HEADER RNA BINDING PROTEIN 17-NOV-17 6F00 TITLE CRYSTAL STRUCTURE OF HUMAN TRNA DIHYDROURIDINE SYNTHASE (20) DSRBD TITLE 2 E423A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA-DIHYDROURIDINE(20) SYNTHASE [NAD(P)+]-LIKE; COMPND 3 CHAIN: B, A, C; COMPND 4 SYNONYM: DIHYDROURIDINE SYNTHASE 2,UP-REGULATED IN LUNG CANCER COMPND 5 PROTEIN 8,URLC8,TRNA-DIHYDROURIDINE SYNTHASE 2-LIKE,HDUS2; COMPND 6 EC: 1.3.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DUS2, DUS2L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET11D KEYWDS DOUBLE-STRANDED RNA BINDING DOMAIN, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.N.CHARLES,H.DJEMEL REVDAT 2 17-JAN-24 6F00 1 REMARK REVDAT 1 12-DEC-18 6F00 0 JRNL AUTH B.N.CHARLES,H.DJEMEL JRNL TITL CRYSTAL STRUCTURE OF HUMAN TRNA-DIHYDROURIDINE(20) SYNTHASE JRNL TITL 2 DSRBD E423A MUTANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.190 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.4 REMARK 3 NUMBER OF REFLECTIONS : 41560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7115 - 5.3310 0.93 2827 150 0.1871 0.2483 REMARK 3 2 5.3310 - 4.2324 0.83 2522 130 0.1342 0.1880 REMARK 3 3 4.2324 - 3.6977 0.90 2768 146 0.1285 0.1539 REMARK 3 4 3.6977 - 3.3598 0.91 2804 149 0.1347 0.1912 REMARK 3 5 3.3598 - 3.1190 0.92 2737 145 0.1588 0.2251 REMARK 3 6 3.1190 - 2.9352 0.92 2829 151 0.1793 0.2438 REMARK 3 7 2.9352 - 2.7882 0.91 2835 148 0.1783 0.2043 REMARK 3 8 2.7882 - 2.6668 0.83 2482 136 0.2016 0.2657 REMARK 3 9 2.6668 - 2.5642 0.78 2326 124 0.2113 0.2569 REMARK 3 10 2.5642 - 2.4757 0.83 2522 131 0.2244 0.2953 REMARK 3 11 2.4757 - 2.3983 0.84 2677 140 0.2447 0.3175 REMARK 3 12 2.3983 - 2.3298 0.84 2627 141 0.2618 0.3291 REMARK 3 13 2.3298 - 2.2684 0.87 2525 131 0.2853 0.2844 REMARK 3 14 2.2684 - 2.2131 0.85 2607 142 0.2826 0.3600 REMARK 3 15 2.2131 - 2.1628 0.79 2379 129 0.3019 0.3377 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2402 REMARK 3 ANGLE : 1.102 3242 REMARK 3 CHIRALITY : 0.114 358 REMARK 3 PLANARITY : 0.007 400 REMARK 3 DIHEDRAL : 18.078 1474 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6F00 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200007551. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976254 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41560 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.163 REMARK 200 RESOLUTION RANGE LOW (A) : 44.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.07250 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.64060 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WFT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE 100 MM SODIUM REMARK 280 CHLORIDE 100 MM HEPES, PH 7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 337 REMARK 465 THR B 338 REMARK 465 SER B 339 REMARK 465 GLU B 340 REMARK 465 GLN B 341 REMARK 465 THR B 342 REMARK 465 GLY B 343 REMARK 465 GLU B 344 REMARK 465 GLU B 444 REMARK 465 SER B 445 REMARK 465 PRO B 446 REMARK 465 SER B 447 REMARK 465 LEU B 448 REMARK 465 HIS B 449 REMARK 465 LYS B 450 REMARK 465 HIS B 451 REMARK 465 HIS B 452 REMARK 465 HIS B 453 REMARK 465 HIS B 454 REMARK 465 HIS B 455 REMARK 465 HIS B 456 REMARK 465 MET A 337 REMARK 465 THR A 338 REMARK 465 SER A 339 REMARK 465 GLU A 340 REMARK 465 GLN A 341 REMARK 465 THR A 342 REMARK 465 GLY A 343 REMARK 465 GLU A 344 REMARK 465 PRO A 345 REMARK 465 ALA A 346 REMARK 465 GLY A 442 REMARK 465 GLU A 443 REMARK 465 GLU A 444 REMARK 465 SER A 445 REMARK 465 PRO A 446 REMARK 465 SER A 447 REMARK 465 LEU A 448 REMARK 465 HIS A 449 REMARK 465 LYS A 450 REMARK 465 HIS A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 456 REMARK 465 MET C 337 REMARK 465 THR C 338 REMARK 465 SER C 339 REMARK 465 GLU C 340 REMARK 465 GLN C 341 REMARK 465 THR C 342 REMARK 465 GLY C 343 REMARK 465 GLU C 344 REMARK 465 PRO C 345 REMARK 465 ALA C 346 REMARK 465 GLY C 442 REMARK 465 GLU C 443 REMARK 465 GLU C 444 REMARK 465 SER C 445 REMARK 465 PRO C 446 REMARK 465 SER C 447 REMARK 465 LEU C 448 REMARK 465 HIS C 449 REMARK 465 LYS C 450 REMARK 465 HIS C 451 REMARK 465 HIS C 452 REMARK 465 HIS C 453 REMARK 465 HIS C 454 REMARK 465 HIS C 455 REMARK 465 HIS C 456 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 382 CG CD CE NZ REMARK 470 GLU A 347 CG CD OE1 OE2 REMARK 470 LYS C 382 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS C 354 O HOH C 602 1.56 REMARK 500 OD2 ASP A 416 O HOH A 601 2.05 REMARK 500 OE1 GLU B 389 O HOH B 601 2.08 REMARK 500 O HOH A 631 O HOH A 641 2.14 REMARK 500 OD2 ASP C 416 O HOH C 601 2.15 REMARK 500 O HOH B 645 O HOH B 655 2.17 REMARK 500 O HOH C 615 O HOH C 652 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 645 O HOH A 655 1455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL C 357 CB VAL C 357 CG2 -0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 441 CB - CG - CD1 ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 346 72.59 -158.04 REMARK 500 GLU A 407 -0.01 68.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 505 DBREF 6F00 B 338 450 UNP Q9NX74 DUS2L_HUMAN 338 450 DBREF 6F00 A 338 450 UNP Q9NX74 DUS2L_HUMAN 338 450 DBREF 6F00 C 338 450 UNP Q9NX74 DUS2L_HUMAN 338 450 SEQADV 6F00 MET B 337 UNP Q9NX74 INITIATING METHIONINE SEQADV 6F00 ALA B 423 UNP Q9NX74 GLU 423 ENGINEERED MUTATION SEQADV 6F00 HIS B 451 UNP Q9NX74 EXPRESSION TAG SEQADV 6F00 HIS B 452 UNP Q9NX74 EXPRESSION TAG SEQADV 6F00 HIS B 453 UNP Q9NX74 EXPRESSION TAG SEQADV 6F00 HIS B 454 UNP Q9NX74 EXPRESSION TAG SEQADV 6F00 HIS B 455 UNP Q9NX74 EXPRESSION TAG SEQADV 6F00 HIS B 456 UNP Q9NX74 EXPRESSION TAG SEQADV 6F00 MET A 337 UNP Q9NX74 INITIATING METHIONINE SEQADV 6F00 ALA A 423 UNP Q9NX74 GLU 423 ENGINEERED MUTATION SEQADV 6F00 HIS A 451 UNP Q9NX74 EXPRESSION TAG SEQADV 6F00 HIS A 452 UNP Q9NX74 EXPRESSION TAG SEQADV 6F00 HIS A 453 UNP Q9NX74 EXPRESSION TAG SEQADV 6F00 HIS A 454 UNP Q9NX74 EXPRESSION TAG SEQADV 6F00 HIS A 455 UNP Q9NX74 EXPRESSION TAG SEQADV 6F00 HIS A 456 UNP Q9NX74 EXPRESSION TAG SEQADV 6F00 MET C 337 UNP Q9NX74 INITIATING METHIONINE SEQADV 6F00 ALA C 423 UNP Q9NX74 GLU 423 ENGINEERED MUTATION SEQADV 6F00 HIS C 451 UNP Q9NX74 EXPRESSION TAG SEQADV 6F00 HIS C 452 UNP Q9NX74 EXPRESSION TAG SEQADV 6F00 HIS C 453 UNP Q9NX74 EXPRESSION TAG SEQADV 6F00 HIS C 454 UNP Q9NX74 EXPRESSION TAG SEQADV 6F00 HIS C 455 UNP Q9NX74 EXPRESSION TAG SEQADV 6F00 HIS C 456 UNP Q9NX74 EXPRESSION TAG SEQRES 1 B 120 MET THR SER GLU GLN THR GLY GLU PRO ALA GLU ASP THR SEQRES 2 B 120 SER GLY VAL ILE LYS MET ALA VAL LYS PHE ASP ARG ARG SEQRES 3 B 120 ALA TYR PRO ALA GLN ILE THR PRO LYS MET CYS LEU LEU SEQRES 4 B 120 GLU TRP CYS ARG ARG GLU LYS LEU ALA GLN PRO VAL TYR SEQRES 5 B 120 GLU THR VAL GLN ARG PRO LEU ASP ARG LEU PHE SER SER SEQRES 6 B 120 ILE VAL THR VAL ALA GLU GLN LYS TYR GLN SER THR LEU SEQRES 7 B 120 TRP ASP LYS SER LYS LYS LEU ALA ALA GLN ALA ALA ALA SEQRES 8 B 120 ILE VAL CYS LEU ARG SER GLN GLY LEU PRO GLU GLY ARG SEQRES 9 B 120 LEU GLY GLU GLU SER PRO SER LEU HIS LYS HIS HIS HIS SEQRES 10 B 120 HIS HIS HIS SEQRES 1 A 120 MET THR SER GLU GLN THR GLY GLU PRO ALA GLU ASP THR SEQRES 2 A 120 SER GLY VAL ILE LYS MET ALA VAL LYS PHE ASP ARG ARG SEQRES 3 A 120 ALA TYR PRO ALA GLN ILE THR PRO LYS MET CYS LEU LEU SEQRES 4 A 120 GLU TRP CYS ARG ARG GLU LYS LEU ALA GLN PRO VAL TYR SEQRES 5 A 120 GLU THR VAL GLN ARG PRO LEU ASP ARG LEU PHE SER SER SEQRES 6 A 120 ILE VAL THR VAL ALA GLU GLN LYS TYR GLN SER THR LEU SEQRES 7 A 120 TRP ASP LYS SER LYS LYS LEU ALA ALA GLN ALA ALA ALA SEQRES 8 A 120 ILE VAL CYS LEU ARG SER GLN GLY LEU PRO GLU GLY ARG SEQRES 9 A 120 LEU GLY GLU GLU SER PRO SER LEU HIS LYS HIS HIS HIS SEQRES 10 A 120 HIS HIS HIS SEQRES 1 C 120 MET THR SER GLU GLN THR GLY GLU PRO ALA GLU ASP THR SEQRES 2 C 120 SER GLY VAL ILE LYS MET ALA VAL LYS PHE ASP ARG ARG SEQRES 3 C 120 ALA TYR PRO ALA GLN ILE THR PRO LYS MET CYS LEU LEU SEQRES 4 C 120 GLU TRP CYS ARG ARG GLU LYS LEU ALA GLN PRO VAL TYR SEQRES 5 C 120 GLU THR VAL GLN ARG PRO LEU ASP ARG LEU PHE SER SER SEQRES 6 C 120 ILE VAL THR VAL ALA GLU GLN LYS TYR GLN SER THR LEU SEQRES 7 C 120 TRP ASP LYS SER LYS LYS LEU ALA ALA GLN ALA ALA ALA SEQRES 8 C 120 ILE VAL CYS LEU ARG SER GLN GLY LEU PRO GLU GLY ARG SEQRES 9 C 120 LEU GLY GLU GLU SER PRO SER LEU HIS LYS HIS HIS HIS SEQRES 10 C 120 HIS HIS HIS HET SO4 B 501 5 HET SO4 B 502 5 HET SO4 B 503 5 HET SO4 B 504 5 HET SO4 A 501 5 HET SO4 A 502 5 HET SO4 A 503 5 HET GOL A 504 14 HET GOL A 505 14 HET GOL A 506 14 HET SO4 C 501 5 HET SO4 C 502 5 HET SO4 C 503 5 HET GOL C 504 14 HET GOL C 505 14 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 SO4 10(O4 S 2-) FORMUL 11 GOL 5(C3 H8 O3) FORMUL 19 HOH *187(H2 O) HELIX 1 AA1 ASP B 360 TYR B 364 5 5 HELIX 2 AA2 THR B 369 GLU B 381 1 13 HELIX 3 AA3 PRO B 394 ARG B 397 5 4 HELIX 4 AA4 SER B 418 SER B 433 1 16 HELIX 5 AA5 ASP A 360 TYR A 364 5 5 HELIX 6 AA6 THR A 369 GLU A 381 1 13 HELIX 7 AA7 PRO A 394 ARG A 397 5 4 HELIX 8 AA8 SER A 418 GLN A 434 1 17 HELIX 9 AA9 ASP C 360 TYR C 364 5 5 HELIX 10 AB1 THR C 369 GLU C 381 1 13 HELIX 11 AB2 PRO C 394 ARG C 397 5 4 HELIX 12 AB3 SER C 418 GLN C 434 1 17 SHEET 1 AA1 4 VAL B 352 MET B 355 0 SHEET 2 AA1 4 GLN B 408 SER B 412 1 O LYS B 409 N ILE B 353 SHEET 3 AA1 4 LEU B 398 VAL B 405 -1 N VAL B 403 O TYR B 410 SHEET 4 AA1 4 VAL B 387 ARG B 393 -1 N VAL B 391 O SER B 400 SHEET 1 AA2 4 VAL A 352 MET A 355 0 SHEET 2 AA2 4 GLN A 408 SER A 412 1 O LYS A 409 N ILE A 353 SHEET 3 AA2 4 LEU A 398 VAL A 405 -1 N VAL A 403 O TYR A 410 SHEET 4 AA2 4 VAL A 387 ARG A 393 -1 N VAL A 391 O SER A 400 SHEET 1 AA3 4 VAL C 352 MET C 355 0 SHEET 2 AA3 4 GLN C 408 SER C 412 1 O GLN C 411 N ILE C 353 SHEET 3 AA3 4 LEU C 398 VAL C 405 -1 N VAL C 403 O TYR C 410 SHEET 4 AA3 4 VAL C 387 ARG C 393 -1 N VAL C 391 O SER C 400 SITE 1 AC1 3 ARG A 362 ALA B 384 GLN B 385 SITE 1 AC2 5 GLU B 389 THR B 390 LYS B 419 HOH B 616 SITE 2 AC2 5 ALA C 356 SITE 1 AC3 3 ALA B 366 GLN B 367 ARG C 379 SITE 1 AC4 4 ARG B 432 HOH B 611 HOH B 620 HOH B 624 SITE 1 AC5 4 GLU A 389 THR A 390 LYS A 419 HOH A 602 SITE 1 AC6 3 ALA A 384 GLN A 385 ARG C 362 SITE 1 AC7 4 ARG A 361 ALA A 366 GLN A 367 ARG B 379 SITE 1 AC8 9 LYS A 354 SER A 400 GLN A 411 SER A 412 SITE 2 AC8 9 THR A 413 LEU A 414 TRP A 415 HOH A 606 SITE 3 AC8 9 HOH B 630 SITE 1 AC9 2 GLU A 438 ARG A 440 SITE 1 AD1 5 THR A 369 LYS A 371 MET A 372 GLN A 424 SITE 2 AD1 5 GLN C 367 SITE 1 AD2 3 THR C 390 LYS C 419 HOH C 606 SITE 1 AD3 3 ARG B 362 ALA C 384 GLN C 385 SITE 1 AD4 4 LEU A 375 ARG A 379 ALA C 366 GLN C 367 SITE 1 AD5 7 LYS C 354 SER C 400 SER C 412 THR C 413 SITE 2 AD5 7 LEU C 414 TRP C 415 HOH C 605 SITE 1 AD6 2 GLU C 438 ARG C 440 CRYST1 52.250 52.210 52.310 107.69 107.92 107.65 P 1 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019139 0.006090 0.009852 0.00000 SCALE2 0.000000 0.020100 0.009794 0.00000 SCALE3 0.000000 0.000000 0.022350 0.00000