91 -174.26 REMARK 500 ASP C 112 -157.00 -147.13 REMARK 500 HIS C 236 24.52 -140.04 REMARK 500 ASN D 275 146.12 -177.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 380 DISTANCE = 5.83 ANGSTROMS DBREF 6EZD A 1 275 UNP M9SC49 M9SC49_METAX 1 275 DBREF 6EZD B 1 275 UNP M9SC49 M9SC49_METAX 1 275 DBREF 6EZD C 1 275 UNP M9SC49 M9SC49_METAX 1 275 DBREF 6EZD D 1 275 UNP M9SC49 M9SC49_METAX 1 275 SEQADV 6EZD GLY A 276 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD SER A 277 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS A 278 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS A 279 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS A 280 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS A 281 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS A 282 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS A 283 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD GLY B 276 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD SER B 277 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS B 278 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS B 279 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS B 280 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS B 281 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS B 282 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS B 283 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD GLY C 276 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD SER C 277 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS C 278 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS C 279 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS C 280 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS C 281 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS C 282 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS C 283 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD GLY D 276 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD SER D 277 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS D 278 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS D 279 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS D 280 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS D 281 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS D 282 UNP M9SC49 EXPRESSION TAG SEQADV 6EZD HIS D 283 UNP M9SC49 EXPRESSION TAG SEQRES 1 A 283 MET THR VAL LYS TYR THR ASP ALA GLN ILE GLN ARG LEU SEQRES 2 A 283 ARG GLU TYR GLY ASN GLY THR TYR GLU GLN LYS VAL PHE SEQRES 3 A 283 GLU ASP LEU ALA SER ARG ASP ALA ALA PHE SER LYS GLU SEQRES 4 A 283 MET SER VAL ALA SER THR ASP ASN GLU LYS LYS ILE LYS SEQRES 5 A 283 GLY MET ILE ALA ASN PRO SER ARG HIS GLY LEU THR GLN SEQRES 6 A 283 LEU MET ASN ASP ILE ALA ASP ALA LEU VAL ALA GLU GLY SEQRES 7 A 283 PHE ILE GLU VAL ARG THR PRO ILE PHE ILE SER LYS ASP SEQRES 8 A 283 ALA LEU ALA ARG MET THR ILE THR GLU ASP LYS PRO LEU SEQRES 9 A 283 PHE LYS GLN VAL PHE TRP ILE ASP GLU LYS ARG ALA LEU SEQRES 10 A 283 ARG PRO MET LEU ALA PRO ASN LEU TYR SER VAL MET ARG SEQRES 11 A 283 ASP LEU ARG ASP HIS THR ASP GLY PRO VAL LYS ILE PHE SEQRES 12 A 283 GLU MET GLY SER CYS PHE ARG LYS GLU SER HIS SER GLY SEQRES 13 A 283 MET HIS LEU GLU GLU PHE THR MET LEU ASN LEU VAL ASP SEQRES 14 A 283 MET GLY PRO ARG GLY ASP ALA THR GLU VAL LEU LYS ASN SEQRES 15 A 283 TYR ILE SER VAL VAL MET LYS ALA ALA GLY LEU PRO ASP SEQRES 16 A 283 TYR ASP LEU VAL GLN GLU GLU SER ASP VAL TYR LYS GLU SEQRES 17 A 283 THR ILE ASP VAL GLU ILE ASN GLY GLN GLU VAL CYS SER SEQRES 18 A 283 ALA ALA VAL GLY PRO HIS TYR LEU ASP ALA ALA HIS ASP SEQRES 19 A 283 VAL HIS GLU PRO TRP SER GLY ALA GLY PHE GLY LEU GLU SEQRES 20 A 283 ARG LEU LEU THR ILE ARG GLU LYS TYR SER THR VAL LYS SEQRES 21 A 283 LYS GLY GLY ALA SER ILE SER TYR LEU ASN GLY ALA LYS SEQRES 22 A 283 ILE ASN GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 283 MET THR VAL LYS TYR THR ASP ALA GLN ILE GLN ARG LEU SEQRES 2 B 283 ARG GLU TYR GLY ASN GLY THR TYR GLU GLN LYS VAL PHE SEQRES 3 B 283 GLU ASP LEU ALA SER ARG ASP ALA ALA PHE SER LYS GLU SEQRES 4 B 283 MET SER VAL ALA SER THR ASP ASN GLU LYS LYS ILE LYS SEQRES 5 B 283 GLY MET ILE ALA ASN PRO SER ARG HIS GLY LEU THR GLN SEQRES 6 B 283 LEU MET ASN ASP ILE ALA ASP ALA LEU VAL ALA GLU GLY SEQRES 7 B 283 PHE ILE GLU VAL ARG THR PRO ILE PHE ILE SER LYS ASP SEQRES 8 B 283 ALA LEU ALA ARG MET THR ILE THR GLU ASP LYS PRO LEU SEQRES 9 B 283 PHE LYS GLN VAL PHE TRP ILE ASP GLU LYS ARG ALA LEU SEQRES 10 B 283 ARG PRO MET LEU ALA PRO ASN LEU TYR SER VAL MET ARG SEQRES 11 B 283 ASP LEU ARG ASP HIS THR ASP GLY PRO VAL LYS ILE PHE SEQRES 12 B 283 GLU MET GLY SER CYS PHE ARG LYS GLU SER HIS SER GLY SEQRES 13 B 283 MET HIS LEU GLU GLU PHE THR MET LEU ASN LEU VAL ASP SEQRES 14 B 283 MET GLY PRO ARG GLY ASP ALA THR GLU VAL LEU LYS ASN SEQRES 15 B 283 TYR ILE SER VAL VAL MET LYS ALA ALA GLY LEU PRO ASP SEQRES 16 B 283 TYR ASP LEU VAL GLN GLU GLU SER ASP VAL TYR LYS GLU SEQRES 17 B 283 THR ILE ASP VAL GLU ILE ASN GLY GLN GLU VAL CYS SER SEQRES 18 B 283 ALA ALA VAL GLY PRO HIS TYR LEU ASP ALA ALA HIS ASP SEQRES 19 B 283 VAL HIS GLU PRO TRP SER GLY ALA GLY PHE GLY LEU GLU SEQRES 20 B 283 ARG LEU LEU THR ILE ARG GLU LYS TYR SER THR VAL LYS SEQRES 21 B 283 LYS GLY GLY ALA SER ILE SER TYR LEU ASN GLY ALA LYS SEQRES 22 B 283 ILE ASN GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 C 283 MET THR VAL LYS TYR THR ASP ALA GLN ILE GLN ARG LEU SEQRES 2 C 283 ARG GLU TYR GLY ASN GLY THR TYR GLU GLN LYS VAL PHE SEQRES 3 C 283 GLU ASP LEU ALA SER ARG ASP ALA ALA PHE SER LYS GLU SEQRES 4 C 283 MET SER VAL ALA SER THR ASP ASN GLU LYS LYS ILE LYS SEQRES 5 C 283 GLY MET ILE ALA ASN PRO SER ARG HIS GLY LEU THR GLN SEQRES 6 C 283 LEU MET ASN ASP ILE ALA ASP ALA LEU VAL ALA GLU GLY SEQRES 7 C 283 PHE ILE GLU VAL ARG THR PRO ILE PHE ILE SER LYS ASP SEQRES 8 C 283 ALA LEU ALA ARG MET THR ILE THR GLU ASP LYS PRO LEU SEQRES 9 C 283 PHE LYS GLN VAL PHE TRP ILE ASP GLU LYS ARG ALA LEU SEQRES 10 C 283 ARG PRO MET LEU ALA PRO ASN LEU TYR SER VAL MET ARG SEQRES 11 C 283 ASP LEU ARG ASP HIS THR ASP GLY PRO VAL LYS ILE PHE SEQRES 12 C 283 GLU MET GLY SER CYS PHE ARG LYS GLU SER HIS SER GLY SEQRES 13 C 283 MET HIS LEU GLU GLU PHE THR MET LEU ASN LEU VAL ASP SEQRES 14 C 283 MET GLY PRO ARG GLY ASP ALA THR GLU VAL LEU LYS ASN SEQRES 15 C 283 TYR ILE SER VAL VAL MET LYS ALA ALA GLY LEU PRO ASP SEQRES 16 C 283 TYR ASP LEU VAL GLN GLU GLU SER ASP VAL TYR LYS GLU SEQRES 17 C 283 THR ILE ASP VAL GLU ILE ASN GLY GLN GLU VAL CYS SER SEQRES 18 C 283 ALA ALA VAL GLY PRO HIS TYR LEU ASP ALA ALA HIS ASP SEQRES 19 C 283 VAL HIS GLU PRO TRP SER GLY ALA GLY PHE GLY LEU GLU SEQRES 20 C 283 ARG LEU LEU THR ILE ARG GLU LYS TYR SER THR VAL LYS SEQRES 21 C 283 LYS GLY GLY ALA SER ILE SER TYR LEU ASN GLY ALA LYS SEQRES 22 C 283 ILE ASN GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 D 283 MET THR VAL LYS TYR THR ASP ALA GLN ILE GLN ARG LEU SEQRES 2 D 283 ARG GLU TYR GLY ASN GLY THR TYR GLU GLN LYS VAL PHE SEQRES 3 D 283 GLU ASP LEU ALA SER ARG ASP ALA ALA PHE SER LYS GLU SEQRES 4 D 283 MET SER VAL ALA SER THR ASP ASN GLU LYS LYS ILE LYS SEQRES 5 D 283 GLY MET ILE ALA ASN PRO SER ARG HIS GLY LEU THR GLN SEQRES 6 D 283 LEU MET ASN ASP ILE ALA ASP ALA LEU VAL ALA GLU GLY SEQRES 7 D 283 PHE ILE GLU VAL ARG THR PRO ILE PHE ILE SER LYS ASP SEQRES 8 D 283 ALA LEU ALA ARG MET THR ILE THR GLU ASP LYS PRO LEU SEQRES 9 D 283 PHE LYS GLN VAL PHE TRP ILE ASP GLU LYS ARG ALA LEU SEQRES 10 D 283 ARG PRO MET LEU ALA PRO ASN LEU TYR SER VAL MET ARG SEQRES 11 D 283 ASP LEU ARG ASP HIS THR ASP GLY PRO VAL LYS ILE PHE SEQRES 12 D 283 GLU MET GLY SER CYS PHE ARG LYS GLU SER HIS SER GLY SEQRES 13 D 283 MET HIS LEU GLU GLU PHE THR MET LEU ASN LEU VAL ASP SEQRES 14 D 283 MET GLY PRO ARG GLY ASP ALA THR GLU VAL LEU LYS ASN SEQRES 15 D 283 TYR ILE SER VAL VAL MET LYS ALA ALA GLY LEU PRO ASP SEQRES 16 D 283 TYR ASP LEU VAL GLN GLU GLU SER ASP VAL TYR LYS GLU SEQRES 17 D 283 THR ILE ASP VAL GLU ILE ASN GLY GLN GLU VAL CYS SER SEQRES 18 D 283 ALA ALA VAL GLY PRO HIS TYR LEU ASP ALA ALA HIS ASP SEQRES 19 D 283 VAL HIS GLU PRO TRP SER GLY ALA GLY PHE GLY LEU GLU SEQRES 20 D 283 ARG LEU LEU THR ILE ARG GLU LYS TYR SER THR VAL LYS SEQRES 21 D 283 LYS GLY GLY ALA SER ILE SER TYR LEU ASN GLY ALA LYS SEQRES 22 D 283 ILE ASN GLY SER HIS HIS HIS HIS HIS HIS FORMUL 5 HOH *364(H2 O) HELIX 1 AA1 THR A 6 GLY A 17 1 12 HELIX 2 AA2 ASP A 28 ASN A 57 1 30 HELIX 3 AA3 HIS A 61 GLU A 77 1 17 HELIX 4 AA4 LYS A 90 MET A 96 1 7 HELIX 5 AA5 LYS A 102 VAL A 108 5 7 HELIX 6 AA6 LEU A 121 ASP A 134 1 14 HELIX 7 AA7 LYS A 151 GLY A 156 1 6 HELIX 8 AA8 ASP A 175 GLY A 192 1 18 HELIX 9 AA9 ASP A 230 ASP A 234 5 5 HELIX 10 AB1 LEU A 246 GLU A 254 1 9 HELIX 11 AB2 THR B 6 GLY B 17 1 12 HELIX 12 AB3 ASP B 28 ASN B 57 1 30 HELIX 13 AB4 HIS B 61 GLU B 77 1 17 HELIX 14 AB5 LYS B 90 MET B 96 1 7 HELIX 15 AB6 LYS B 102 VAL B 108 5 7 HELIX 16 AB7 LEU B 121 ASP B 134 1 14 HELIX 17 AB8 LYS B 151 GLY B 156 1 6 HELIX 18 AB9 ASP B 175 ALA B 191 1 17 HELIX 19 AC1 ASP B 230 ASP B 234 5 5 HELIX 20 AC2 LEU B 246 LYS B 255 1 10 HELIX 21 AC3 THR C 6 GLY C 17 1 12 HELIX 22 AC4 ASP C 28 ASN C 57 1 30 HELIX 23 AC5 HIS C 61 GLU C 77 1 17 HELIX 24 AC6 LYS C 90 MET C 96 1 7 HELIX 25 AC7 LEU C 104 VAL C 108 5 5 HELIX 26 AC8 LEU C 121 ASP C 134 1 14 HELIX 27 AC9 ASP C 175 ALA C 191 1 17 HELIX 28 AD1 TYR C 228 HIS C 233 1 6 HELIX 29 AD2 LEU C 246 LYS C 255 1 10 HELIX 30 AD3 THR D 6 GLY D 17 1 12 HELIX 31 AD4 ASP D 28 ASN D 57 1 30 HELIX 32 AD5 HIS D 61 GLU D 77 1 17 HELIX 33 AD6 LYS D 90 MET D 96 1 7 HELIX 34 AD7 PRO D 103 VAL D 108 5 6 HELIX 35 AD8 LEU D 121 ASP D 134 1 14 HELIX 36 AD9 ASP D 175 ALA D 191 1 17 HELIX 37 AE1 HIS D 227 HIS D 233 1 7 HELIX 38 AE2 LEU D 246 LYS D 255 1 10 SHEET 1 AA1 7 ILE A 80 GLU A 81 0 SHEET 2 AA1 7 VAL A 140 PHE A 149 1 O LYS A 141 N ILE A 80 SHEET 3 AA1 7 GLU A 161 MET A 170 -1 O PHE A 162 N CYS A 148 SHEET 4 AA1 7 TRP A 239 GLY A 245 -1 O PHE A 244 N LEU A 165 SHEET 5 AA1 7 GLU A 218 VAL A 224 -1 N ALA A 223 O GLY A 241 SHEET 6 AA1 7 GLU A 208 GLU A 213 -1 N ILE A 210 O ALA A 222 SHEET 7 AA1 7 ASP A 197 GLU A 201 -1 N VAL A 199 O ASP A 211 SHEET 1 AA2 2 PHE A 87 SER A 89 0 SHEET 2 AA2 2 ARG A 115 LEU A 117 -1 O ALA A 116 N ILE A 88 SHEET 1 AA3 2 TYR A 268 LEU A 269 0 SHEET 2 AA3 2 ALA A 272 LYS A 273 -1 O ALA A 272 N LEU A 269 SHEET 1 AA4 2 VAL B 3 LYS B 4 0 SHEET 2 AA4 2 VAL B 25 PHE B 26 -1 O PHE B 26 N VAL B 3 SHEET 1 AA5 7 ILE B 80 GLU B 81 0 SHEET 2 AA5 7 VAL B 140 PHE B 149 1 O LYS B 141 N ILE B 80 SHEET 3 AA5 7 GLU B 161 MET B 170 -1 O PHE B 162 N CYS B 148 SHEET 4 AA5 7 TRP B 239 GLY B 245 -1 O SER B 240 N ASP B 169 SHEET 5 AA5 7 GLN B 217 VAL B 224 -1 N ALA B 223 O GLY B 241 SHEET 6 AA5 7 GLU B 208 ILE B 214 -1 N ILE B 210 O ALA B 222 SHEET 7 AA5 7 ASP B 197 GLU B 201 -1 N ASP B 197 O GLU B 213 SHEET 1 AA6 3 PHE B 87 SER B 89 0 SHEET 2 AA6 3 ARG B 115 LEU B 117 -1 O ALA B 116 N ILE B 88 SHEET 3 AA6 3 PHE B 109 TRP B 110 -1 N PHE B 109 O LEU B 117 SHEET 1 AA7 2 TYR B 268 LEU B 269 0 SHEET 2 AA7 2 ALA B 272 LYS B 273 -1 O ALA B 272 N LEU B 269 SHEET 1 AA8 7 ILE C 80 GLU C 81 0 SHEET 2 AA8 7 VAL C 140 PHE C 149 1 O LYS C 141 N ILE C 80 SHEET 3 AA8 7 GLU C 161 MET C 170 -1 O MET C 170 N VAL C 140 SHEET 4 AA8 7 TRP C 239 GLY C 245 -1 O PHE C 244 N LEU C 165 SHEET 5 AA8 7 GLN C 217 VAL C 224 -1 N ALA C 223 O GLY C 241 SHEET 6 AA8 7 GLU C 208 ILE C 214 -1 N ILE C 210 O ALA C 222 SHEET 7 AA8 7 ASP C 197 GLU C 201 -1 N ASP C 197 O GLU C 213 SHEET 1 AA9 2 PHE C 87 SER C 89 0 SHEET 2 AA9 2 ARG C 115 LEU C 117 -1 O ALA C 116 N ILE C 88 SHEET 1 AB1 2 TYR C 268 LEU C 269 0 SHEET 2 AB1 2 ALA C 272 LYS C 273 -1 O ALA C 272 N LEU C 269 SHEET 1 AB2 2 VAL D 3 LYS D 4 0 SHEET 2 AB2 2 VAL D 25 PHE D 26 -1 O PHE D 26 N VAL D 3 SHEET 1 AB3 7 ILE D 80 GLU D 81 0 SHEET 2 AB3 7 VAL D 140 PHE D 149 1 O LYS D 141 N ILE D 80 SHEET 3 AB3 7 GLU D 161 MET D 170 -1 O PHE D 162 N CYS D 148 SHEET 4 AB3 7 TRP D 239 GLY D 245 -1 O PHE D 244 N LEU D 165 SHEET 5 AB3 7 GLN D 217 VAL D 224 -1 N ALA D 223 O GLY D 241 SHEET 6 AB3 7 GLU D 208 ILE D 214 -1 N VAL D 212 O VAL D 219 SHEET 7 AB3 7 ASP D 197 GLU D 202 -1 N ASP D 197 O GLU D 213 SHEET 1 AB4 2 PHE D 87 SER D 89 0 SHEET 2 AB4 2 ARG D 115 LEU D 117 -1 O ALA D 116 N ILE D 88 SHEET 1 AB5 2 TYR D 268 LEU D 269 0 SHEET 2 AB5 2 ALA D 272 LYS D 273 -1 O ALA D 272 N LEU D 269 CISPEP 1 GLY A 225 PRO A 226 0 5.39 CISPEP 2 GLY B 225 PRO B 226 0 1.31 CISPEP 3 GLY C 225 PRO C 226 0 -1.62 CISPEP 4 GLY D 225 PRO D 226 0 0.14 CRYST1 92.642 94.177 289.471 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010794 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003455 0.00000