HEADER HYDROLASE 17-NOV-17 6F02 TITLE CRYSTAL STRUCTURE OF HUMAN GLYCOSYLATED KALLISTATIN AT 3.0 ANGSTROM TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: KALLISTATIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: KALLIKREIN INHIBITOR,PEPTIDASE INHIBITOR 4,PI-4,SERPIN A4; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: HUMAN KALLISTATIN WAS EXPRESSED IN HEK293 CELLS WITH A COMPND 7 HIS6-TAG AT THE C-TERMINUS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SERPINA4, KST, PI4; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS SERINE PROTEASE INHIBITOR, KALLILREIN, PROTEASE, INHIBITOR, HEPARIN, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ZHOU,L.MA REVDAT 3 17-JAN-24 6F02 1 HETSYN LINK REVDAT 2 29-JUL-20 6F02 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 12-DEC-18 6F02 0 JRNL AUTH A.ZHOU,L.MA JRNL TITL CRYSTAL STRUCTURE OF HUMAN KALLISTATIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.ZHOU,L.MA REMARK 1 TITL STRUCTURE OF HUMAN NATIVE KALLISTATIN REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 104.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 27826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1430 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2054 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.3780 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.4200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6017 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 181 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.74000 REMARK 3 B22 (A**2) : 1.74000 REMARK 3 B33 (A**2) : -3.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.051 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.406 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.385 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 51.794 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.871 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6374 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5926 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8653 ; 1.157 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13769 ; 0.835 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 743 ; 6.057 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 279 ;33.734 ;23.441 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1086 ;13.560 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;16.467 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1003 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6806 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1326 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2981 ; 0.789 ; 5.234 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2980 ; 0.789 ; 5.233 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3721 ; 1.460 ; 7.846 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3722 ; 1.460 ; 7.847 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3392 ; 0.657 ; 5.357 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3392 ; 0.655 ; 5.357 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4933 ; 1.249 ; 8.022 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6489 ; 2.993 ;59.166 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6489 ; 2.993 ;59.166 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 1008 REMARK 3 ORIGIN FOR THE GROUP (A): 41.5246 135.9248 31.5043 REMARK 3 T TENSOR REMARK 3 T11: 0.5584 T22: 0.4382 REMARK 3 T33: 0.0648 T12: -0.0036 REMARK 3 T13: -0.0557 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 0.4787 L22: 0.9787 REMARK 3 L33: 1.7146 L12: 0.4408 REMARK 3 L13: -0.5788 L23: -0.8155 REMARK 3 S TENSOR REMARK 3 S11: 0.0344 S12: 0.0247 S13: -0.0180 REMARK 3 S21: 0.0616 S22: -0.0561 S23: -0.0656 REMARK 3 S31: -0.0177 S32: -0.0062 S33: 0.0217 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 45 C 508 REMARK 3 ORIGIN FOR THE GROUP (A): 46.3180 177.2368 33.3988 REMARK 3 T TENSOR REMARK 3 T11: 0.7260 T22: 0.4386 REMARK 3 T33: 0.0324 T12: -0.0042 REMARK 3 T13: -0.0540 T23: 0.0460 REMARK 3 L TENSOR REMARK 3 L11: 0.6119 L22: 1.0681 REMARK 3 L33: 2.1713 L12: -0.2674 REMARK 3 L13: -0.4701 L23: 1.3099 REMARK 3 S TENSOR REMARK 3 S11: 0.0317 S12: 0.0231 S13: -0.0314 REMARK 3 S21: -0.0922 S22: -0.0070 S23: -0.0862 REMARK 3 S31: -0.1890 S32: -0.1243 S33: -0.0248 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6F02 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200007546. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL12B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29350 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 104.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.96300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1QLP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, SALT, MICROBATCH, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.98500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 69.01000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 69.01000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 118.47750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 69.01000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 69.01000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.49250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 69.01000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.01000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 118.47750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 69.01000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.01000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.49250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.98500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 45 REMARK 465 ALA A 378 REMARK 465 ALA A 379 REMARK 465 ALA A 380 REMARK 465 THR A 381 REMARK 465 SER A 382 REMARK 465 PHE A 383 REMARK 465 ALA A 384 REMARK 465 ILE A 385 REMARK 465 LYS A 386 REMARK 465 PHE A 387 REMARK 465 PHE A 388 REMARK 465 SER A 389 REMARK 465 HIS A 428 REMARK 465 HIS A 429 REMARK 465 HIS A 430 REMARK 465 HIS A 431 REMARK 465 HIS A 432 REMARK 465 HIS A 433 REMARK 465 ALA C 380 REMARK 465 THR C 381 REMARK 465 SER C 382 REMARK 465 PHE C 383 REMARK 465 ALA C 384 REMARK 465 ILE C 385 REMARK 465 LYS C 386 REMARK 465 PHE C 387 REMARK 465 HIS C 428 REMARK 465 HIS C 429 REMARK 465 HIS C 430 REMARK 465 HIS C 431 REMARK 465 HIS C 432 REMARK 465 HIS C 433 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE C 388 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 95 -105.12 47.83 REMARK 500 ASP A 273 58.54 -95.24 REMARK 500 PHE A 342 67.49 -103.74 REMARK 500 GLN A 391 114.86 -168.70 REMARK 500 PHE C 76 116.01 -162.27 REMARK 500 SER C 95 -84.20 45.15 REMARK 500 PRO C 131 -58.04 -29.54 REMARK 500 ASN C 148 4.33 84.56 REMARK 500 PHE C 342 67.71 -101.54 REMARK 500 LEU C 348 48.23 -103.72 REMARK 500 LEU C 357 31.28 -98.73 REMARK 500 SER C 389 -83.76 -160.62 REMARK 500 REMARK 500 REMARK: NULL DBREF 6F02 A 45 427 UNP P29622 KAIN_HUMAN 45 427 DBREF 6F02 C 45 427 UNP P29622 KAIN_HUMAN 45 427 SEQADV 6F02 HIS A 428 UNP P29622 EXPRESSION TAG SEQADV 6F02 HIS A 429 UNP P29622 EXPRESSION TAG SEQADV 6F02 HIS A 430 UNP P29622 EXPRESSION TAG SEQADV 6F02 HIS A 431 UNP P29622 EXPRESSION TAG SEQADV 6F02 HIS A 432 UNP P29622 EXPRESSION TAG SEQADV 6F02 HIS A 433 UNP P29622 EXPRESSION TAG SEQADV 6F02 HIS C 428 UNP P29622 EXPRESSION TAG SEQADV 6F02 HIS C 429 UNP P29622 EXPRESSION TAG SEQADV 6F02 HIS C 430 UNP P29622 EXPRESSION TAG SEQADV 6F02 HIS C 431 UNP P29622 EXPRESSION TAG SEQADV 6F02 HIS C 432 UNP P29622 EXPRESSION TAG SEQADV 6F02 HIS C 433 UNP P29622 EXPRESSION TAG SEQRES 1 A 389 GLY SER PRO SER LEU LYS ILE ALA PRO ALA ASN ALA ASP SEQRES 2 A 389 PHE ALA PHE ARG PHE TYR TYR LEU ILE ALA SER GLU THR SEQRES 3 A 389 PRO GLY LYS ASN ILE PHE PHE SER PRO LEU SER ILE SER SEQRES 4 A 389 ALA ALA TYR ALA MET LEU SER LEU GLY ALA CYS SER HIS SEQRES 5 A 389 SER ARG SER GLN ILE LEU GLU GLY LEU GLY PHE ASN LEU SEQRES 6 A 389 THR GLU LEU SER GLU SER ASP VAL HIS ARG GLY PHE GLN SEQRES 7 A 389 HIS LEU LEU HIS THR LEU ASN LEU PRO GLY HIS GLY LEU SEQRES 8 A 389 GLU THR ARG VAL GLY SER ALA LEU PHE LEU SER HIS ASN SEQRES 9 A 389 LEU LYS PHE LEU ALA LYS PHE LEU ASN ASP THR MET ALA SEQRES 10 A 389 VAL TYR GLU ALA LYS LEU PHE HIS THR ASN PHE TYR ASP SEQRES 11 A 389 THR VAL GLY THR ILE GLN LEU ILE ASN ASP HIS VAL LYS SEQRES 12 A 389 LYS GLU THR ARG GLY LYS ILE VAL ASP LEU VAL SER GLU SEQRES 13 A 389 LEU LYS LYS ASP VAL LEU MET VAL LEU VAL ASN TYR ILE SEQRES 14 A 389 TYR PHE LYS ALA LEU TRP GLU LYS PRO PHE ILE SER SER SEQRES 15 A 389 ARG THR THR PRO LYS ASP PHE TYR VAL ASP GLU ASN THR SEQRES 16 A 389 THR VAL ARG VAL PRO MET MET LEU GLN ASP GLN GLU HIS SEQRES 17 A 389 HIS TRP TYR LEU HIS ASP ARG TYR LEU PRO CYS SER VAL SEQRES 18 A 389 LEU ARG MET ASP TYR LYS GLY ASP ALA THR VAL PHE PHE SEQRES 19 A 389 ILE LEU PRO ASN GLN GLY LYS MET ARG GLU ILE GLU GLU SEQRES 20 A 389 VAL LEU THR PRO GLU MET LEU MET ARG TRP ASN ASN LEU SEQRES 21 A 389 LEU ARG LYS ARG ASN PHE TYR LYS LYS LEU GLU LEU HIS SEQRES 22 A 389 LEU PRO LYS PHE SER ILE SER GLY SER TYR VAL LEU ASP SEQRES 23 A 389 GLN ILE LEU PRO ARG LEU GLY PHE THR ASP LEU PHE SER SEQRES 24 A 389 LYS TRP ALA ASP LEU SER GLY ILE THR LYS GLN GLN LYS SEQRES 25 A 389 LEU GLU ALA SER LYS SER PHE HIS LYS ALA THR LEU ASP SEQRES 26 A 389 VAL ASP GLU ALA GLY THR GLU ALA ALA ALA ALA THR SER SEQRES 27 A 389 PHE ALA ILE LYS PHE PHE SER ALA GLN THR ASN ARG HIS SEQRES 28 A 389 ILE LEU ARG PHE ASN ARG PRO PHE LEU VAL VAL ILE PHE SEQRES 29 A 389 SER THR SER THR GLN SER VAL LEU PHE LEU GLY LYS VAL SEQRES 30 A 389 VAL ASP PRO THR LYS PRO HIS HIS HIS HIS HIS HIS SEQRES 1 C 389 GLY SER PRO SER LEU LYS ILE ALA PRO ALA ASN ALA ASP SEQRES 2 C 389 PHE ALA PHE ARG PHE TYR TYR LEU ILE ALA SER GLU THR SEQRES 3 C 389 PRO GLY LYS ASN ILE PHE PHE SER PRO LEU SER ILE SER SEQRES 4 C 389 ALA ALA TYR ALA MET LEU SER LEU GLY ALA CYS SER HIS SEQRES 5 C 389 SER ARG SER GLN ILE LEU GLU GLY LEU GLY PHE ASN LEU SEQRES 6 C 389 THR GLU LEU SER GLU SER ASP VAL HIS ARG GLY PHE GLN SEQRES 7 C 389 HIS LEU LEU HIS THR LEU ASN LEU PRO GLY HIS GLY LEU SEQRES 8 C 389 GLU THR ARG VAL GLY SER ALA LEU PHE LEU SER HIS ASN SEQRES 9 C 389 LEU LYS PHE LEU ALA LYS PHE LEU ASN ASP THR MET ALA SEQRES 10 C 389 VAL TYR GLU ALA LYS LEU PHE HIS THR ASN PHE TYR ASP SEQRES 11 C 389 THR VAL GLY THR ILE GLN LEU ILE ASN ASP HIS VAL LYS SEQRES 12 C 389 LYS GLU THR ARG GLY LYS ILE VAL ASP LEU VAL SER GLU SEQRES 13 C 389 LEU LYS LYS ASP VAL LEU MET VAL LEU VAL ASN TYR ILE SEQRES 14 C 389 TYR PHE LYS ALA LEU TRP GLU LYS PRO PHE ILE SER SER SEQRES 15 C 389 ARG THR THR PRO LYS ASP PHE TYR VAL ASP GLU ASN THR SEQRES 16 C 389 THR VAL ARG VAL PRO MET MET LEU GLN ASP GLN GLU HIS SEQRES 17 C 389 HIS TRP TYR LEU HIS ASP ARG TYR LEU PRO CYS SER VAL SEQRES 18 C 389 LEU ARG MET ASP TYR LYS GLY ASP ALA THR VAL PHE PHE SEQRES 19 C 389 ILE LEU PRO ASN GLN GLY LYS MET ARG GLU ILE GLU GLU SEQRES 20 C 389 VAL LEU THR PRO GLU MET LEU MET ARG TRP ASN ASN LEU SEQRES 21 C 389 LEU ARG LYS ARG ASN PHE TYR LYS LYS LEU GLU LEU HIS SEQRES 22 C 389 LEU PRO LYS PHE SER ILE SER GLY SER TYR VAL LEU ASP SEQRES 23 C 389 GLN ILE LEU PRO ARG LEU GLY PHE THR ASP LEU PHE SER SEQRES 24 C 389 LYS TRP ALA ASP LEU SER GLY ILE THR LYS GLN GLN LYS SEQRES 25 C 389 LEU GLU ALA SER LYS SER PHE HIS LYS ALA THR LEU ASP SEQRES 26 C 389 VAL ASP GLU ALA GLY THR GLU ALA ALA ALA ALA THR SER SEQRES 27 C 389 PHE ALA ILE LYS PHE PHE SER ALA GLN THR ASN ARG HIS SEQRES 28 C 389 ILE LEU ARG PHE ASN ARG PRO PHE LEU VAL VAL ILE PHE SEQRES 29 C 389 SER THR SER THR GLN SER VAL LEU PHE LEU GLY LYS VAL SEQRES 30 C 389 VAL ASP PRO THR LYS PRO HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET FUL B 4 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET FUL D 4 10 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET FUL E 4 10 HET NAG F 1 14 HET FUL F 2 10 HET SO4 C 507 5 HET SO4 C 508 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE FORMUL 3 NAG 7(C8 H15 N O6) FORMUL 3 BMA 3(C6 H12 O6) FORMUL 3 FUL 4(C6 H12 O5) FORMUL 7 SO4 2(O4 S 2-) FORMUL 9 HOH *2(H2 O) HELIX 1 AA1 ILE A 51 THR A 70 1 20 HELIX 2 AA2 SER A 78 SER A 90 1 13 HELIX 3 AA3 SER A 95 LEU A 105 1 11 HELIX 4 AA4 SER A 113 ASN A 129 1 17 HELIX 5 AA5 LEU A 152 GLU A 164 1 13 HELIX 6 AA6 ASP A 174 THR A 190 1 17 HELIX 7 AA7 ILE A 224 THR A 228 5 5 HELIX 8 AA8 LYS A 285 VAL A 292 1 8 HELIX 9 AA9 THR A 294 LEU A 305 1 12 HELIX 10 AB1 ARG A 306 ASN A 309 5 4 HELIX 11 AB2 LEU A 329 LEU A 333 1 5 HELIX 12 AB3 PRO A 334 GLY A 337 5 4 HELIX 13 AB4 SER C 46 THR C 70 1 25 HELIX 14 AB5 SER C 78 LEU C 91 1 14 HELIX 15 AB6 SER C 95 LEU C 105 1 11 HELIX 16 AB7 SER C 113 ASN C 129 1 17 HELIX 17 AB8 LEU C 152 GLU C 164 1 13 HELIX 18 AB9 ASP C 174 THR C 190 1 17 HELIX 19 AC1 ILE C 224 THR C 228 5 5 HELIX 20 AC2 LYS C 285 GLU C 291 1 7 HELIX 21 AC3 THR C 294 LEU C 305 1 12 HELIX 22 AC4 ARG C 306 ASN C 309 5 4 HELIX 23 AC5 LEU C 329 LEU C 333 1 5 HELIX 24 AC6 PRO C 334 GLY C 337 5 4 SHEET 1 AA1 7 ILE A 75 PHE A 77 0 SHEET 2 AA1 7 SER A 414 VAL A 421 -1 O LEU A 418 N PHE A 77 SHEET 3 AA1 7 PHE A 403 SER A 409 -1 N VAL A 405 O GLY A 419 SHEET 4 AA1 7 ALA A 274 PRO A 281 -1 N THR A 275 O PHE A 408 SHEET 5 AA1 7 CYS A 263 ASP A 269 -1 N SER A 264 O LEU A 280 SHEET 6 AA1 7 HIS A 252 HIS A 257 -1 N TRP A 254 O ARG A 267 SHEET 7 AA1 7 TYR A 311 LYS A 313 -1 O LYS A 312 N HIS A 253 SHEET 1 AA2 5 LYS A 166 THR A 170 0 SHEET 2 AA2 5 GLU A 136 SER A 146 1 N LEU A 143 O PHE A 168 SHEET 3 AA2 5 MET A 207 LYS A 216 -1 O LYS A 216 N GLU A 136 SHEET 4 AA2 5 LYS A 361 VAL A 370 1 O PHE A 363 N LEU A 209 SHEET 5 AA2 5 PHE A 321 VAL A 328 -1 N TYR A 327 O HIS A 364 SHEET 1 AA3 4 THR A 229 PHE A 233 0 SHEET 2 AA3 4 VAL A 241 GLN A 248 -1 O MET A 245 N THR A 229 SHEET 3 AA3 4 GLU A 315 PRO A 319 -1 O LEU A 316 N GLN A 248 SHEET 4 AA3 4 ILE A 396 ARG A 398 1 O LEU A 397 N HIS A 317 SHEET 1 AA4 7 ILE C 75 PHE C 77 0 SHEET 2 AA4 7 SER C 414 VAL C 421 -1 O LYS C 420 N ILE C 75 SHEET 3 AA4 7 PHE C 403 SER C 409 -1 N SER C 409 O SER C 414 SHEET 4 AA4 7 ALA C 274 PRO C 281 -1 N THR C 275 O PHE C 408 SHEET 5 AA4 7 CYS C 263 ASP C 269 -1 N SER C 264 O LEU C 280 SHEET 6 AA4 7 HIS C 252 HIS C 257 -1 N TRP C 254 O ARG C 267 SHEET 7 AA4 7 TYR C 311 LYS C 313 -1 O LYS C 312 N HIS C 253 SHEET 1 AA5 5 LYS C 166 THR C 170 0 SHEET 2 AA5 5 GLU C 136 SER C 146 1 N LEU C 145 O PHE C 168 SHEET 3 AA5 5 MET C 207 LYS C 216 -1 O VAL C 208 N PHE C 144 SHEET 4 AA5 5 LYS C 361 VAL C 370 1 O PHE C 363 N LEU C 209 SHEET 5 AA5 5 PHE C 321 VAL C 328 -1 N TYR C 327 O HIS C 364 SHEET 1 AA6 4 THR C 229 PHE C 233 0 SHEET 2 AA6 4 VAL C 241 GLN C 248 -1 O MET C 245 N THR C 229 SHEET 3 AA6 4 GLU C 315 PRO C 319 -1 O LEU C 316 N GLN C 248 SHEET 4 AA6 4 ILE C 396 ARG C 398 1 O LEU C 397 N HIS C 317 LINK ND2 ASN A 108 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 157 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN C 108 C1 NAG F 1 1555 1555 1.45 LINK ND2 ASN C 157 C1 NAG E 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O6 NAG B 1 C1 FUL B 4 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.46 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O6 NAG D 1 C1 FUL D 4 1555 1555 1.45 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O6 NAG E 1 C1 FUL E 4 1555 1555 1.45 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.46 LINK O6 NAG F 1 C1 FUL F 2 1555 1555 1.45 CRYST1 138.020 138.020 157.970 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007245 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007245 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006330 0.00000