HEADER TOXIN 20-NOV-17 6F0P TITLE BOTULINUM NEUROTOXIN A4 HC DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROTOXIN TYPE A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HC DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 3 ORGANISM_TAXID: 1491; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BOTULINUM NEUROTOXIN A4 SUBTYPE, A4, BINDING DOMAIN, HC DOMAIN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR J.R.DAVIES,J.REES,S.M.LIU,K.R.ACHARYA REVDAT 3 17-JAN-24 6F0P 1 REMARK REVDAT 2 04-APR-18 6F0P 1 JRNL REVDAT 1 10-JAN-18 6F0P 0 JRNL AUTH J.R.DAVIES,J.REES,S.M.LIU,K.R.ACHARYA JRNL TITL HIGH RESOLUTION CRYSTAL STRUCTURES OF CLOSTRIDIUM BOTULINUM JRNL TITL 2 NEUROTOXIN A3 AND A4 BINDING DOMAINS. JRNL REF J. STRUCT. BIOL. V. 202 113 2018 JRNL REFN ESSN 1095-8657 JRNL PMID 29288126 JRNL DOI 10.1016/J.JSB.2017.12.010 REMARK 2 REMARK 2 RESOLUTION. 1.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 113786 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.158 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2017 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.34 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8377 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3423 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 309 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.043 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.039 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.603 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3623 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3334 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4889 ; 1.490 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7734 ; 0.912 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 434 ; 6.974 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;35.928 ;24.426 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 654 ;12.675 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;16.119 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 525 ; 0.215 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4008 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 767 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1712 ; 2.973 ; 1.806 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1711 ; 2.872 ; 1.803 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2151 ; 4.011 ; 2.724 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2152 ; 4.012 ; 2.726 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1911 ; 3.678 ; 2.175 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1911 ; 3.678 ; 2.175 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2738 ; 4.639 ; 3.113 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4019 ; 5.381 ;22.130 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4020 ; 5.380 ;22.133 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6957 ; 1.565 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 207 ;22.325 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6989 ;12.905 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6F0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200006549. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116165 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.340 REMARK 200 RESOLUTION RANGE LOW (A) : 81.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.70 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 2.30600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VUA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM SPERMINE TETRAHYDROCHLORIDE, 10 REMARK 280 MM SPERMIDINE TRIHYDROCHLORIDE, 10 MM 1,4-DIAMINOBUTANE REMARK 280 DIHYDROCHLORIDE, 10 MM D-L-ORNITHINE MONOHYDROCHLORIDE, 0.1 M REMARK 280 MOPSO/BIS-TRIS PH 6.5, 15%(W/V) PEG 3K, 20%(V/V) 1,2,4- REMARK 280 BUTANETRIOL, 1%(W/V) NDSB 256, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 57.94400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.94400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.94400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.94400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.94400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.94400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 57.94400 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 57.94400 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 57.94400 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 57.94400 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 57.94400 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 57.94400 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 57.94400 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 57.94400 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 57.94400 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 57.94400 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 57.94400 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 57.94400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 870 REMARK 465 HIS A 871 REMARK 465 HIS A 872 REMARK 465 HIS A 873 REMARK 465 HIS A 874 REMARK 465 HIS A 875 REMARK 465 HIS A 876 REMARK 465 LYS A 877 REMARK 465 ASN A 878 REMARK 465 LYS A 890 REMARK 465 ASP A 891 REMARK 465 ASP A 892 REMARK 465 ASP A 893 REMARK 465 PRO A 1301 REMARK 465 LEU A 1302 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 881 CG OD1 ND2 REMARK 470 ASP A 908 CG OD1 OD2 REMARK 470 ASN A1049 CG OD1 ND2 REMARK 470 LYS A1176 CG CD CE NZ REMARK 470 ARG A1300 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1558 O HOH A 1703 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 994 OH TYR A 1123 6456 1.95 REMARK 500 NZ LYS A 936 O HOH A 1504 8656 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 941 89.04 -153.99 REMARK 500 THR A1031 -97.68 -129.43 REMARK 500 LYS A1062 138.96 -173.32 REMARK 500 ASP A1082 36.46 -92.09 REMARK 500 ASN A1133 140.75 76.60 REMARK 500 TYR A1161 68.03 -100.03 REMARK 500 TYR A1171 -73.33 -127.78 REMARK 500 GLN A1225 -15.97 -154.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1401 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1259 ND1 REMARK 620 2 BTB A1409 O4 93.3 REMARK 620 3 BTB A1409 O6 95.6 88.9 REMARK 620 4 BTB A1409 O3 103.2 83.2 160.0 REMARK 620 5 BTB A1409 N 172.2 79.3 82.1 78.3 REMARK 620 6 BTB A1409 O8 104.3 161.7 94.0 88.0 83.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BTB A 1409 DBREF 6F0P A 877 1302 UNP Q3LRX8 Q3LRX8_CLOBO 871 1296 SEQADV 6F0P MET A 870 UNP Q3LRX8 INITIATING METHIONINE SEQADV 6F0P HIS A 871 UNP Q3LRX8 EXPRESSION TAG SEQADV 6F0P HIS A 872 UNP Q3LRX8 EXPRESSION TAG SEQADV 6F0P HIS A 873 UNP Q3LRX8 EXPRESSION TAG SEQADV 6F0P HIS A 874 UNP Q3LRX8 EXPRESSION TAG SEQADV 6F0P HIS A 875 UNP Q3LRX8 EXPRESSION TAG SEQADV 6F0P HIS A 876 UNP Q3LRX8 EXPRESSION TAG SEQRES 1 A 433 MET HIS HIS HIS HIS HIS HIS LYS ASN ILE THR ASN ALA SEQRES 2 A 433 SER ILE LEU SER ILE VAL TYR LYS ASP ASP ASP LEU ILE SEQRES 3 A 433 ASP LEU SER ARG TYR GLY ALA GLU ILE TYR ASN GLY ASP SEQRES 4 A 433 LYS VAL TYR TYR ASN SER ILE ASP LYS ASN GLN ILE ARG SEQRES 5 A 433 LEU ILE ASN LEU GLU SER SER THR ILE GLU VAL ILE LEU SEQRES 6 A 433 LYS LYS ALA ILE VAL TYR ASN SER MET TYR GLU ASN PHE SEQRES 7 A 433 SER THR SER PHE TRP ILE ARG ILE PRO LYS TYR PHE ASN SEQRES 8 A 433 SER ILE SER LEU ASN ASN GLU TYR THR ILE ILE ASN CYS SEQRES 9 A 433 MET GLU ASN ASN SER GLY TRP LYS VAL SER LEU ASN TYR SEQRES 10 A 433 GLY GLU ILE ILE TRP THR PHE GLN ASP THR GLN GLU ILE SEQRES 11 A 433 LYS GLN ARG VAL VAL PHE LYS TYR SER GLN MET ILE ASN SEQRES 12 A 433 ILE SER ASP TYR ILE ASN ARG TRP ILE PHE VAL THR ILE SEQRES 13 A 433 THR ASN ASN ARG ILE THR LYS SER LYS ILE TYR ILE ASN SEQRES 14 A 433 GLY ARG LEU ILE ASP GLN LYS PRO ILE SER ASN LEU GLY SEQRES 15 A 433 ASN ILE HIS ALA SER ASN LYS ILE MET PHE LYS LEU ASP SEQRES 16 A 433 GLY CYS ARG ASP PRO HIS ARG TYR ILE VAL ILE LYS TYR SEQRES 17 A 433 PHE ASN LEU PHE ASP LYS GLU LEU SER GLU LYS GLU ILE SEQRES 18 A 433 LYS ASP LEU TYR ASP ASN GLN SER ASN SER GLY ILE LEU SEQRES 19 A 433 LYS ASP PHE TRP GLY ASP TYR LEU GLN TYR ASP LYS SER SEQRES 20 A 433 TYR TYR MET LEU ASN LEU TYR ASP PRO ASN LYS TYR VAL SEQRES 21 A 433 ASP VAL ASN ASN VAL GLY ILE ARG GLY TYR MET TYR LEU SEQRES 22 A 433 LYS GLY PRO ARG ASP ASN VAL MET THR THR ASN ILE TYR SEQRES 23 A 433 LEU ASN SER SER LEU TYR MET GLY THR LYS PHE ILE ILE SEQRES 24 A 433 LYS LYS TYR ALA SER GLY ASN LYS ASP ASN ILE VAL ARG SEQRES 25 A 433 ASN ASN ASP ARG VAL TYR ILE ASN VAL VAL VAL LYS ASN SEQRES 26 A 433 LYS GLU TYR ARG LEU ALA THR ASN ALA SER GLN ALA GLY SEQRES 27 A 433 VAL GLU LYS ILE LEU SER ALA LEU GLU ILE PRO ASP VAL SEQRES 28 A 433 GLY ASN LEU SER GLN VAL VAL VAL MET LYS SER LYS ASN SEQRES 29 A 433 ASP GLN GLY ILE THR ASN LYS CYS LYS MET ASN LEU GLN SEQRES 30 A 433 ASP ASN ASN GLY ASN ASP ILE GLY PHE ILE GLY PHE HIS SEQRES 31 A 433 GLN PHE ASN ASN ILE ALA LYS LEU VAL ALA SER ASN TRP SEQRES 32 A 433 TYR ASN ARG GLN ILE GLU ARG SER SER ARG THR LEU GLY SEQRES 33 A 433 CYS SER TRP GLU PHE ILE PRO VAL ASP ASP GLY TRP ARG SEQRES 34 A 433 GLU ARG PRO LEU HET NI A1401 1 HET PEG A1402 7 HET PEG A1403 7 HET EDO A1404 4 HET EDO A1405 4 HET EDO A1406 4 HET EDO A1407 4 HET EDO A1408 4 HET BTB A1409 14 HETNAM NI NICKEL (II) ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETSYN EDO ETHYLENE GLYCOL HETSYN BTB BIS-TRIS BUFFER FORMUL 2 NI NI 2+ FORMUL 3 PEG 2(C4 H10 O3) FORMUL 5 EDO 5(C2 H6 O2) FORMUL 10 BTB C8 H19 N O5 FORMUL 11 HOH *309(H2 O) HELIX 1 AA1 LYS A 935 VAL A 939 5 5 HELIX 2 AA2 ASN A 960 LEU A 964 5 5 HELIX 3 AA3 SER A 1086 SER A 1098 1 13 HELIX 4 AA4 GLU A 1216 VAL A 1220 5 5 HELIX 5 AA5 ASN A 1271 GLU A 1278 1 8 SHEET 1 AA1 5 ILE A 895 ASP A 896 0 SHEET 2 AA1 5 SER A 883 VAL A 888 -1 N VAL A 888 O ILE A 895 SHEET 3 AA1 5 TYR A1072 PHE A1081 -1 O PHE A1078 N ILE A 887 SHEET 4 AA1 5 ILE A 920 ILE A 923 -1 N ILE A 920 O ILE A1075 SHEET 5 AA1 5 TYR A 911 TYR A 912 -1 N TYR A 911 O ARG A 921 SHEET 1 AA2 7 ILE A 895 ASP A 896 0 SHEET 2 AA2 7 SER A 883 VAL A 888 -1 N VAL A 888 O ILE A 895 SHEET 3 AA2 7 TYR A1072 PHE A1081 -1 O PHE A1078 N ILE A 887 SHEET 4 AA2 7 PHE A 947 ARG A 954 -1 N SER A 950 O ASN A1079 SHEET 5 AA2 7 ILE A1021 ASN A1027 -1 O VAL A1023 N PHE A 951 SHEET 6 AA2 7 LYS A1032 ILE A1037 -1 O TYR A1036 N THR A1024 SHEET 7 AA2 7 ARG A1040 PRO A1046 -1 O ILE A1042 N ILE A1035 SHEET 1 AA3 7 GLU A 903 ASN A 906 0 SHEET 2 AA3 7 ILE A 930 ILE A 933 -1 O ILE A 933 N GLU A 903 SHEET 3 AA3 7 LYS A1058 ASP A1064 -1 O PHE A1061 N ILE A 930 SHEET 4 AA3 7 TYR A 968 GLU A 975 -1 N THR A 969 O ASP A1064 SHEET 5 AA3 7 SER A 978 ASN A 985 -1 O SER A 978 N GLU A 975 SHEET 6 AA3 7 GLU A 988 GLN A 994 -1 O ILE A 990 N SER A 983 SHEET 7 AA3 7 LYS A1000 LYS A1006 -1 O VAL A1003 N TRP A 991 SHEET 1 AA4 2 ASN A 941 SER A 942 0 SHEET 2 AA4 2 ILE A1053 HIS A1054 -1 O ILE A1053 N SER A 942 SHEET 1 AA5 9 TYR A1128 ASN A1132 0 SHEET 2 AA5 9 TYR A1139 LYS A1143 -1 O TYR A1139 N ASN A1132 SHEET 3 AA5 9 ILE A1264 SER A1270 -1 O ALA A1265 N LEU A1142 SHEET 4 AA5 9 ASP A1252 PHE A1261 -1 N GLY A1257 O VAL A1268 SHEET 5 AA5 9 MET A1243 GLN A1246 -1 N LEU A1245 O ILE A1253 SHEET 6 AA5 9 VAL A1226 MET A1229 -1 N VAL A1226 O GLN A1246 SHEET 7 AA5 9 ARG A1185 VAL A1192 -1 N VAL A1186 O VAL A1227 SHEET 8 AA5 9 LYS A1195 ALA A1200 -1 O LEU A1199 N ILE A1188 SHEET 9 AA5 9 SER A1213 LEU A1215 -1 O LEU A1215 N ARG A1198 SHEET 1 AA6 9 LYS A1210 ILE A1211 0 SHEET 2 AA6 9 ILE A1264 SER A1270 -1 O ALA A1269 N LYS A1210 SHEET 3 AA6 9 ASP A1252 PHE A1261 -1 N GLY A1257 O VAL A1268 SHEET 4 AA6 9 MET A1243 GLN A1246 -1 N LEU A1245 O ILE A1253 SHEET 5 AA6 9 VAL A1226 MET A1229 -1 N VAL A1226 O GLN A1246 SHEET 6 AA6 9 ARG A1185 VAL A1192 -1 N VAL A1186 O VAL A1227 SHEET 7 AA6 9 LYS A1165 LYS A1170 -1 N LYS A1169 O TYR A1187 SHEET 8 AA6 9 SER A1116 ASN A1121 -1 N TYR A1117 O PHE A1166 SHEET 9 AA6 9 TRP A1288 ILE A1291 -1 O ILE A1291 N TYR A1118 SHEET 1 AA7 2 ASN A1148 THR A1151 0 SHEET 2 AA7 2 TYR A1155 SER A1158 -1 O ASN A1157 N VAL A1149 SSBOND 1 CYS A 1241 CYS A 1286 1555 1555 2.09 LINK ND1 HIS A1259 NI NI A1401 1555 1555 2.03 LINK NI NI A1401 O4 BTB A1409 1555 1555 2.14 LINK NI NI A1401 O6 BTB A1409 1555 1555 2.17 LINK NI NI A1401 O3 BTB A1409 1555 1555 2.15 LINK NI NI A1401 N BTB A1409 1555 1555 2.11 LINK NI NI A1401 O8 BTB A1409 1555 1555 2.12 CISPEP 1 GLY A 1144 PRO A 1145 0 2.07 SITE 1 AC1 2 HIS A1259 BTB A1409 SITE 1 AC2 5 HIS A1070 TYR A1072 ASP A1295 HOH A1546 SITE 2 AC2 5 HOH A1566 SITE 1 AC3 6 GLU A 903 LYS A 909 ARG A 921 GLU A 931 SITE 2 AC3 6 LYS A1058 HOH A1566 SITE 1 AC4 5 ILE A 884 ILE A 938 TYR A 940 TRP A 980 SITE 2 AC4 5 HOH A1660 SITE 1 AC5 3 TRP A 952 LYS A1076 GLY A1108 SITE 1 AC6 1 HOH A1575 SITE 1 AC7 6 LYS A 957 PHE A 959 GLY A1296 TRP A1297 SITE 2 AC7 6 ARG A1298 HOH A1696 SITE 1 AC8 3 ASP A1114 LYS A1169 GLU A1196 SITE 1 AC9 10 ASN A 976 GLU A 998 GLU A1209 PHE A1258 SITE 2 AC9 10 HIS A1259 TRP A1272 TYR A1273 NI A1401 SITE 3 AC9 10 HOH A1733 HOH A1784 CRYST1 115.888 115.888 115.888 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008629 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008629 0.00000