HEADER TRANSLATION 15-NOV-17 6EZE TITLE THE OPEN CONFORMATION OF E.COLI ELONGATION FACTOR TU IN COMPLEX WITH TITLE 2 GDPNP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR TU 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EF-TU 2,BACTERIOPHAGE Q BETA RNA-DIRECTED RNA POLYMERASE COMPND 5 SUBUNIT III,P-43 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333 KEYWDS ELONGATION FACTOR G-PROTEIN, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR J.S.JOHANSEN,M.BLAISE,S.S.THIRUP REVDAT 3 17-JAN-24 6EZE 1 LINK REVDAT 2 03-OCT-18 6EZE 1 JRNL REVDAT 1 22-AUG-18 6EZE 0 JRNL AUTH J.S.JOHANSEN,D.KAVALIAUSKAS,S.H.PFEIL,M.BLAISE, JRNL AUTH 2 B.S.COOPERMAN,Y.E.GOLDMAN,S.S.THIRUP,C.R.KNUDSEN JRNL TITL E. COLI ELONGATION FACTOR TU BOUND TO A GTP ANALOGUE JRNL TITL 2 DISPLAYS AN OPEN CONFORMATION EQUIVALENT TO THE GDP-BOUND JRNL TITL 3 FORM. JRNL REF NUCLEIC ACIDS RES. V. 46 8641 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 30107565 JRNL DOI 10.1093/NAR/GKY697 REMARK 2 REMARK 2 RESOLUTION. 2.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2614: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 36410 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.680 REMARK 3 FREE R VALUE TEST SET COUNT : 2069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6994 - 6.0753 0.97 2433 147 0.1730 0.1991 REMARK 3 2 6.0753 - 4.8289 0.99 2387 143 0.1524 0.1830 REMARK 3 3 4.8289 - 4.2205 0.99 2346 141 0.1189 0.1513 REMARK 3 4 4.2205 - 3.8355 0.99 2314 141 0.1459 0.1817 REMARK 3 5 3.8355 - 3.5610 0.98 2295 137 0.1599 0.1701 REMARK 3 6 3.5610 - 3.3514 0.99 2280 138 0.1659 0.2214 REMARK 3 7 3.3514 - 3.1837 0.99 2302 139 0.1733 0.2162 REMARK 3 8 3.1837 - 3.0453 0.99 2274 136 0.1769 0.2276 REMARK 3 9 3.0453 - 2.9282 0.99 2261 137 0.2070 0.2713 REMARK 3 10 2.9282 - 2.8272 0.98 2287 138 0.1955 0.2593 REMARK 3 11 2.8272 - 2.7389 0.98 2235 134 0.1894 0.2695 REMARK 3 12 2.7389 - 2.6606 1.00 2282 138 0.1948 0.2414 REMARK 3 13 2.6606 - 2.5906 0.98 2202 133 0.2167 0.2565 REMARK 3 14 2.5906 - 2.5275 0.98 2270 136 0.2505 0.3248 REMARK 3 15 2.5275 - 2.4700 0.95 2173 131 0.3111 0.3307 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6189 REMARK 3 ANGLE : 0.590 8380 REMARK 3 CHIRALITY : 0.045 948 REMARK 3 PLANARITY : 0.004 1074 REMARK 3 DIHEDRAL : 9.078 3699 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.3277 40.3282 -15.9735 REMARK 3 T TENSOR REMARK 3 T11: 0.1617 T22: 0.1850 REMARK 3 T33: 0.1469 T12: -0.0004 REMARK 3 T13: -0.0014 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 3.3083 L22: 3.7717 REMARK 3 L33: 2.2856 L12: -0.1662 REMARK 3 L13: 0.3540 L23: -0.1032 REMARK 3 S TENSOR REMARK 3 S11: -0.0960 S12: -0.0384 S13: -0.0517 REMARK 3 S21: -0.0179 S22: 0.0284 S23: 0.1910 REMARK 3 S31: 0.0265 S32: -0.1410 S33: 0.0691 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 300 THROUGH 393 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0871 57.2209 -0.3497 REMARK 3 T TENSOR REMARK 3 T11: 0.2330 T22: 0.1860 REMARK 3 T33: 0.2503 T12: 0.0627 REMARK 3 T13: 0.0083 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 4.8405 L22: 4.3726 REMARK 3 L33: 7.0072 L12: -0.4721 REMARK 3 L13: 2.0520 L23: -0.4297 REMARK 3 S TENSOR REMARK 3 S11: 0.2409 S12: 0.3083 S13: 0.1730 REMARK 3 S21: -0.4066 S22: -0.1635 S23: 0.4775 REMARK 3 S31: -0.1986 S32: -0.2625 S33: -0.0635 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4443 18.9674 -11.0275 REMARK 3 T TENSOR REMARK 3 T11: 0.2145 T22: 0.2026 REMARK 3 T33: 0.2500 T12: 0.0096 REMARK 3 T13: 0.0055 T23: -0.0494 REMARK 3 L TENSOR REMARK 3 L11: 3.2748 L22: 3.0589 REMARK 3 L33: 2.0565 L12: -1.0100 REMARK 3 L13: 0.4779 L23: -0.6617 REMARK 3 S TENSOR REMARK 3 S11: 0.0712 S12: 0.3386 S13: -0.3163 REMARK 3 S21: -0.1326 S22: -0.0664 S23: 0.1302 REMARK 3 S31: 0.1198 S32: 0.1470 S33: 0.0067 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 199 THROUGH 299) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2091 33.1694 24.8704 REMARK 3 T TENSOR REMARK 3 T11: 0.4287 T22: 0.3528 REMARK 3 T33: 0.2920 T12: -0.0831 REMARK 3 T13: 0.0932 T23: -0.0414 REMARK 3 L TENSOR REMARK 3 L11: 2.2839 L22: 3.8024 REMARK 3 L33: 0.4932 L12: 1.2779 REMARK 3 L13: 0.5004 L23: 1.0987 REMARK 3 S TENSOR REMARK 3 S11: 0.0610 S12: -0.5205 S13: 0.1391 REMARK 3 S21: 0.6266 S22: -0.2687 S23: 0.4512 REMARK 3 S31: 0.1801 S32: -0.1960 S33: 0.1694 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 300 THROUGH 393 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5193 13.0228 11.0179 REMARK 3 T TENSOR REMARK 3 T11: 0.3491 T22: 0.2386 REMARK 3 T33: 0.3697 T12: 0.0467 REMARK 3 T13: -0.0920 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 4.0583 L22: 6.2182 REMARK 3 L33: 5.0669 L12: -1.3845 REMARK 3 L13: -1.1498 L23: 0.5406 REMARK 3 S TENSOR REMARK 3 S11: -0.0224 S12: -0.1275 S13: -0.3682 REMARK 3 S21: 0.4370 S22: 0.0436 S23: -0.4445 REMARK 3 S31: 0.5578 S32: 0.5087 S33: -0.0277 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.2873 46.7751 21.6577 REMARK 3 T TENSOR REMARK 3 T11: 0.2823 T22: 0.2693 REMARK 3 T33: 0.1628 T12: -0.0136 REMARK 3 T13: -0.0268 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 3.0399 L22: 2.2133 REMARK 3 L33: 3.4563 L12: -0.1527 REMARK 3 L13: -0.9804 L23: -0.9804 REMARK 3 S TENSOR REMARK 3 S11: -0.1016 S12: -0.4699 S13: 0.0334 REMARK 3 S21: 0.2675 S22: 0.0784 S23: -0.1160 REMARK 3 S31: 0.1462 S32: 0.2591 S33: 0.0265 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EZE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200007499. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0379 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36491 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.470 REMARK 200 RESOLUTION RANGE LOW (A) : 29.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.76300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1EFC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN KONC. 8 MG/ML IN 30 MM KCL, REMARK 280 20MM HEPES PH 7.5,5MM MGCL2, 1MM DTT 1 UL PROTEIN SAMPLE MIXED REMARK 280 WITH 1UL RESERVOIR. RESERVOIR: 2M AMMONIUM SULFATE 100 MM HEPES REMARK 280 PH 7.5 2% (V/V) PEG 400 1MM DTT AND STREAK SEEDED., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.62150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 121.79450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.62150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 121.79450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 SER A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 PHE A 5 REMARK 465 GLU A 6 REMARK 465 ARG A 7 REMARK 465 MET B 0 REMARK 465 SER B 1 REMARK 465 LYS B 2 REMARK 465 GLU B 3 REMARK 465 LYS B 4 REMARK 465 PHE B 5 REMARK 465 GLU B 6 REMARK 465 ARG B 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 58 77.21 -159.63 REMARK 500 ARG A 223 -148.24 54.84 REMARK 500 ILE A 247 -56.76 67.13 REMARK 500 PHE A 261 -109.38 55.86 REMARK 500 PHE A 323 -164.40 -126.00 REMARK 500 ARG A 333 -64.82 63.34 REMARK 500 LYS A 390 118.95 -161.49 REMARK 500 ARG B 58 72.31 60.46 REMARK 500 ILE B 247 -57.11 67.10 REMARK 500 PHE B 261 -111.14 56.20 REMARK 500 PHE B 323 -163.79 -125.92 REMARK 500 ARG B 333 -64.82 63.17 REMARK 500 LYS B 390 119.04 -161.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 25 OG1 REMARK 620 2 GNP A 401 O3G 175.0 REMARK 620 3 GNP A 401 O2B 93.1 91.7 REMARK 620 4 HOH A 511 O 86.5 93.8 101.8 REMARK 620 5 HOH A 515 O 84.0 95.5 81.7 170.0 REMARK 620 6 HOH A 517 O 78.2 96.8 164.1 91.1 84.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 25 OG1 REMARK 620 2 GNP B 401 O3G 173.7 REMARK 620 3 GNP B 401 O1B 94.2 91.7 REMARK 620 4 HOH B 510 O 85.1 93.5 81.3 REMARK 620 5 HOH B 528 O 85.9 95.2 102.0 170.6 REMARK 620 6 HOH B 555 O 85.8 87.9 158.8 77.7 99.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 408 DBREF 6EZE A 0 393 UNP P0CE48 EFTU2_ECOLI 1 394 DBREF 6EZE B 0 393 UNP P0CE48 EFTU2_ECOLI 1 394 SEQRES 1 A 394 MET SER LYS GLU LYS PHE GLU ARG THR LYS PRO HIS VAL SEQRES 2 A 394 ASN VAL GLY THR ILE GLY HIS VAL ASP HIS GLY LYS THR SEQRES 3 A 394 THR LEU THR ALA ALA ILE THR THR VAL LEU ALA LYS THR SEQRES 4 A 394 TYR GLY GLY ALA ALA ARG ALA PHE ASP GLN ILE ASP ASN SEQRES 5 A 394 ALA PRO GLU GLU LYS ALA ARG GLY ILE THR ILE ASN THR SEQRES 6 A 394 SER HIS VAL GLU TYR ASP THR PRO THR ARG HIS TYR ALA SEQRES 7 A 394 HIS VAL ASP CYS PRO GLY HIS ALA ASP TYR VAL LYS ASN SEQRES 8 A 394 MET ILE THR GLY ALA ALA GLN MET ASP GLY ALA ILE LEU SEQRES 9 A 394 VAL VAL ALA ALA THR ASP GLY PRO MET PRO GLN THR ARG SEQRES 10 A 394 GLU HIS ILE LEU LEU GLY ARG GLN VAL GLY VAL PRO TYR SEQRES 11 A 394 ILE ILE VAL PHE LEU ASN LYS CYS ASP MET VAL ASP ASP SEQRES 12 A 394 GLU GLU LEU LEU GLU LEU VAL GLU MET GLU VAL ARG GLU SEQRES 13 A 394 LEU LEU SER GLN TYR ASP PHE PRO GLY ASP ASP THR PRO SEQRES 14 A 394 ILE VAL ARG GLY SER ALA LEU LYS ALA LEU GLU GLY ASP SEQRES 15 A 394 ALA GLU TRP GLU ALA LYS ILE LEU GLU LEU ALA GLY PHE SEQRES 16 A 394 LEU ASP SER TYR ILE PRO GLU PRO GLU ARG ALA ILE ASP SEQRES 17 A 394 LYS PRO PHE LEU LEU PRO ILE GLU ASP VAL PHE SER ILE SEQRES 18 A 394 SER GLY ARG GLY THR VAL VAL THR GLY ARG VAL GLU ARG SEQRES 19 A 394 GLY ILE ILE LYS VAL GLY GLU GLU VAL GLU ILE VAL GLY SEQRES 20 A 394 ILE LYS GLU THR GLN LYS SER THR CYS THR GLY VAL GLU SEQRES 21 A 394 MET PHE ARG LYS LEU LEU ASP GLU GLY ARG ALA GLY GLU SEQRES 22 A 394 ASN VAL GLY VAL LEU LEU ARG GLY ILE LYS ARG GLU GLU SEQRES 23 A 394 ILE GLU ARG GLY GLN VAL LEU ALA LYS PRO GLY THR ILE SEQRES 24 A 394 LYS PRO HIS THR LYS PHE GLU SER GLU VAL TYR ILE LEU SEQRES 25 A 394 SER LYS ASP GLU GLY GLY ARG HIS THR PRO PHE PHE LYS SEQRES 26 A 394 GLY TYR ARG PRO GLN PHE TYR PHE ARG THR THR ASP VAL SEQRES 27 A 394 THR GLY THR ILE GLU LEU PRO GLU GLY VAL GLU MET VAL SEQRES 28 A 394 MET PRO GLY ASP ASN ILE LYS MET VAL VAL THR LEU ILE SEQRES 29 A 394 HIS PRO ILE ALA MET ASP ASP GLY LEU ARG PHE ALA ILE SEQRES 30 A 394 ARG GLU GLY GLY ARG THR VAL GLY ALA GLY VAL VAL ALA SEQRES 31 A 394 LYS VAL LEU SER SEQRES 1 B 394 MET SER LYS GLU LYS PHE GLU ARG THR LYS PRO HIS VAL SEQRES 2 B 394 ASN VAL GLY THR ILE GLY HIS VAL ASP HIS GLY LYS THR SEQRES 3 B 394 THR LEU THR ALA ALA ILE THR THR VAL LEU ALA LYS THR SEQRES 4 B 394 TYR GLY GLY ALA ALA ARG ALA PHE ASP GLN ILE ASP ASN SEQRES 5 B 394 ALA PRO GLU GLU LYS ALA ARG GLY ILE THR ILE ASN THR SEQRES 6 B 394 SER HIS VAL GLU TYR ASP THR PRO THR ARG HIS TYR ALA SEQRES 7 B 394 HIS VAL ASP CYS PRO GLY HIS ALA ASP TYR VAL LYS ASN SEQRES 8 B 394 MET ILE THR GLY ALA ALA GLN MET ASP GLY ALA ILE LEU SEQRES 9 B 394 VAL VAL ALA ALA THR ASP GLY PRO MET PRO GLN THR ARG SEQRES 10 B 394 GLU HIS ILE LEU LEU GLY ARG GLN VAL GLY VAL PRO TYR SEQRES 11 B 394 ILE ILE VAL PHE LEU ASN LYS CYS ASP MET VAL ASP ASP SEQRES 12 B 394 GLU GLU LEU LEU GLU LEU VAL GLU MET GLU VAL ARG GLU SEQRES 13 B 394 LEU LEU SER GLN TYR ASP PHE PRO GLY ASP ASP THR PRO SEQRES 14 B 394 ILE VAL ARG GLY SER ALA LEU LYS ALA LEU GLU GLY ASP SEQRES 15 B 394 ALA GLU TRP GLU ALA LYS ILE LEU GLU LEU ALA GLY PHE SEQRES 16 B 394 LEU ASP SER TYR ILE PRO GLU PRO GLU ARG ALA ILE ASP SEQRES 17 B 394 LYS PRO PHE LEU LEU PRO ILE GLU ASP VAL PHE SER ILE SEQRES 18 B 394 SER GLY ARG GLY THR VAL VAL THR GLY ARG VAL GLU ARG SEQRES 19 B 394 GLY ILE ILE LYS VAL GLY GLU GLU VAL GLU ILE VAL GLY SEQRES 20 B 394 ILE LYS GLU THR GLN LYS SER THR CYS THR GLY VAL GLU SEQRES 21 B 394 MET PHE ARG LYS LEU LEU ASP GLU GLY ARG ALA GLY GLU SEQRES 22 B 394 ASN VAL GLY VAL LEU LEU ARG GLY ILE LYS ARG GLU GLU SEQRES 23 B 394 ILE GLU ARG GLY GLN VAL LEU ALA LYS PRO GLY THR ILE SEQRES 24 B 394 LYS PRO HIS THR LYS PHE GLU SER GLU VAL TYR ILE LEU SEQRES 25 B 394 SER LYS ASP GLU GLY GLY ARG HIS THR PRO PHE PHE LYS SEQRES 26 B 394 GLY TYR ARG PRO GLN PHE TYR PHE ARG THR THR ASP VAL SEQRES 27 B 394 THR GLY THR ILE GLU LEU PRO GLU GLY VAL GLU MET VAL SEQRES 28 B 394 MET PRO GLY ASP ASN ILE LYS MET VAL VAL THR LEU ILE SEQRES 29 B 394 HIS PRO ILE ALA MET ASP ASP GLY LEU ARG PHE ALA ILE SEQRES 30 B 394 ARG GLU GLY GLY ARG THR VAL GLY ALA GLY VAL VAL ALA SEQRES 31 B 394 LYS VAL LEU SER HET GNP A 401 32 HET MG A 402 1 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET SO4 A 406 5 HET SO4 A 407 5 HET PEG A 408 7 HET PEG A 409 7 HET PEG A 410 7 HET GNP B 401 32 HET MG B 402 1 HET GOL B 403 6 HET GOL B 404 6 HET GOL B 405 6 HET GOL B 406 6 HET SO4 B 407 5 HET SO4 B 408 5 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GNP 2(C10 H17 N6 O13 P3) FORMUL 4 MG 2(MG 2+) FORMUL 5 GOL 7(C3 H8 O3) FORMUL 8 SO4 4(O4 S 2-) FORMUL 10 PEG 3(C4 H10 O3) FORMUL 21 HOH *257(H2 O) HELIX 1 AA1 GLY A 23 GLY A 40 1 18 HELIX 2 AA2 ALA A 45 ASN A 51 1 7 HELIX 3 AA3 GLY A 83 GLY A 94 1 12 HELIX 4 AA4 MET A 112 GLY A 126 1 15 HELIX 5 AA5 ASP A 142 TYR A 160 1 19 HELIX 6 AA6 PRO A 163 THR A 167 5 5 HELIX 7 AA7 SER A 173 GLU A 179 1 7 HELIX 8 AA8 ASP A 181 ILE A 199 1 19 HELIX 9 AA9 ARG A 204 LYS A 208 5 5 HELIX 10 AB1 LYS A 282 ILE A 286 5 5 HELIX 11 AB2 GLY B 23 GLY B 40 1 18 HELIX 12 AB3 ALA B 45 ASN B 51 1 7 HELIX 13 AB4 GLY B 83 GLY B 94 1 12 HELIX 14 AB5 MET B 112 GLY B 126 1 15 HELIX 15 AB6 LYS B 136 VAL B 140 5 5 HELIX 16 AB7 ASP B 142 TYR B 160 1 19 HELIX 17 AB8 PRO B 163 THR B 167 5 5 HELIX 18 AB9 SER B 173 GLU B 179 1 7 HELIX 19 AC1 ASP B 181 ILE B 199 1 19 HELIX 20 AC2 ARG B 204 LYS B 208 5 5 HELIX 21 AC3 LYS B 282 ILE B 286 5 5 SHEET 1 AA1 6 SER A 65 ASP A 70 0 SHEET 2 AA1 6 HIS A 75 ASP A 80 -1 O TYR A 76 N TYR A 69 SHEET 3 AA1 6 HIS A 11 GLY A 18 1 N VAL A 14 O ALA A 77 SHEET 4 AA1 6 ALA A 101 ALA A 106 1 O ILE A 102 N GLY A 15 SHEET 5 AA1 6 ILE A 130 ASN A 135 1 O ILE A 131 N LEU A 103 SHEET 6 AA1 6 ILE A 169 ARG A 171 1 O VAL A 170 N LEU A 134 SHEET 1 AA2 2 GLU A 54 LYS A 56 0 SHEET 2 AA2 2 THR A 61 ASN A 63 -1 O ILE A 62 N GLU A 55 SHEET 1 AA3 7 LEU A 211 PRO A 213 0 SHEET 2 AA3 7 VAL A 291 ALA A 293 -1 O LEU A 292 N LEU A 212 SHEET 3 AA3 7 GLU A 241 VAL A 245 -1 N GLU A 243 O ALA A 293 SHEET 4 AA3 7 GLN A 251 MET A 260 -1 O SER A 253 N VAL A 242 SHEET 5 AA3 7 ASN A 273 LEU A 278 -1 O LEU A 277 N GLY A 257 SHEET 6 AA3 7 THR A 225 ARG A 230 -1 N VAL A 227 O VAL A 276 SHEET 7 AA3 7 ASP A 216 SER A 219 -1 N PHE A 218 O VAL A 226 SHEET 1 AA4 5 LEU A 211 PRO A 213 0 SHEET 2 AA4 5 VAL A 291 ALA A 293 -1 O LEU A 292 N LEU A 212 SHEET 3 AA4 5 GLU A 241 VAL A 245 -1 N GLU A 243 O ALA A 293 SHEET 4 AA4 5 GLN A 251 MET A 260 -1 O SER A 253 N VAL A 242 SHEET 5 AA4 5 LYS A 263 LEU A 265 -1 O LEU A 265 N VAL A 258 SHEET 1 AA5 2 ILE A 235 LYS A 237 0 SHEET 2 AA5 2 GLU A 267 ARG A 269 -1 O GLY A 268 N ILE A 236 SHEET 1 AA6 7 LYS A 299 ILE A 310 0 SHEET 2 AA6 7 ASN A 355 MET A 368 -1 O LEU A 362 N THR A 302 SHEET 3 AA6 7 THR A 335 GLU A 342 -1 N THR A 340 O THR A 361 SHEET 4 AA6 7 GLN A 329 PHE A 332 -1 N PHE A 330 O VAL A 337 SHEET 5 AA6 7 ARG A 373 GLU A 378 -1 O ALA A 375 N TYR A 331 SHEET 6 AA6 7 ARG A 381 VAL A 391 -1 O VAL A 383 N ILE A 376 SHEET 7 AA6 7 LYS A 299 ILE A 310 -1 N TYR A 309 O ALA A 385 SHEET 1 AA7 6 SER B 65 ASP B 70 0 SHEET 2 AA7 6 HIS B 75 ASP B 80 -1 O TYR B 76 N TYR B 69 SHEET 3 AA7 6 HIS B 11 ILE B 17 1 N VAL B 14 O ALA B 77 SHEET 4 AA7 6 ALA B 101 ALA B 106 1 O ILE B 102 N GLY B 15 SHEET 5 AA7 6 ILE B 130 ASN B 135 1 O ILE B 131 N LEU B 103 SHEET 6 AA7 6 ILE B 169 ARG B 171 1 O VAL B 170 N LEU B 134 SHEET 1 AA8 2 GLU B 54 LYS B 56 0 SHEET 2 AA8 2 THR B 61 ASN B 63 -1 O ILE B 62 N GLU B 55 SHEET 1 AA9 7 LEU B 211 PRO B 213 0 SHEET 2 AA9 7 VAL B 291 ALA B 293 -1 O LEU B 292 N LEU B 212 SHEET 3 AA9 7 GLU B 241 VAL B 245 -1 N GLU B 243 O ALA B 293 SHEET 4 AA9 7 GLN B 251 MET B 260 -1 O SER B 253 N VAL B 242 SHEET 5 AA9 7 ASN B 273 LEU B 278 -1 O LEU B 277 N GLY B 257 SHEET 6 AA9 7 THR B 225 ARG B 230 -1 N THR B 225 O LEU B 278 SHEET 7 AA9 7 ASP B 216 SER B 219 -1 N PHE B 218 O VAL B 226 SHEET 1 AB1 5 LEU B 211 PRO B 213 0 SHEET 2 AB1 5 VAL B 291 ALA B 293 -1 O LEU B 292 N LEU B 212 SHEET 3 AB1 5 GLU B 241 VAL B 245 -1 N GLU B 243 O ALA B 293 SHEET 4 AB1 5 GLN B 251 MET B 260 -1 O SER B 253 N VAL B 242 SHEET 5 AB1 5 LYS B 263 LEU B 265 -1 O LEU B 265 N VAL B 258 SHEET 1 AB2 2 ILE B 235 LYS B 237 0 SHEET 2 AB2 2 GLU B 267 ARG B 269 -1 O GLY B 268 N ILE B 236 SHEET 1 AB3 7 LYS B 299 ILE B 310 0 SHEET 2 AB3 7 ASN B 355 MET B 368 -1 O LEU B 362 N THR B 302 SHEET 3 AB3 7 THR B 335 GLU B 342 -1 N THR B 340 O THR B 361 SHEET 4 AB3 7 GLN B 329 PHE B 332 -1 N PHE B 330 O VAL B 337 SHEET 5 AB3 7 ARG B 373 GLU B 378 -1 O ALA B 375 N TYR B 331 SHEET 6 AB3 7 ARG B 381 VAL B 391 -1 O VAL B 383 N ILE B 376 SHEET 7 AB3 7 LYS B 299 ILE B 310 -1 N TYR B 309 O ALA B 385 LINK OG1 THR A 25 MG MG A 402 1555 1555 2.00 LINK O3G GNP A 401 MG MG A 402 1555 1555 1.99 LINK O2B GNP A 401 MG MG A 402 1555 1555 2.07 LINK MG MG A 402 O HOH A 511 1555 1555 2.21 LINK MG MG A 402 O HOH A 515 1555 1555 2.12 LINK MG MG A 402 O HOH A 517 1555 1555 2.04 LINK OG1 THR B 25 MG MG B 402 1555 1555 1.98 LINK O3G GNP B 401 MG MG B 402 1555 1555 1.98 LINK O1B GNP B 401 MG MG B 402 1555 1555 2.05 LINK MG MG B 402 O HOH B 510 1555 1555 2.20 LINK MG MG B 402 O HOH B 528 1555 1555 2.01 LINK MG MG B 402 O HOH B 555 1555 1555 2.19 SITE 1 AC1 20 VAL A 20 ASP A 21 HIS A 22 GLY A 23 SITE 2 AC1 20 LYS A 24 THR A 25 THR A 26 ASN A 135 SITE 3 AC1 20 LYS A 136 ASP A 138 MET A 139 SER A 173 SITE 4 AC1 20 ALA A 174 LEU A 175 MG A 402 HOH A 511 SITE 5 AC1 20 HOH A 515 HOH A 517 HOH A 542 HOH A 603 SITE 1 AC2 5 THR A 25 GNP A 401 HOH A 511 HOH A 515 SITE 2 AC2 5 HOH A 517 SITE 1 AC3 4 ARG A 288 ARG A 377 HOH A 522 HOH A 577 SITE 1 AC4 4 ASP A 165 ASP A 166 THR A 167 HOH A 557 SITE 1 AC5 2 GLU A 183 TRP A 184 SITE 1 AC6 4 LEU A 120 GLU A 307 ASN A 355 HOH A 520 SITE 1 AC7 5 MET A 260 PHE A 261 ARG A 262 LYS A 263 SITE 2 AC7 5 ARG B 288 SITE 1 AC8 5 LEU A 211 ARG A 233 ARG A 333 ASP A 369 SITE 2 AC8 5 LEU A 372 SITE 1 AC9 5 PRO A 111 MET A 112 PRO A 113 ARG A 116 SITE 2 AC9 5 HOH A 531 SITE 1 AD1 3 HIS A 84 ALA A 85 GLN A 114 SITE 1 AD2 21 VAL B 20 ASP B 21 HIS B 22 GLY B 23 SITE 2 AD2 21 LYS B 24 THR B 25 THR B 26 PHE B 46 SITE 3 AD2 21 ASN B 135 LYS B 136 ASP B 138 MET B 139 SITE 4 AD2 21 SER B 173 ALA B 174 LEU B 175 MG B 402 SITE 5 AD2 21 HOH B 510 HOH B 528 HOH B 555 HOH B 574 SITE 6 AD2 21 HOH B 585 SITE 1 AD3 5 THR B 25 GNP B 401 HOH B 510 HOH B 528 SITE 2 AD3 5 HOH B 555 SITE 1 AD4 3 ARG B 318 TYR B 326 HOH B 503 SITE 1 AD5 3 TYR B 331 ARG B 333 ARG B 373 SITE 1 AD6 2 ARG B 327 THR B 338 SITE 1 AD7 2 ARG A 283 ARG B 262 SITE 1 AD8 6 ARG A 288 MET B 260 PHE B 261 ARG B 262 SITE 2 AD8 6 LYS B 263 HOH B 543 SITE 1 AD9 4 PRO B 111 MET B 112 PRO B 113 ARG B 116 CRYST1 61.243 243.589 67.128 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016328 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004105 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014897 0.00000