HEADER HYDROLASE 23-NOV-17 6F23 TITLE COMPLEX BETWEEN MTH1 AND COMPOUND 16 (A 4-AMINO-7-AZAINDOLE TITLE 2 DERIVATIVE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2-HYDROXY-DATP DIPHOSPHATASE,8-OXO-DGTPASE,NUCLEOSIDE COMPND 5 DIPHOSPHATE-LINKED MOIETY X MOTIF 1,NUDIX MOTIF 1; COMPND 6 EC: 3.6.1.55,3.6.1.56; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 VARIANT: ISOFORM P18; SOURCE 6 GENE: NUDT1, MTH1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS NUDIX, NUCLEOTIDE HYDROLASE, INHIBITOR, ONCOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.VIKLUND,L.TRESAUGUES,A.TALAGAS,M.ANDERSSON,U.ERICSSON,R.FORSBLOM, AUTHOR 2 T.GINMAN,K.HALLBERG,J.LINDSTROM,L.PERSSON,C.SILVANDER,F.RAHM REVDAT 3 17-JAN-24 6F23 1 REMARK REVDAT 2 04-APR-18 6F23 1 JRNL REVDAT 1 07-MAR-18 6F23 0 JRNL AUTH F.RAHM,J.VIKLUND,L.TRESAUGUES,M.ELLERMANN,A.GIESE, JRNL AUTH 2 U.ERICSSON,R.FORSBLOM,T.GINMAN,J.GUNTHER,K.HALLBERG, JRNL AUTH 3 J.LINDSTROM,L.B.PERSSON,C.SILVANDER,A.TALAGAS,L.DIAZ-SAEZ, JRNL AUTH 4 O.FEDOROV,K.V.M.HUBER,I.PANAGAKOU,P.SIEJKA,M.GORJANACZ, JRNL AUTH 5 M.BAUSER,M.ANDERSSON JRNL TITL CREATION OF A NOVEL CLASS OF POTENT AND SELECTIVE MUTT JRNL TITL 2 HOMOLOGUE 1 (MTH1) INHIBITORS USING FRAGMENT-BASED SCREENING JRNL TITL 3 AND STRUCTURE-BASED DRUG DESIGN. JRNL REF J. MED. CHEM. V. 61 2533 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 29485874 JRNL DOI 10.1021/ACS.JMEDCHEM.7B01884 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 28037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1443 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2025 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.5300 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.5010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2540 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 107 REMARK 3 SOLVENT ATOMS : 199 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.32000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.801 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2742 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2456 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3718 ; 1.559 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5711 ; 0.889 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 323 ; 6.635 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;34.696 ;24.254 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 461 ;13.484 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;12.571 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 385 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3015 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 593 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1268 ; 0.253 ; 0.833 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1267 ; 0.253 ; 0.833 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1587 ; 0.432 ; 1.249 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1588 ; 0.432 ; 1.249 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1474 ; 0.694 ; 1.060 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1474 ; 0.694 ; 1.060 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2128 ; 0.948 ; 1.568 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2921 ; 5.839 ;10.792 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2921 ; 5.839 ;10.787 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1673 -10.5942 -13.0406 REMARK 3 T TENSOR REMARK 3 T11: 0.0244 T22: 0.0618 REMARK 3 T33: 0.2625 T12: -0.0024 REMARK 3 T13: -0.0261 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 2.2062 L22: 3.1668 REMARK 3 L33: 1.7513 L12: -1.0728 REMARK 3 L13: -0.4969 L23: 0.5361 REMARK 3 S TENSOR REMARK 3 S11: 0.0661 S12: 0.1117 S13: 0.0711 REMARK 3 S21: -0.2644 S22: -0.0382 S23: 0.1061 REMARK 3 S31: -0.0736 S32: 0.0064 S33: -0.0279 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 1.7000 -10.5714 -10.8203 REMARK 3 T TENSOR REMARK 3 T11: 0.0100 T22: 0.0576 REMARK 3 T33: 0.2680 T12: 0.0050 REMARK 3 T13: -0.0172 T23: -0.0000 REMARK 3 L TENSOR REMARK 3 L11: 2.2997 L22: 2.6050 REMARK 3 L33: 0.6459 L12: 0.7268 REMARK 3 L13: -0.4961 L23: -0.3111 REMARK 3 S TENSOR REMARK 3 S11: 0.0353 S12: -0.0789 S13: -0.0311 REMARK 3 S21: 0.0169 S22: -0.0157 S23: 0.0766 REMARK 3 S31: 0.0576 S32: 0.0203 S33: -0.0196 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 56 REMARK 3 ORIGIN FOR THE GROUP (A): 34.2104 12.7296 -7.5286 REMARK 3 T TENSOR REMARK 3 T11: 0.0332 T22: 0.1299 REMARK 3 T33: 0.6261 T12: 0.0207 REMARK 3 T13: 0.0624 T23: -0.1030 REMARK 3 L TENSOR REMARK 3 L11: 9.5791 L22: 4.2341 REMARK 3 L33: 0.3336 L12: -1.4454 REMARK 3 L13: 1.3164 L23: 0.5710 REMARK 3 S TENSOR REMARK 3 S11: 0.1313 S12: -0.3045 S13: 1.5827 REMARK 3 S21: -0.3568 S22: -0.2959 S23: -0.3184 REMARK 3 S31: -0.0487 S32: -0.0883 S33: 0.1646 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 57 B 156 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8188 10.5123 -8.7932 REMARK 3 T TENSOR REMARK 3 T11: 0.0087 T22: 0.0795 REMARK 3 T33: 0.5897 T12: -0.0027 REMARK 3 T13: 0.0682 T23: -0.0791 REMARK 3 L TENSOR REMARK 3 L11: 6.2910 L22: 2.6528 REMARK 3 L33: 0.4185 L12: 1.0667 REMARK 3 L13: 1.2747 L23: 0.5084 REMARK 3 S TENSOR REMARK 3 S11: 0.0988 S12: -0.2250 S13: 1.1027 REMARK 3 S21: -0.0400 S22: -0.0823 S23: -0.1332 REMARK 3 S31: -0.0092 S32: -0.0081 S33: -0.0165 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6F23 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200006433. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972957 REMARK 200 MONOCHROMATOR : SILICON (111) CRYSTAL REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29541 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 48.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 1.87700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3Q93 REMARK 200 REMARK 200 REMARK: FLAT ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 6000, 0.28M LITHIUM SULFATE, REMARK 280 0.1M SODIUM ACETATE PH 3.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.71000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.70500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.54000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.70500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.71000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.54000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 47 O HOH B 301 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 90 44.30 -90.86 REMARK 500 CYS B 104 127.73 -170.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C8Z A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C8Z B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 206 DBREF 6F23 A 1 156 UNP P36639 8ODP_HUMAN 42 197 DBREF 6F23 B 1 156 UNP P36639 8ODP_HUMAN 42 197 SEQADV 6F23 GLY A -2 UNP P36639 EXPRESSION TAG SEQADV 6F23 SER A -1 UNP P36639 EXPRESSION TAG SEQADV 6F23 HIS A 0 UNP P36639 EXPRESSION TAG SEQADV 6F23 GLY B -2 UNP P36639 EXPRESSION TAG SEQADV 6F23 SER B -1 UNP P36639 EXPRESSION TAG SEQADV 6F23 HIS B 0 UNP P36639 EXPRESSION TAG SEQRES 1 A 159 GLY SER HIS MET GLY ALA SER ARG LEU TYR THR LEU VAL SEQRES 2 A 159 LEU VAL LEU GLN PRO GLN ARG VAL LEU LEU GLY MET LYS SEQRES 3 A 159 LYS ARG GLY PHE GLY ALA GLY ARG TRP ASN GLY PHE GLY SEQRES 4 A 159 GLY LYS VAL GLN GLU GLY GLU THR ILE GLU ASP GLY ALA SEQRES 5 A 159 ARG ARG GLU LEU GLN GLU GLU SER GLY LEU THR VAL ASP SEQRES 6 A 159 ALA LEU HIS LYS VAL GLY GLN ILE VAL PHE GLU PHE VAL SEQRES 7 A 159 GLY GLU PRO GLU LEU MET ASP VAL HIS VAL PHE CYS THR SEQRES 8 A 159 ASP SER ILE GLN GLY THR PRO VAL GLU SER ASP GLU MET SEQRES 9 A 159 ARG PRO CYS TRP PHE GLN LEU ASP GLN ILE PRO PHE LYS SEQRES 10 A 159 ASP MET TRP PRO ASP ASP SER TYR TRP PHE PRO LEU LEU SEQRES 11 A 159 LEU GLN LYS LYS LYS PHE HIS GLY TYR PHE LYS PHE GLN SEQRES 12 A 159 GLY GLN ASP THR ILE LEU ASP TYR THR LEU ARG GLU VAL SEQRES 13 A 159 ASP THR VAL SEQRES 1 B 159 GLY SER HIS MET GLY ALA SER ARG LEU TYR THR LEU VAL SEQRES 2 B 159 LEU VAL LEU GLN PRO GLN ARG VAL LEU LEU GLY MET LYS SEQRES 3 B 159 LYS ARG GLY PHE GLY ALA GLY ARG TRP ASN GLY PHE GLY SEQRES 4 B 159 GLY LYS VAL GLN GLU GLY GLU THR ILE GLU ASP GLY ALA SEQRES 5 B 159 ARG ARG GLU LEU GLN GLU GLU SER GLY LEU THR VAL ASP SEQRES 6 B 159 ALA LEU HIS LYS VAL GLY GLN ILE VAL PHE GLU PHE VAL SEQRES 7 B 159 GLY GLU PRO GLU LEU MET ASP VAL HIS VAL PHE CYS THR SEQRES 8 B 159 ASP SER ILE GLN GLY THR PRO VAL GLU SER ASP GLU MET SEQRES 9 B 159 ARG PRO CYS TRP PHE GLN LEU ASP GLN ILE PRO PHE LYS SEQRES 10 B 159 ASP MET TRP PRO ASP ASP SER TYR TRP PHE PRO LEU LEU SEQRES 11 B 159 LEU GLN LYS LYS LYS PHE HIS GLY TYR PHE LYS PHE GLN SEQRES 12 B 159 GLY GLN ASP THR ILE LEU ASP TYR THR LEU ARG GLU VAL SEQRES 13 B 159 ASP THR VAL HET C8Z A 201 20 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HET SO4 A 206 5 HET GOL A 207 6 HET GOL A 208 6 HET C8Z B 200 20 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HET SO4 B 205 5 HET SO4 B 206 5 HETNAM C8Z 4-[(2~{R})-2-PHENYLPYRROLIDIN-1-YL]-1~{H}-PYRROLO[2,3- HETNAM 2 C8Z B]PYRIDINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 C8Z 2(C17 H17 N3) FORMUL 4 SO4 11(O4 S 2-) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 18 HOH *199(H2 O) HELIX 1 1 ILE A 45 SER A 57 1 13 HELIX 2 2 LEU A 108 GLN A 110 5 3 HELIX 3 3 PHE A 113 ASP A 115 5 3 HELIX 4 4 PRO A 118 LEU A 128 5 11 HELIX 5 5 ILE B 45 SER B 57 1 13 HELIX 6 6 LEU B 108 GLN B 110 5 3 HELIX 7 7 PHE B 113 ASP B 115 5 3 HELIX 8 8 PRO B 118 LEU B 128 5 11 SHEET 1 A 6 PHE A 35 LYS A 38 0 SHEET 2 A 6 SER A 4 VAL A 12 -1 N VAL A 10 O PHE A 35 SHEET 3 A 6 LEU A 80 THR A 88 1 N LEU A 80 O ARG A 5 SHEET 4 A 6 HIS A 65 PHE A 74 -1 N PHE A 72 O MET A 81 SHEET 5 A 6 PHE A 133 GLN A 140 1 N PHE A 133 O GLN A 69 SHEET 6 A 6 THR A 144 GLU A 152 -1 N ARG A 151 O HIS A 134 SHEET 1 B 3 VAL A 12 GLN A 14 0 SHEET 2 B 3 ARG A 17 LYS A 23 -1 N LEU A 19 O VAL A 12 SHEET 3 B 3 MET A 101 GLN A 107 -1 N PHE A 106 O VAL A 18 SHEET 1 C 6 PHE B 35 LYS B 38 0 SHEET 2 C 6 SER B 4 VAL B 12 -1 N VAL B 10 O PHE B 35 SHEET 3 C 6 LEU B 80 THR B 88 1 N LEU B 80 O ARG B 5 SHEET 4 C 6 HIS B 65 PHE B 74 -1 N PHE B 72 O MET B 81 SHEET 5 C 6 LYS B 132 GLN B 140 1 N PHE B 133 O GLN B 69 SHEET 6 C 6 THR B 144 VAL B 153 -1 N VAL B 153 O LYS B 132 SHEET 1 D 2 ARG B 17 LYS B 23 0 SHEET 2 D 2 MET B 101 GLN B 107 -1 N PHE B 106 O VAL B 18 SITE 1 AC1 7 THR A 8 LEU A 9 PHE A 27 PHE A 72 SITE 2 AC1 7 TRP A 117 ASP A 119 ASP A 120 SITE 1 AC2 7 ARG A 151 VAL A 153 ASP A 154 THR A 155 SITE 2 AC2 7 HOH A 330 VAL B 96 GLU B 97 SITE 1 AC3 4 GLY A -2 HIS A 134 ARG A 151 THR B 94 SITE 1 AC4 6 ALA A 63 HIS A 65 THR A 88 ASP A 89 SITE 2 AC4 6 SER A 90 HOH A 312 SITE 1 AC5 3 HIS A 65 LYS A 66 HOH A 348 SITE 1 AC6 5 ARG A 17 THR A 94 PRO A 95 TRP A 105 SITE 2 AC6 5 LYS B 132 SITE 1 AC7 5 THR A 44 ILE A 45 GLU A 46 HOH A 371 SITE 2 AC7 5 GLY B 42 SITE 1 AC8 12 LYS A 24 GLU A 97 SER A 98 ASP A 99 SITE 2 AC8 12 LYS A 138 ASP A 147 HOH A 310 HOH A 364 SITE 3 AC8 12 TYR B 122 ILE B 145 LEU B 146 SO4 B 203 SITE 1 AC9 7 THR B 8 PHE B 27 PHE B 72 MET B 81 SITE 2 AC9 7 TRP B 117 ASP B 119 ASP B 120 SITE 1 AD1 7 ARG B 151 VAL B 153 ASP B 154 THR B 155 SITE 2 AD1 7 HOH B 302 HOH B 310 HOH B 357 SITE 1 AD2 5 ALA B 63 HIS B 65 THR B 88 ASP B 89 SITE 2 AD2 5 SER B 90 SITE 1 AD3 6 LYS A 24 GOL A 208 HOH A 306 TYR B 122 SITE 2 AD3 6 TYR B 148 HOH B 308 SITE 1 AD4 4 TYR A 148 HIS B 134 ARG B 151 HOH B 322 SITE 1 AD5 3 LEU B 64 HIS B 65 LYS B 66 SITE 1 AD6 6 GLN A 16 GLY A 42 THR B 44 ILE B 45 SITE 2 AD6 6 GLU B 46 HOH B 358 CRYST1 59.420 67.080 83.410 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016829 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014908 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011989 0.00000