HEADER IMMUNE SYSTEM 19-NOV-17 6F0D TITLE CRYSTAL STRUCTURE OF A LLAMA VHH ANTIBODY BCD090-M2 AGAINST HUMAN TITLE 2 ERBB3 IN SPACE GROUP P1 WITH CADMIUM IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: VHH ANTIBODY BCD090-M2; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_TAXID: 9844; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VHH, LLAMA ANTIBODY, SINGLE-DOMAIN ANTIBODY, NANOBODY, ERBB3, HER3, KEYWDS 2 RECEPTOR TYROSINE KINASE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR I.E.ELISEEV,A.N.YUDENKO,V.V.VYSOCHINSKAYA,A.A.SVIRINA, AUTHOR 2 A.V.EVSTRATYEVA,M.S.DROZHZHACHIH,E.A.KRENDELEVA,A.K.VLADIMIROVA, AUTHOR 3 T.A.NEMANKIN,V.M.EKIMOVA,A.B.ULITIN,M.I.LOMOVSKAYA,P.A.YAKOVLEV, AUTHOR 4 F.V.MOISEENKO,O.B.CHAKCHIR REVDAT 3 17-JAN-24 6F0D 1 JRNL LINK REVDAT 2 28-NOV-18 6F0D 1 JRNL REVDAT 1 29-NOV-17 6F0D 0 JRNL AUTH I.E.ELISEEV,A.N.YUDENKO,V.V.VYSOCHINSKAYA,A.A.SVIRINA, JRNL AUTH 2 A.V.EVSTRATYEVA,M.S.DROZHZHACHIH,E.A.KRENDELEVA, JRNL AUTH 3 A.K.VLADIMIROVA,T.A.NEMANKIN,V.M.EKIMOVA,A.B.ULITIN, JRNL AUTH 4 M.I.LOMOVSKAYA,P.A.YAKOVLEV,A.S.BUKATIN,N.A.KNYAZEV, JRNL AUTH 5 F.V.MOISEENKO,O.B.CHAKCHIR JRNL TITL CRYSTAL STRUCTURES OF A LLAMA VHH ANTIBODY BCD090-M2 JRNL TITL 2 TARGETING HUMAN ERBB3 RECEPTOR. JRNL REF F1000RES V. 7 57 2018 JRNL REFN ESSN 2046-1402 JRNL PMID 30430004 JRNL DOI 10.12688/F1000RESEARCH.13612.1 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.119 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 18248 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.023 REMARK 3 FREE R VALUE TEST SET COUNT : 1829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.3463 - 4.4639 1.00 1303 145 0.1302 0.1686 REMARK 3 2 4.4639 - 3.5446 1.00 1296 144 0.1391 0.1787 REMARK 3 3 3.5446 - 3.0969 0.99 1298 146 0.1643 0.2019 REMARK 3 4 3.0969 - 2.8140 0.99 1291 143 0.1777 0.2211 REMARK 3 5 2.8140 - 2.6124 0.98 1281 141 0.1788 0.2427 REMARK 3 6 2.6124 - 2.4584 0.98 1277 139 0.1875 0.2203 REMARK 3 7 2.4584 - 2.3353 0.97 1283 141 0.1913 0.2651 REMARK 3 8 2.3353 - 2.2337 0.96 1242 138 0.1849 0.2204 REMARK 3 9 2.2337 - 2.1477 0.95 1265 144 0.1881 0.2419 REMARK 3 10 2.1477 - 2.0736 0.95 1213 136 0.1952 0.2455 REMARK 3 11 2.0736 - 2.0088 0.95 1267 141 0.2212 0.2337 REMARK 3 12 2.0088 - 1.9514 0.93 1201 135 0.2386 0.3004 REMARK 3 13 1.9514 - 1.9000 0.92 1202 136 0.2574 0.3136 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.215 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.304 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2006 REMARK 3 ANGLE : 1.531 2714 REMARK 3 CHIRALITY : 0.072 280 REMARK 3 PLANARITY : 0.008 358 REMARK 3 DIHEDRAL : 20.018 722 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6F0D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200007555. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 293.15 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER IMUS MICROFOCUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : APEX II CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT V8.18C REMARK 200 DATA SCALING SOFTWARE : SADABS 2008/1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18859 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 32.342 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.09 REMARK 200 R MERGE (I) : 0.14428 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9301 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 5.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 32.35 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 20.02 REMARK 200 R MERGE FOR SHELL (I) : 0.07362 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 46.92 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.16 REMARK 200 STARTING MODEL: 6EZW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 17 MG/ML IN 20 MM REMARK 280 HEPES PH 7.5, 50 MM NACL RESERVOIR SOLUTION: 0.1 M MES PH 6.5, REMARK 280 12% W/V PEG 3350, 5 MM CDSO4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 20 N LEU A 21 1.75 REMARK 500 O HOH B 255 O HOH B 272 1.91 REMARK 500 O ARG A 28 O HOH A 301 2.02 REMARK 500 O HOH B 247 O HOH B 283 2.03 REMARK 500 ND2 ASN A 75 O HOH A 302 2.12 REMARK 500 NZ LYS B 88 O HOH B 201 2.15 REMARK 500 O HOH B 220 O HOH B 221 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 284 O HOH A 362 1456 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU B 12 C VAL B 13 N -0.170 REMARK 500 GLY A 1 C GLN A 2 N -0.198 REMARK 500 GLN A 2 C VAL A 3 N -0.179 REMARK 500 GLY A 17 C SER A 18 N -0.205 REMARK 500 ARG A 20 C LEU A 21 N -0.178 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 1 O - C - N ANGL. DEV. = -10.4 DEGREES REMARK 500 GLN A 2 O - C - N ANGL. DEV. = -11.8 DEGREES REMARK 500 ARG A 20 CA - C - N ANGL. DEV. = 27.0 DEGREES REMARK 500 ARG A 20 O - C - N ANGL. DEV. = -28.1 DEGREES REMARK 500 LEU A 21 C - N - CA ANGL. DEV. = 17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 29 65.64 64.46 REMARK 500 ALA B 93 167.90 178.81 REMARK 500 SER B 105 -157.89 -117.42 REMARK 500 PHE A 30 -39.67 -35.89 REMARK 500 SER A 105 -155.76 -102.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 1 -12.48 REMARK 500 ARG A 20 -10.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 1 N REMARK 620 2 ASP A 100 OD1 123.2 REMARK 620 3 GLU A 114 O 122.4 4.3 REMARK 620 4 ASP A 116 OD1 122.0 4.3 0.3 REMARK 620 5 HOH A 325 O 119.5 4.0 6.5 6.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 100 OD1 REMARK 620 2 GLU B 114 O 81.9 REMARK 620 3 ASP B 116 OD1 115.1 83.3 REMARK 620 4 HOH B 230 O 69.5 46.5 129.4 REMARK 620 5 GLY A 1 N 72.9 44.6 127.1 3.7 REMARK 620 6 GLY A 1 O 74.3 43.0 125.1 5.7 2.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6EZW RELATED DB: PDB REMARK 900 6EZW CONTAINS THE SAME PROTEIN CRYSTALLIZED IN A DIFFERENT SPACE REMARK 900 GROUP (C@) WITHOUT CADMIUM IONS DBREF 6F0D B 1 128 PDB 6F0D 6F0D 1 128 DBREF 6F0D A 1 128 PDB 6F0D 6F0D 1 128 SEQRES 1 B 128 GLY GLN VAL GLN LEU VAL GLN SER GLY GLY GLY LEU VAL SEQRES 2 B 128 GLN ALA GLY GLY SER LEU ARG LEU SER CYS ALA PHE SER SEQRES 3 B 128 GLY ARG THR PHE SER MET TYR THR MET GLY TRP PHE ARG SEQRES 4 B 128 GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA ASN SEQRES 5 B 128 ARG GLY ARG GLY LEU SER PRO ASP ILE ALA ASP SER VAL SEQRES 6 B 128 ASN GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SEQRES 7 B 128 THR LEU TYR LEU GLN MET ASP SER LEU LYS PRO GLU ASP SEQRES 8 B 128 THR ALA VAL TYR TYR CYS ALA ALA ASP LEU GLN TYR GLY SEQRES 9 B 128 SER SER TRP PRO GLN ARG SER SER ALA GLU TYR ASP TYR SEQRES 10 B 128 TRP GLY GLN GLY THR THR VAL THR VAL SER SER SEQRES 1 A 128 GLY GLN VAL GLN LEU VAL GLN SER GLY GLY GLY LEU VAL SEQRES 2 A 128 GLN ALA GLY GLY SER LEU ARG LEU SER CYS ALA PHE SER SEQRES 3 A 128 GLY ARG THR PHE SER MET TYR THR MET GLY TRP PHE ARG SEQRES 4 A 128 GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA ASN SEQRES 5 A 128 ARG GLY ARG GLY LEU SER PRO ASP ILE ALA ASP SER VAL SEQRES 6 A 128 ASN GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SEQRES 7 A 128 THR LEU TYR LEU GLN MET ASP SER LEU LYS PRO GLU ASP SEQRES 8 A 128 THR ALA VAL TYR TYR CYS ALA ALA ASP LEU GLN TYR GLY SEQRES 9 A 128 SER SER TRP PRO GLN ARG SER SER ALA GLU TYR ASP TYR SEQRES 10 A 128 TRP GLY GLN GLY THR THR VAL THR VAL SER SER HET CD A 201 1 HET CD A 202 1 HETNAM CD CADMIUM ION FORMUL 3 CD 2(CD 2+) FORMUL 5 HOH *155(H2 O) HELIX 1 AA1 THR B 29 SER B 31 5 3 HELIX 2 AA2 ASP B 63 ASN B 66 5 4 HELIX 3 AA3 LYS B 88 THR B 92 5 5 HELIX 4 AA4 SER B 111 TYR B 115 5 5 HELIX 5 AA5 THR A 29 SER A 31 5 3 HELIX 6 AA6 ASP A 63 ASN A 66 5 4 HELIX 7 AA7 LYS A 88 THR A 92 5 5 HELIX 8 AA8 SER A 111 TYR A 115 5 5 SHEET 1 AA1 4 GLN B 4 SER B 8 0 SHEET 2 AA1 4 LEU B 19 SER B 26 -1 O ALA B 24 N VAL B 6 SHEET 3 AA1 4 THR B 79 MET B 84 -1 O MET B 84 N LEU B 19 SHEET 4 AA1 4 PHE B 69 ASP B 74 -1 N ASP B 74 O THR B 79 SHEET 1 AA2 6 GLY B 11 GLN B 14 0 SHEET 2 AA2 6 THR B 122 SER B 127 1 O SER B 127 N VAL B 13 SHEET 3 AA2 6 ALA B 93 LEU B 101 -1 N TYR B 95 O THR B 122 SHEET 4 AA2 6 TYR B 33 GLN B 40 -1 N THR B 34 O ASP B 100 SHEET 5 AA2 6 GLU B 47 ASN B 52 -1 O ALA B 50 N TRP B 37 SHEET 6 AA2 6 ASP B 60 ILE B 61 -1 O ASP B 60 N ALA B 51 SHEET 1 AA3 4 GLY B 11 GLN B 14 0 SHEET 2 AA3 4 THR B 122 SER B 127 1 O SER B 127 N VAL B 13 SHEET 3 AA3 4 ALA B 93 LEU B 101 -1 N TYR B 95 O THR B 122 SHEET 4 AA3 4 TYR B 117 TRP B 118 -1 O TYR B 117 N ALA B 99 SHEET 1 AA4 4 GLN A 4 SER A 8 0 SHEET 2 AA4 4 LEU A 19 SER A 26 -1 O ALA A 24 N VAL A 6 SHEET 3 AA4 4 THR A 79 MET A 84 -1 O MET A 84 N LEU A 19 SHEET 4 AA4 4 PHE A 69 ASP A 74 -1 N SER A 72 O TYR A 81 SHEET 1 AA5 6 GLY A 11 GLN A 14 0 SHEET 2 AA5 6 THR A 122 SER A 127 1 O THR A 125 N VAL A 13 SHEET 3 AA5 6 ALA A 93 LEU A 101 -1 N TYR A 95 O THR A 122 SHEET 4 AA5 6 TYR A 33 GLN A 40 -1 N PHE A 38 O TYR A 96 SHEET 5 AA5 6 GLU A 47 ASN A 52 -1 O ALA A 50 N TRP A 37 SHEET 6 AA5 6 ASP A 60 ILE A 61 -1 O ASP A 60 N ALA A 51 SHEET 1 AA6 4 GLY A 11 GLN A 14 0 SHEET 2 AA6 4 THR A 122 SER A 127 1 O THR A 125 N VAL A 13 SHEET 3 AA6 4 ALA A 93 LEU A 101 -1 N TYR A 95 O THR A 122 SHEET 4 AA6 4 TYR A 117 TRP A 118 -1 O TYR A 117 N ALA A 99 SSBOND 1 CYS B 23 CYS B 97 1555 1555 2.17 SSBOND 2 CYS A 23 CYS A 97 1555 1555 2.03 LINK N GLY B 1 CD CD A 201 1555 1455 2.65 LINK OD1 ASP B 100 CD CD A 202 1555 1455 2.37 LINK O GLU B 114 CD CD A 202 1555 1455 2.44 LINK OD1 ASP B 116 CD CD A 202 1555 1455 2.46 LINK O HOH B 230 CD CD A 202 1655 1555 2.56 LINK N GLY A 1 CD CD A 202 1555 1555 2.62 LINK O GLY A 1 CD CD A 202 1555 1555 2.60 LINK OD1 ASP A 100 CD CD A 201 1555 1555 1.97 LINK O GLU A 114 CD CD A 201 1555 1555 2.51 LINK OD1 ASP A 116 CD CD A 201 1555 1555 2.37 LINK CD CD A 201 O HOH A 325 1555 1555 2.51 CISPEP 1 TRP B 107 PRO B 108 0 -5.08 CISPEP 2 TRP A 107 PRO A 108 0 -5.11 SITE 1 AC1 5 ASP A 100 GLU A 114 ASP A 116 HOH A 325 SITE 2 AC1 5 GLY B 1 SITE 1 AC2 5 GLY A 1 ASP B 100 GLU B 114 ASP B 116 SITE 2 AC2 5 HOH B 230 CRYST1 35.766 41.526 46.487 89.99 67.92 76.06 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027960 -0.006939 -0.012100 0.00000 SCALE2 0.000000 0.024812 0.002507 0.00000 SCALE3 0.000000 0.000000 0.023332 0.00000